Result : A8F3G4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S16 |
| NCBI Accession ID | CP000812.1 |
| Organism | Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO) (Thermotoga lettingae) |
| Left | 130697 |
| Right | 130993 |
| Strand | - |
| Nucleotide Sequence | GTGGTAAGAATAAGACTTACAAGAATGGGAAAAAGGCACATGCCGTTTTACAGGATTGTTGTAGTTGATTCAAGAAAAAGACGAGATGGAGCATACATCGAATCACTTGGATATTACAACCCACTTCGAAAACCGGCTGAAATCAAAGTAAATGTAGAAAGAGCTGTTGAATGGATTTTGAAAGGAGCCCAACCAAGTGAAACAGCGGCAAATATTTTAAGCAAAGCGGGAGTTCTTGCAAAAGTTCATGAGATGAAATATGGTAAAAGGGAGAAGAGTGATGAAGGAGTTAGTTGA |
| Sequence | MVRIRLTRMGKRHMPFYRIVVVDSRKRRDGAYIESLGYYNPLRKPAEIKVNVERAVEWILKGAQPSETAANILSKAGVLAKVHEMKYGKREKSDEGVS |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00368. Profile Description: Ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | |
| Domain | CDD:412339 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A8F3G4 |
| ORF Length (Amino Acid) | 98 |
++ More..
| Conservation Analysis |
No. of Species: 409
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 130697 | 130993 | - | NC_009828.1 | Pseudothermotoga lettingae TMO |
| 2 | 121935 | 122231 | - | NC_022792.1 | Pseudothermotoga elfii DSM 9442 = NBRC 107921 |
| 3 | 314067 | 314363 | + | NZ_AP014510.1 | Thermotoga profunda AZM34c06 |
| 4 | 2034537 | 2034833 | - | NC_022795.1 | Pseudothermotoga hypogea DSM 11164 = NBRC 106472 |
| 5 | 1089071 | 1089328 | - | NZ_AP014509.1 | Thermotoga caldifontis AZM44c09 |
| 6 | 770864 | 771145 | - | NC_015707.1 | Pseudothermotoga thermarum DSM 5069 |
| 7 | 1268240 | 1268527 | - | NC_013642.1 | Thermotoga naphthophila RKU-10 |
| 8 | 1244875 | 1245162 | - | NC_009486.1 | Thermotoga petrophila RKU-1 |
| 9 | 1258693 | 1258980 | - | NC_023151.1 | Thermotoga maritima MSB8 |
| 10 | 1117177 | 1117464 | + | NC_011978.1 | Thermotoga neapolitana DSM 4359 |
| 11 | 1562767 | 1563060 | + | NC_012785.1 | Kosmotoga olearia TBF 19.5.1 |
| 12 | 859162 | 859452 | - | NZ_CP011232.1 | Kosmotoga pacifica |
| 13 | 793104 | 793379 | + | NC_016751.1 | Marinitoga piezophila KA3 |
| 14 | 1884764 | 1885051 | - | NZ_LS974202.1 | Mesotoga infera |
| 15 | 63365 | 63649 | - | NC_011653.1 | Thermosipho africanus TCF52B |
| 16 | 1788806 | 1789093 | - | NZ_CP007389.1 | Thermosipho melanesiensis |
| 17 | 321973 | 322263 | + | NC_017934.1 | Mesotoga prima MesG1.Ag.4.2 |
| 18 | 711735 | 712007 | + | NC_009718.1 | Fervidobacterium nodosum Rt17-B1 |
| 19 | 2599668 | 2599913 | + | NZ_CP026363.1 | Brevibacillus agri |
| 20 | 920028 | 920306 | + | NZ_AP018712.1 | Tepiditoga spiralis |
| 21 | 2388284 | 2388529 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 22 | 257403 | 257654 | - | NC_013939.1 | Deferribacter desulfuricans SSM1 |
| 23 | 443624 | 443872 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 24 | 424112 | 424444 | - | NZ_LN824141.1 | Defluviitoga tunisiensis |
| 25 | 767016 | 767288 | + | NZ_AP019551.1 | Athalassotoga saccharophila |
| 26 | 1039972 | 1040217 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 27 | 1802554 | 1802799 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 28 | 345410 | 345745 | + | NC_010003.1 | Petrotoga mobilis SJ95 |
| 29 | 2789376 | 2789621 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 30 | 2931751 | 2931996 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 31 | 1431576 | 1431821 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 32 | 1425270 | 1425515 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 33 | 3434205 | 3434450 | + | NZ_CP021434.1 | Tumebacillus avium |
| 34 | 617995 | 618240 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 35 | 708470 | 708733 | + | NZ_CP014324.1 | Oenococcus oeni |
| 36 | 2151016 | 2151261 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 37 | 5464991 | 5465236 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 38 | 1040747 | 1040992 | - | NZ_CP017326.1 | Weissella soli |
| 39 | 2210033 | 2210278 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 40 | 1597923 | 1598171 | - | NZ_LS483306.1 | Enterococcus cecorum |
| 41 | 1130747 | 1130995 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 42 | 858564 | 858809 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 43 | 1693559 | 1693807 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 44 | 6150367 | 6150612 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 45 | 2165528 | 2165794 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 46 | 747055 | 747300 | + | NZ_CP027563.1 | Weissella confusa |
