Result : Q49Y27
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | AP008934.1 |
| Organism | Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) |
| Left | 1216380 |
| Right | 1216631 |
| Strand | - |
| Nucleotide Sequence | ATGCCAAACATCAAATCTGCAATTAAACGTGTTAATACAACACATACTGCTGAAGAACGTAATATTTCTCAAAAAAATGAAATGCGTACAGCAGTTAAAAGAGCTCATTCAGCTTTAGAATCAAATGCTGATAACAAAGCTGACTTATTGAGTTTTGCTTTGAAAAAAGTAGATAAAGCTGCACAACGCAACTTAATCCACGACAACAAAGCTGCTCGTATTAAGTCATCATTAATGACAGCTGCTAAATAA |
| Sequence | MPNIKSAIKRVNTTHTAEERNISQKNEMRTAVKRAHSALESNADNKADLLSFALKKVDKAAQRNLIHDNKAARIKSSLMTAAK |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 16135568 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q49Y27 |
| ORF Length (Amino Acid) | 83 |
++ More..
| Conservation Analysis |
No. of Species: 143
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1246227 | 1246478 | - | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 2 | 1324568 | 1324819 | - | NZ_CP008724.1 | Staphylococcus xylosus |
| 3 | 1466640 | 1466891 | + | NZ_CP013114.1 | Staphylococcus equorum |
| 4 | 478757 | 479008 | - | NZ_CP018199.1 | Staphylococcus succinus |
| 5 | 1292930 | 1293181 | - | NZ_CP064056.1 | Staphylococcus lloydii |
| 6 | 1238469 | 1238720 | - | NZ_LR134242.1 | Staphylococcus warneri |
| 7 | 190444 | 190695 | + | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 8 | 1127935 | 1128186 | - | NZ_CP065712.1 | Staphylococcus auricularis |
| 9 | 1208064 | 1208312 | + | NZ_CP045927.1 | Staphylococcus agnetis |
| 10 | 1348024 | 1348272 | - | NZ_CP008747.1 | Staphylococcus hyicus |
| 11 | 208088 | 208336 | - | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 12 | 1985799 | 1986050 | - | NZ_CP033732.1 | Staphylococcus hominis |
| 13 | 920534 | 920785 | + | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 14 | 517125 | 517376 | + | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 15 | 1402962 | 1403210 | + | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 16 | 1276476 | 1276727 | - | NZ_CP035288.1 | Staphylococcus epidermidis |
| 17 | 1338605 | 1338856 | - | NZ_AP018587.1 | Staphylococcus caprae |
| 18 | 1262347 | 1262598 | + | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 19 | 52332 | 52580 | + | NZ_CP020773.1 | Staphylococcus lutrae |
| 20 | 1668738 | 1668989 | + | NZ_CP033460.1 | Staphylococcus debuckii |
| 21 | 1085727 | 1085975 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 22 | 1425477 | 1425728 | - | NZ_CP018776.1 | Staphylococcus condimenti |
| 23 | 2061936 | 2062187 | + | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 24 | 2031768 | 2032016 | + | NZ_CP027770.1 | Staphylococcus felis |
| 25 | 1136590 | 1136841 | - | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 26 | 1588538 | 1588789 | + | NZ_LT906460.1 | Staphylococcus simiae |
| 27 | 1112643 | 1112894 | + | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 28 | 1600106 | 1600357 | + | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 29 | 1045404 | 1045655 | - | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 30 | 1665543 | 1665794 | + | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 31 | 1529993 | 1530241 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 32 | 329793 | 330041 | - | NZ_CP065729.1 | Macrococcus caseolyticus |
| 33 | 1417089 | 1417337 | + | NZ_CP047361.1 | Macrococcus canis |
| 34 | 641818 | 642069 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 35 | 1350711 | 1350956 | - | NZ_CP011366.1 | Salinicoccus halodurans |
| 36 | 2079575 | 2079829 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 37 | 1494849 | 1495097 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 38 | 1458621 | 1458869 | - | NZ_CP016538.2 | Planococcus maritimus |
| 39 | 1468627 | 1468875 | - | NZ_CP059540.1 | Planococcus maritimus |
| 40 | 1211730 | 1211978 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 41 | 1228379 | 1228633 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 42 | 1270439 | 1270693 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 43 | 1357429 | 1357677 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 44 | 1437190 | 1437444 | + | NZ_LR134483.1 | Listeria grayi |
| 45 | 1894866 | 1895120 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 46 | 573632 | 573922 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 47 | 916094 | 916342 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 48 | 1277738 | 1277992 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 49 | 1426491 | 1426745 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 50 | 434321 | 434575 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 51 | 1561092 | 1561340 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 52 | 1261345 | 1261599 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 53 | 701649 | 701903 | - | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 54 | 1895624 | 1895875 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 55 | 264755 | 265015 | - | NZ_CP039712.1 | Vagococcus zengguangii |
| 56 | 1933281 | 1933535 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 57 | 1583955 | 1584203 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 58 | 826296 | 826550 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 59 | 1409967 | 1410218 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 60 | 1464852 | 1465103 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 61 | 1827888 | 1828157 | + | NZ_CP034118.1 | Staphylospora marina |
| 62 | 2548780 | 2549028 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 63 | 1938494 | 1938748 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 64 | 2055295 | 2055549 | - | NZ_CP023643.1 | Brochothrix thermosphacta |
| 65 | 3418501 | 3418767 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 66 | 1790410 | 1790664 | - | NZ_CP016843.1 | Carnobacterium divergens |
| 67 | 2432230 | 2432484 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 68 | 4332809 | 4333075 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 69 | 2865119 | 2865373 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 70 | 784388 | 784648 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 71 | 828958 | 829212 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 72 | 1390274 | 1390531 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 73 | 2865308 | 2865580 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 74 | 630979 | 631233 | + | NZ_CP014163.1 | Aerococcus urinaehominis |
