Result : A8F0E6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CP000683.1 |
| Organism | Rickettsia massiliae (strain Mtu5) |
| Left | 60171 |
| Right | 60458 |
| Strand | + |
| Nucleotide Sequence | ATGTTAAAAAGTAATAATGCTAGTGAAACAGCTGCTCGCAAGGTAGGAGATAAAACTGCTAAAAAAGTATTTTTTAGAAGACGTAAAGGATGCCCTCTTTCTGTGCCTCATGCACCTGTTATTGATTATAAAAATCCTGAGCTTTTAATAAAATTTGTCTCTGAAGGCGGTAGAATGTTACCAAGCAGGATCACAAATGTTTGTGCAAAGAAACAAAGAAAGCTAAATAATGCTGTTAAAATTGCAAGAATTTTAGCGTTATTACCTTTTGTATTTCAAGCTAAATAA |
| Sequence | MLKSNNASETAARKVGDKTAKKVFFRRRKGCPLSVPHAPVIDYKNPELLIKFVSEGGRMLPSRITNVCAKKQRKLNNAVKIARILALLPFVFQAK |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 17916642 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A8F0E6 |
| ORF Length (Amino Acid) | 95 |
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| Conservation Analysis |
No. of Species: 68
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 84075 | 84362 | + | NC_017058.1 | Rickettsia australis str. Cutlack |
| 2 | 206949 | 207236 | - | NZ_AP019563.1 | Rickettsia asiatica |
| 3 | 61412 | 61699 | + | NZ_AP019864.1 | Rickettsia heilongjiangensis |
| 4 | 59731 | 60018 | + | NC_010263.3 | Rickettsia rickettsii str. Iowa |
| 5 | 56984 | 57271 | + | NC_003103.1 | Rickettsia conorii str. Malish 7 |
| 6 | 60208 | 60495 | + | NC_016639.1 | Rickettsia slovaca 13-B |
| 7 | 357616 | 357903 | - | NZ_LN794217.1 | Rickettsia monacensis |
| 8 | 44363 | 44650 | + | NC_016929.1 | Rickettsia canadensis str. CA410 |
| 9 | 52716 | 53003 | + | NC_009881.1 | Rickettsia akari str. Hartford |
| 10 | 116866 | 117153 | - | NC_017066.1 | Rickettsia typhi str. TH1527 |
| 11 | 45202 | 45489 | + | NC_017049.1 | Rickettsia prowazekii str. Chernikova |
| 12 | 139610 | 139894 | - | NC_007940.1 | Rickettsia bellii RML369-C |
| 13 | 2058365 | 2058640 | + | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 14 | 2894008 | 2894289 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 15 | 357417 | 357698 | - | NZ_CP038141.1 | Swingsia samuiensis |
| 16 | 220307 | 220564 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 17 | 1143137 | 1143412 | - | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 18 | 2382452 | 2382727 | - | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 19 | 964158 | 964433 | - | NZ_CP019875.1 | Komagataeibacter nataicola |
| 20 | 1299875 | 1300150 | - | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 21 | 331860 | 332144 | + | NZ_CP014681.1 | Kozakia baliensis |
| 22 | 5683200 | 5683439 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 23 | 1260438 | 1260668 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 24 | 2222753 | 2223034 | - | NZ_AP014690.1 | Asaia bogorensis NBRC 16594 |
| 25 | 1844325 | 1844564 | + | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 26 | 3861495 | 3861734 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 27 | 244713 | 244952 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 28 | 2623484 | 2623723 | + | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 29 | 4791946 | 4792185 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 30 | 3203389 | 3203622 | + | NZ_CP031555.1 | Thalassospira indica |
| 31 | 6346968 | 6347207 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 32 | 2737025 | 2737264 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 33 | 3554474 | 3554713 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 34 | 6975136 | 6975375 | + | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 35 | 401218 | 401475 | - | NZ_CP068419.1 | Gluconobacter sphaericus |
| 36 | 348049 | 348306 | - | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 37 | 4209340 | 4209579 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 38 | 2485902 | 2486159 | + | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 39 | 4551355 | 4551594 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 40 | 2700577 | 2700852 | - | NZ_CP060244.1 | Entomobacter blattae |
| 41 | 1599603 | 1599854 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 42 | 2870883 | 2871122 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 43 | 1125158 | 1125433 | - | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 44 | 2524703 | 2524981 | + | NZ_CP027850.1 | Caulobacter segnis |
| 45 | 1809621 | 1809860 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 46 | 1812605 | 1812859 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 47 | 4565200 | 4565454 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 48 | 2422260 | 2422514 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 49 | 1493723 | 1493971 | - | NZ_CP058235.1 | Bartonella alsatica |
| 50 | 2413825 | 2414079 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 51 | 589629 | 589877 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 52 | 3392010 | 3392249 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 53 | 2359868 | 2360116 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 54 | 2878878 | 2879126 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 55 | 1062770 | 1063018 | + | NZ_CP054021.1 | Rhizobium indicum |
| 56 | 1756634 | 1756882 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 57 | 768247 | 768495 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 58 | 1215656 | 1215904 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 59 | 1245080 | 1245328 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 60 | 1013984 | 1014232 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 61 | 1500320 | 1500568 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 62 | 911583 | 911831 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 63 | 1292907 | 1293155 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 64 | 1237868 | 1238116 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 65 | 1269195 | 1269443 | + | NZ_CP010401.1 | Bartonella ancashensis |
| 66 | 895616 | 895903 | - | NC_023063.1 | Ehrlichia muris AS145 |
| 67 | 499866 | 500114 | - | NC_008783.1 | Bartonella bacilliformis KC583 |
| 68 | 766469 | 766717 | - | NZ_CP034909.1 | Ensifer alkalisoli |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017058.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01250.19 | 1.0 | 68 | 13.5 | same-strand | Ribosomal protein S6 |
| 2 | PF03948.16 | 0.97 | 66 | 512.5 | same-strand | Ribosomal protein L9, C-terminal domain |
| 3 | PF01281.21 | 0.97 | 66 | 512.5 | same-strand | Ribosomal protein L9, N-terminal domain |
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