| 47 | 1218076 | 1218342 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 48 | 1020204 | 1020452 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 49 | 645036 | 645281 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 50 | 749763 | 750008 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 51 | 769012 | 769257 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 52 | 762793 | 763038 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 53 | 2763568 | 2763813 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 54 | 4177697 | 4177942 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 55 | 6105373 | 6105618 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 56 | 918089 | 918337 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 57 | 994375 | 994623 | + | NZ_CP065211.1 | Enterococcus lactis |
| 58 | 139509 | 139754 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 59 | 2616832 | 2617071 | + | NZ_CP035108.1 | Geovibrio thiophilus |
| 60 | 2595308 | 2595553 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 61 | 1068508 | 1068759 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 62 | 1954439 | 1954687 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 63 | 114192 | 114446 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 64 | 2591519 | 2591764 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 65 | 1047007 | 1047279 | + | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 66 | 1032191 | 1032439 | - | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 67 | 2104733 | 2104981 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 68 | 3397907 | 3398152 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 69 | 2476360 | 2476608 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 70 | 1806039 | 1806284 | - | NZ_LR134293.1 | Streptococcus canis |
| 71 | 751547 | 751795 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 72 | 1794948 | 1795193 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 73 | 1221760 | 1222008 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 74 | 1173718 | 1173963 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 75 | 4652719 | 4652964 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 76 | 2600807 | 2601052 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 77 | 1305721 | 1305966 | - | NZ_LR134512.1 | Streptococcus agalactiae |
| 78 | 4956928 | 4957173 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 79 | 3737518 | 3737763 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 80 | 1062462 | 1062707 | - | NZ_LS483343.1 | Streptococcus ferus |
| 81 | 4370337 | 4370582 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 82 | 1669993 | 1670238 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 83 | 1219096 | 1219341 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 84 | 304954 | 305199 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 85 | 666948 | 667193 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 86 | 2341193 | 2341438 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 87 | 1553898 | 1554146 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 88 | 1532051 | 1532299 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 89 | 1536516 | 1536764 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 90 | 1790523 | 1790801 | - | NZ_CP024955.1 | Kyrpidia spormannii |
| 91 | 4236565 | 4236810 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 92 | 6308927 | 6309172 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 93 | 4767622 | 4767867 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 94 | 736361 | 736609 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 95 | 3840179 | 3840424 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 96 | 839275 | 839523 | + | NZ_CP017267.1 | Vagococcus teuberi |
| 97 | 1965693 | 1965941 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 98 | 3491606 | 3491851 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 99 | 1137960 | 1138205 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 100 | 1243999 | 1244247 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 101 | 1659230 | 1659475 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 102 | 652778 | 653023 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 103 | 2332271 | 2332516 | - | NZ_CP011937.1 | Bacillus velezensis |
| 104 | 1628630 | 1628875 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 105 | 1755081 | 1755326 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 106 | 1810135 | 1810380 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 107 | 6169064 | 6169309 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 108 | 2573814 | 2574059 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 109 | 1478145 | 1478390 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 110 | 1291877 | 1292125 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 111 | 1467320 | 1467598 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 112 | 1576588 | 1576836 | + | NZ_CP023011.2 | Enterococcus hirae |