| 75 | 766971 | 767243 | - | NZ_CP033433.1 | Cohnella candidum |
| 76 | 1073162 | 1073404 | - | NZ_CP046314.1 | Gemella morbillorum |
| 77 | 557661 | 557912 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 78 | 2193379 | 2193627 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 79 | 1607426 | 1607680 | - | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 80 | 1581374 | 1581628 | + | NZ_CP065211.1 | Enterococcus lactis |
| 81 | 612021 | 612269 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 82 | 1596895 | 1597143 | + | NZ_CP014164.1 | Aerococcus viridans |
| 83 | 1153183 | 1153437 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 84 | 1332702 | 1332953 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 85 | 725174 | 725428 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 86 | 673411 | 673665 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 87 | 1207601 | 1207843 | + | NZ_LR134484.1 | Gemella haemolysans |
| 88 | 4179713 | 4179985 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 89 | 703032 | 703286 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 90 | 1625188 | 1625442 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 91 | 1292690 | 1292947 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 92 | 617854 | 618111 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 93 | 672534 | 672788 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 94 | 2254874 | 2255128 | + | NZ_CP023011.2 | Enterococcus hirae |
| 95 | 3447627 | 3447890 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 96 | 1557608 | 1557862 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 97 | 4501134 | 4501406 | + | NZ_CP009288.1 | Paenibacillus durus |
| 98 | 685487 | 685738 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 99 | 1173314 | 1173571 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 100 | 1214534 | 1214791 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 101 | 1802897 | 1803151 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 102 | 1548001 | 1548255 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 103 | 1513917 | 1514171 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 104 | 1022077 | 1022331 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 105 | 466916 | 467188 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 106 | 1855223 | 1855495 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 107 | 1491010 | 1491264 | + | NZ_LT906444.1 | Listeria welshimeri |
| 108 | 2298769 | 2299029 | + | NZ_CP012024.1 | Bacillus smithii |
| 109 | 2545010 | 2545270 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 110 | 1473930 | 1474187 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 111 | 531603 | 531857 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 112 | 1284450 | 1284716 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 113 | 789737 | 790012 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 114 | 4035097 | 4035363 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 115 | 1845735 | 1846007 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 116 | 1422128 | 1422382 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 117 | 4717399 | 4717671 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 118 | 3482276 | 3482542 | + | NZ_CP053989.1 | Niallia circulans |
| 119 | 284235 | 284507 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 120 | 5548366 | 5548638 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 121 | 260500 | 260772 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 122 | 6082503 | 6082775 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 123 | 5154317 | 5154589 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 124 | 1447468 | 1447722 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 125 | 5297975 | 5298247 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 126 | 2035281 | 2035547 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 127 | 902348 | 902620 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 128 | 6751188 | 6751460 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 129 | 2844367 | 2844639 | - | NZ_CP034437.1 | Paenibacillus albus |
| 130 | 4242136 | 4242408 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 131 | 3091855 | 3092103 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 132 | 1562212 | 1562460 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 133 | 5575305 | 5575577 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 134 | 2337478 | 2337750 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 135 | 2547825 | 2548097 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 136 | 1807504 | 1807770 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 137 | 3429591 | 3429857 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 138 | 1169939 | 1170190 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 139 | 2578326 | 2578580 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 140 | 1370820 | 1371092 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 141 | 3091974 | 3092231 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 142 | 2160845 | 2161099 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 143 | 687235 | 687507 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 144 | 2728512 | 2728784 | - | NZ_CP034248.1 | Paenibacillus lentus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134089.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12836.9 | 0.69 | 99 | 3996.0 | opposite-strand | Helix-hairpin-helix motif |
| 2 | PF00633.25 | 0.67 | 96 | 3997 | opposite-strand | Helix-hairpin-helix motif |
| 3 | PF00383.25 | 0.7 | 100 | 3537 | opposite-strand | Cytidine and deoxycytidylate deaminase zinc-binding region |
| 4 | PF03772.18 | 0.84 | 120 | 1216 | opposite-strand | Competence protein |
| 5 | PF00753.29 | 0.7 | 100 | 1255.5 | opposite-strand | Metallo-beta-lactamase superfamily |
| 6 | PF06144.15 | 0.97 | 139 | 95.0 | opposite-strand | DNA polymerase III, delta subunit |
| 7 | PF00009.29 | 0.8 | 114 | 2272 | opposite-strand | Elongation factor Tu GTP binding domain |
| 8 | PF06421.14 | 0.64 | 92 | 357 | opposite-strand | GTP-binding protein LepA C-terminus |
| 9 | PF00679.26 | 0.64 | 92 | 357 | opposite-strand | Elongation factor G C-terminus |
| 10 | PF03144.27 | 0.8 | 114 | 2272 | opposite-strand | Elongation factor Tu domain 2 |
| 11 | PF01926.25 | 0.78 | 112 | 2340 | opposite-strand | 50S ribosome-binding GTPase |
++ More..