| 113 | 1506548 | 1506793 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 114 | 3277285 | 3277530 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 115 | 1439280 | 1439525 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 116 | 765155 | 765400 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 117 | 956778 | 957023 | - | NZ_CP029476.1 | Lactobacillus apis |
| 118 | 2300888 | 2301142 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 119 | 1226861 | 1227109 | - | NZ_CP045007.1 | Latilactobacillus graminis |
| 120 | 246858 | 247106 | + | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 121 | 1523793 | 1524041 | + | NZ_CP046037.1 | Latilactobacillus sakei |
| 122 | 1036727 | 1036972 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 123 | 1047061 | 1047309 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 124 | 4576542 | 4576814 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 125 | 1779009 | 1779254 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 126 | 2813820 | 2814092 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 127 | 1266462 | 1266716 | - | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 128 | 888180 | 888434 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 129 | 1052095 | 1052343 | + | NZ_CP049886.1 | Vagococcus coleopterorum |
| 130 | 1445569 | 1445817 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 131 | 552855 | 553103 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 132 | 894199 | 894444 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 133 | 1918935 | 1919189 | + | NZ_CP036259.1 | Sporomusa termitida |
| 134 | 766359 | 766604 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 135 | 1101243 | 1101488 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 136 | 1022118 | 1022363 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 137 | 1041375 | 1041620 | - | NZ_LS483403.1 | Streptococcus lutetiensis |
| 138 | 1251899 | 1252159 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 139 | 795857 | 796105 | - | NZ_CP013237.1 | Streptococcus mutans |
| 140 | 854831 | 855076 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 141 | 265238 | 265483 | + | NZ_CP014835.1 | Streptococcus halotolerans |
| 142 | 1068930 | 1069175 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 143 | 1353513 | 1353758 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 144 | 1120347 | 1120592 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 145 | 2540574 | 2540819 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 146 | 1852009 | 1852254 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 147 | 1677767 | 1678012 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 148 | 1641447 | 1641692 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 149 | 1646518 | 1646763 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 150 | 312234 | 312479 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 151 | 1673647 | 1673892 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 152 | 4068091 | 4068336 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 153 | 1908539 | 1908784 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 154 | 3268535 | 3268780 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 155 | 1097368 | 1097613 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 156 | 1714573 | 1714818 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 157 | 410577 | 410822 | - | NZ_AP013035.1 | Thermosulfidibacter takaii ABI70S6 |
| 158 | 1951200 | 1951439 | + | NZ_CP045875.1 | Heliorestis convoluta |
| 159 | 2411312 | 2411557 | - | NC_013943.1 | Denitrovibrio acetiphilus DSM 12809 |
| 160 | 884508 | 884777 | - | NZ_AP019711.1 | Amedibacterium intestinale |
| 161 | 1789139 | 1789384 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 162 | 854699 | 854947 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 163 | 1857095 | 1857343 | - | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 164 | 1459617 | 1459862 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 165 | 1581329 | 1581574 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 166 | 846474 | 846719 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 167 | 3449100 | 3449345 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 168 | 1148374 | 1148619 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 169 | 1801619 | 1801864 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 170 | 1800980 | 1801225 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 171 | 3786287 | 3786532 | - | NZ_CP009288.1 | Paenibacillus durus |
| 172 | 543893 | 544138 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 173 | 2078356 | 2078601 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 174 | 879116 | 879361 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 175 | 2456849 | 2457103 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 176 | 855402 | 855647 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 177 | 1562587 | 1562832 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 178 | 2407157 | 2407402 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 179 | 2567570 | 2567815 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 180 | 1573197 | 1573466 | - | NZ_CP034118.1 | Staphylospora marina |
| 181 | 428052 | 428297 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 182 | 799253 | 799498 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 183 | 1281837 | 1282082 | - | NZ_CP039457.1 | Streptococcus pasteurianus |
| 184 | 2183818 | 2184063 | - | NZ_CP054015.1 | Streptococcus gallolyticus |
| 185 | 1609149 | 1609394 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 186 | 2066730 | 2066975 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 187 | 3301025 | 3301279 | + | NZ_CP034437.1 | Paenibacillus albus |
| 188 | 2765183 | 2765437 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 189 | 897396 | 897650 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 190 | 2098625 | 2098873 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 191 | 3988884 | 3989129 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 192 | 1837268 | 1837516 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 193 | 1024628 | 1024873 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 194 | 654008 | 654253 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 195 | 1742281 | 1742529 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 196 | 1951159 | 1951404 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 197 | 2369952 | 2370200 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 198 | 1195850 | 1196095 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 199 | 388238 | 388483 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 200 | 1467169 | 1467414 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 201 | 667863 | 668111 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 202 | 1501319 | 1501564 | + | NZ_CP040336.1 | Bacillus luti |
| 203 | 3658378 | 3658623 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 204 | 3727923 | 3728168 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 205 | 3862973 | 3863218 | - | NC_011725.1 | Bacillus cereus B4264 |
| 206 | 3867215 | 3867460 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 207 | 854051 | 854296 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 208 | 1050187 | 1050441 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 209 | 845602 | 845856 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 210 | 1108392 | 1108637 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 211 | 2793123 | 2793371 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 212 | 894477 | 894725 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 213 | 1162676 | 1162933 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 214 | 985556 | 985828 | + | NZ_CP013213.1 | Erysipelothrix larvae |
| 215 | 1575194 | 1575439 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 216 | 3743746 | 3743991 | - | NZ_CP043404.1 | Bacillus safensis |
| 217 | 1342225 | 1342473 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 218 | 1604715 | 1604963 | - | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 219 | 4233689 | 4233943 | - | NZ_AP018449.1 | Methylomusa anaerophila |
| 220 | 1717648 | 1717893 | - | NZ_CP016843.1 | Carnobacterium divergens |
| 221 | 4813118 | 4813363 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 222 | 124028 | 124273 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 223 | 1764120 | 1764365 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 224 | 2093043 | 2093285 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 225 | 2603503 | 2603775 | + | NZ_CP013023.1 | Paenibacillus bovis |
| 226 | 1566503 | 1566748 | - | NZ_CP022680.1 | Streptococcus respiraculi |
| 227 | 149719 | 149964 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 228 | 1056862 | 1057107 | + | NZ_CP033433.1 | Cohnella candidum |
| 229 | 582889 | 583134 | + | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 230 | 895383 | 895628 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 231 | 1531114 | 1531362 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 232 | 2221058 | 2221297 | - | NZ_CP048436.1 | Flavonifractor plautii |
| 233 | 1577708 | 1577953 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 234 | 2171952 | 2172197 | + | NZ_CP053989.1 | Niallia circulans |
| 235 | 370838 | 371077 | + | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 236 | 1988019 | 1988273 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 237 | 1206135 | 1206380 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 238 | 1088665 | 1088913 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 239 | 942398 | 942643 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 240 | 1444643 | 1444888 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 241 | 1503422 | 1503667 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 242 | 4323021 | 4323275 | - | NZ_AP019400.1 | Cohnella abietis |
| 243 | 1502814 | 1503062 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 244 | 599013 | 599258 | + | NZ_CP061835.1 | Weissella viridescens |
| 245 | 3401325 | 3401570 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 246 | 1984689 | 1984955 | + | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 247 | 2421074 | 2421316 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 248 | 1050387 | 1050632 | + | NZ_LR134483.1 | Listeria grayi |
| 249 | 2486767 | 2487012 | + | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 250 | 1743704 | 1743952 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 251 | 1103512 | 1103760 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 252 | 4880817 | 4881056 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 253 | 4965660 | 4965905 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 254 | 668328 | 668579 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 255 | 1185721 | 1185966 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 256 | 1145506 | 1145751 | + | NZ_CP046996.1 | Dehalobacter restrictus |
| 257 | 679720 | 679965 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 258 | 3907137 | 3907388 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 259 | 1027733 | 1027978 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 260 | 2586248 | 2586493 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 261 | 3503427 | 3503699 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 262 | 3988732 | 3988977 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 263 | 2686907 | 2687173 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 264 | 1794622 | 1794867 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 265 | 1311529 | 1311774 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 266 | 2922376 | 2922624 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 267 | 1543246 | 1543515 | - | NC_018024.1 | Acetomicrobium mobile DSM 13181 |
| 268 | 1150607 | 1150852 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 269 | 1012702 | 1012947 | - | NZ_CP032621.1 | Streptococcus gwangjuense |
| 270 | 750916 | 751161 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 271 | 34052 | 34297 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 272 | 1580998 | 1581243 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 273 | 1416853 | 1417095 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 274 | 1219060 | 1219320 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 275 | 1038638 | 1038886 | - | NZ_LT906439.1 | Streptococcus merionis |
| 276 | 3027549 | 3027794 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 277 | 1197305 | 1197556 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 278 | 1239128 | 1239379 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 279 | 2184520 | 2184759 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 280 | 378312 | 378557 | - | NZ_CP049889.1 | Jeotgalibaca porci |
| 281 | 3267210 | 3267455 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 282 | 2371951 | 2372196 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 283 | 1262692 | 1262937 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 284 | 2262743 | 2262982 | - | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 285 | 1438065 | 1438325 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 286 | 1691720 | 1691965 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 287 | 1928728 | 1928979 | + | NZ_CP023392.1 | Lactococcus raffinolactis |
| 288 | 1616917 | 1617165 | + | NZ_CP043405.1 | Streptococcus ratti |
| 289 | 1715734 | 1715973 | - | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 290 | 2881687 | 2881935 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 291 | 1343838 | 1344083 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 292 | 302035 | 302277 | - | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 293 | 2723118 | 2723363 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 294 | 2158819 | 2159064 | - | NZ_CP060715.1 | Erysipelothrix inopinata |
| 295 | 1376469 | 1376714 | - | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 296 | 1602146 | 1602394 | - | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 297 | 2084337 | 2084597 | + | NC_014758.1 | Calditerrivibrio nitroreducens DSM 19672 |
| 298 | 1708251 | 1708496 | + | NZ_AP017312.1 | Aneurinibacillus soli |
| 299 | 1270074 | 1270346 | - | NZ_CP046314.1 | Gemella morbillorum |
| 300 | 932232 | 932504 | + | NZ_LR134484.1 | Gemella haemolysans |
| 301 | 1091052 | 1091303 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 302 | 3995179 | 3995418 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 303 | 1007644 | 1007892 | + | NZ_CP047361.1 | Macrococcus canis |
| 304 | 428129 | 428383 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 305 | 2872750 | 2873037 | + | NC_014836.1 | Desulfurispirillum indicum S5 |
| 306 | 2569073 | 2569318 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 307 | 1545691 | 1545936 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 308 | 1421220 | 1421465 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 309 | 2890617 | 2890862 | - | NZ_CP014150.1 | Paeniclostridium sordellii |
| 310 | 2671239 | 2671511 | - | NZ_LS483476.1 | Lederbergia lentus |
| 311 | 946301 | 946546 | + | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 312 | 1482970 | 1483227 | - | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 313 | 959899 | 960144 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 314 | 2090956 | 2091207 | - | NC_015672.1 | Flexistipes sinusarabici DSM 4947 |
| 315 | 911718 | 911963 | + | NZ_CP017237.1 | Moorella thermoacetica |
| 316 | 74224 | 74535 | - | NC_014221.1 | Truepera radiovictrix DSM 17093 |
| 317 | 1406070 | 1406327 | - | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 318 | 1825607 | 1825879 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 319 | 1841454 | 1841726 | - | NZ_LT906444.1 | Listeria welshimeri |
| 320 | 1922044 | 1922316 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 321 | 1867427 | 1867699 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 322 | 1492753 | 1492998 | - | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 323 | 4232745 | 4232990 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 324 | 2045521 | 2045766 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 325 | 2700641 | 2700886 | - | NZ_CP019870.1 | Clostridioides difficile |
| 326 | 1276617 | 1276862 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 327 | 1276054 | 1276296 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 328 | 1905122 | 1905367 | + | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 329 | 551905 | 552147 | + | NZ_CP016379.1 | Anoxybacter fermentans |
| 330 | 1040598 | 1040843 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 331 | 1949917 | 1950162 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 332 | 712951 | 713199 | - | NZ_CP065729.1 | Macrococcus caseolyticus |
| 333 | 790741 | 790980 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 334 | 2200584 | 2200829 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 335 | 3018443 | 3018688 | + | NZ_CP013661.2 | Planococcus kocurii |
| 336 | 2245125 | 2245370 | - | NZ_CP019401.1 | Planococcus faecalis |
| 337 | 2111000 | 2111245 | - | NZ_CP016540.2 | Planococcus versutus |
| 338 | 3082079 | 3082324 | - | NZ_CP009933.1 | Clostridium scatologenes |
| 339 | 1303560 | 1303820 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 340 | 1307740 | 1308000 | - | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 341 | 1281762 | 1282022 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 342 | 1419265 | 1419525 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 343 | 2250791 | 2251033 | - | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 344 | 1972468 | 1972713 | - | NZ_CP016538.2 | Planococcus maritimus |
| 345 | 1995711 | 1995956 | - | NZ_CP059540.1 | Planococcus maritimus |
| 346 | 1768142 | 1768387 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 347 | 722462 | 722716 | - | NZ_CP038452.1 | Thermus caldilimi |
| 348 | 1494623 | 1494892 | - | NC_016148.1 | Thermovirga lienii DSM 17291 |
| 349 | 1185883 | 1186128 | + | NZ_CP020953.1 | Clostridium drakei |
| 350 | 147156 | 147401 | + | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 351 | 2097284 | 2097529 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 352 | 1473898 | 1474164 | - | NC_013522.1 | Thermanaerovibrio acidaminovorans DSM 6589 |
| 353 | 257890 | 258144 | - | NZ_CP016312.1 | Thermus brockianus |
| 354 | 1090720 | 1090965 | + | NC_015520.1 | Mahella australiensis 50-1 BON |
| 355 | 1822142 | 1822384 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 356 | 1472664 | 1472921 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 357 | 1514640 | 1514885 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 358 | 1844244 | 1844501 | + | NZ_CP040924.1 | Clostridium thermarum |
| 359 | 1537934 | 1538209 | - | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 360 | 691678 | 691953 | + | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 361 | 1460327 | 1460602 | - | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 362 | 2140720 | 2140968 | - | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 363 | 2617772 | 2618035 | + | NC_010814.1 | Geobacter lovleyi SZ |
| 364 | 1280297 | 1280539 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 365 | 1713057 | 1713302 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 366 | 1309769 | 1310029 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 367 | 1180775 | 1181017 | + | NZ_CP035130.1 | Gudongella oleilytica |
| 368 | 579618 | 579893 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 369 | 854220 | 854474 | + | NC_019386.1 | Thermus oshimai JL-2 |
| 370 | 352948 | 353286 | + | NZ_CP029844.1 | Blattabacterium clevelandi |
| 371 | 1457664 | 1457942 | - | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 372 | 58499 | 58741 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 373 | 1807274 | 1807513 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 374 | 1005058 | 1005324 | + | NZ_CP014141.1 | Thermus parvatiensis |
| 375 | 1000618 | 1000881 | - | NZ_CP010822.1 | Thermus aquaticus Y51MC23 |
| 376 | 2647560 | 2647799 | + | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 377 | 1251201 | 1251467 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 378 | 1221728 | 1221970 | - | NZ_CP027228.1 | Mogibacterium diversum |
| 379 | 1706881 | 1707123 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 380 | 3194865 | 3195104 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 381 | 2001405 | 2001710 | + | NZ_CP042829.1 | Tepidiforma bonchosmolovskayae |
| 382 | 1376885 | 1377127 | + | NZ_CP048649.1 | Aminipila butyrica |
| 383 | 1712062 | 1712337 | + | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 384 | 325367 | 325636 | + | NC_019793.1 | Deinococcus peraridilitoris DSM 19664 |
| 385 | 1730912 | 1731184 | + | NZ_AP014924.1 | Limnochorda pilosa |
| 386 | 1451801 | 1452061 | - | NZ_CP014164.1 | Aerococcus viridans |
| 387 | 1442448 | 1442705 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 388 | 982747 | 983013 | - | NC_006461.1 | Thermus thermophilus HB8 |
| 389 | 869434 | 869703 | + | NZ_CP011391.1 | Faecalibaculum rodentium |
| 390 | 724650 | 724910 | + | NZ_CP013988.1 | Aerococcus urinaeequi |
| 391 | 558896 | 559171 | - | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 392 | 1665643 | 1665918 | - | NZ_CP035288.1 | Staphylococcus epidermidis |
| 393 | 1727420 | 1727695 | - | NZ_AP018587.1 | Staphylococcus caprae |
| 394 | 890130 | 890405 | + | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 395 | 1159735 | 1160010 | + | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 396 | 541258 | 541533 | + | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 397 | 2578890 | 2579138 | + | NC_014958.1 | Deinococcus maricopensis DSM 21211 |
| 398 | 1084351 | 1084617 | + | NZ_CP013114.1 | Staphylococcus equorum |
| 399 | 2310185 | 2310436 | - | NC_014212.1 | Meiothermus silvanus DSM 9946 |
| 400 | 93088 | 93363 | - | NZ_CP033732.1 | Staphylococcus hominis |
| 401 | 1230265 | 1230540 | + | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 402 | 1770172 | 1770462 | - | NC_013525.1 | Thermobaculum terrenum ATCC BAA-798 |
| 403 | 1539628 | 1539900 | - | NC_015387.1 | Marinithermus hydrothermalis DSM 14884 |
| 404 | 803920 | 804159 | + | NZ_CP018258.1 | Dehalogenimonas formicexedens |
| 405 | 1185586 | 1185861 | + | NZ_LT906460.1 | Staphylococcus simiae |
| 406 | 2573663 | 2573911 | + | NZ_CP061800.1 | Desulfonema magnum |
| 407 | 6750510 | 6750764 | + | NZ_AP021875.1 | Desulfosarcina widdelii |
| 408 | 2145647 | 2145928 | - | NC_009767.1 | Roseiflexus castenholzii DSM 13941 |
| 409 | 1372805 | 1373107 | - | NC_014761.1 | Oceanithermus profundus DSM 14977 |
| 410 | 1277830 | 1278123 | + | NC_020813.1 | Bdellovibrio exovorus JSS |
| 411 | 722236 | 722487 | + | NZ_CP051774.1 | Luteolibacter luteus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP026363.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01245.22 | 0.72 | 293 | 1897.0 | same-strand | Ribosomal protein L19 |
| 2 | PF01746.23 | 0.9 | 370 | 879 | same-strand | tRNA (Guanine-1)-methyltransferase |
| 3 | PF01782.20 | 0.93 | 381 | 364 | same-strand | RimM N-terminal domain |
| 4 | PF05239.18 | 0.88 | 360 | 364 | same-strand | PRC-barrel domain |
| 5 | PF13083.8 | 0.86 | 351 | 16.0 | same-strand | KH domain |
| 6 | PF00448.24 | 0.82 | 335 | 172 | same-strand | SRP54-type protein, GTPase domain |
| 7 | PF02978.21 | 0.82 | 335 | 118.0 | same-strand | Signal peptide binding domain |
| 8 | PF02881.21 | 0.82 | 335 | 172 | same-strand | SRP54-type protein, helical bundle domain |
| 9 | PF04297.16 | 0.68 | 277 | 1512.5 | same-strand | Putative helix-turn-helix protein, YlxM / p13 like |
++ More..