Result : Q48JX9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ribosome modulation factor (RMF) |
| NCBI Accession ID | |
| Organism | Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) (Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MRRLKRDPLERAFLRGYQYGVHGKSRELCPFTLPSVRQAWINGWREGRGDNWDGMTGTAGIHRLNELHAVG |
| Source of smORF | Swiss-Prot |
| Function | During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes). {ECO:0000255|HAMAP-Rule:MF_00919}. |
| Pubmed ID | 16159782 |
| Domain | CDD:420038 |
| Functional Category | Others |
| Uniprot ID | Q48JX9 |
| ORF Length (Amino Acid) | 71 |
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| Conservation Analysis |
No. of Species: 93
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1930675 | 1930890 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 2 | 419032 | 419247 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 3 | 4454357 | 4454572 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 4 | 4269313 | 4269528 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 5 | 4456460 | 4456675 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 6 | 4581418 | 4581633 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 7 | 4738491 | 4738706 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 8 | 2078003 | 2078218 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 9 | 5168486 | 5168701 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 10 | 4768706 | 4768921 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 11 | 3627210 | 3627425 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 12 | 2383666 | 2383881 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 13 | 3669898 | 3670113 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 14 | 3139107 | 3139322 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 15 | 1979616 | 1979831 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 16 | 2557345 | 2557560 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 17 | 1412524 | 1412739 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 18 | 3538372 | 3538587 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 19 | 4058337 | 4058552 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 20 | 5571367 | 5571582 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 21 | 2095394 | 2095609 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 22 | 6351838 | 6352053 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 23 | 2060729 | 2060944 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 24 | 2017207 | 2017422 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 25 | 2006323 | 2006538 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 26 | 5052956 | 5053171 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 27 | 2129000 | 2129215 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 28 | 2040342 | 2040557 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 29 | 5984838 | 5985053 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 30 | 4639086 | 4639301 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 31 | 2990942 | 2991157 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 32 | 1832112 | 1832327 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 33 | 4028007 | 4028222 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 34 | 2029406 | 2029621 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 35 | 1802083 | 1802298 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 36 | 470438 | 470653 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 37 | 2111735 | 2111950 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 38 | 3624636 | 3624851 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 39 | 1826247 | 1826462 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 40 | 3805091 | 3805306 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 41 | 1831658 | 1831873 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 42 | 1897238 | 1897453 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 43 | 4269356 | 4269571 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 44 | 3113827 | 3114042 | + | NZ_CP009365.1 | Pseudomonas soli |
| 45 | 4381071 | 4381286 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 46 | 1759892 | 1760107 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 47 | 1880779 | 1880994 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 48 | 3804532 | 3804747 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 49 | 2964916 | 2965131 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 50 | 2039419 | 2039634 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 51 | 3963072 | 3963290 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 52 | 2022050 | 2022268 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 53 | 3414401 | 3414613 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 54 | 4529959 | 4530177 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 55 | 3300801 | 3301013 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 56 | 5102051 | 5102260 | + | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 57 | 1802495 | 1802710 | + | NZ_CP011797.1 | Reinekea forsetii |
| 58 | 2696241 | 2696450 | + | NZ_CP020931.1 | Marinobacter salarius |
| 59 | 1760503 | 1760718 | - | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 60 | 1633211 | 1633423 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 61 | 1613257 | 1613469 | + | NZ_CP017715.1 | Marinobacter salinus |
| 62 | 1452753 | 1452965 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 63 | 2724863 | 2725066 | + | NZ_CP036422.1 | Halioglobus maricola |
| 64 | 2493181 | 2493390 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 65 | 1790346 | 1790555 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 66 | 3924718 | 3924930 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 67 | 4379937 | 4380140 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 68 | 795520 | 795723 | + | NZ_CP022684.1 | Ketobacter alkanivorans |
| 69 | 1641529 | 1641738 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 70 | 3122739 | 3122948 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 71 | 4687009 | 4687218 | + | NZ_CP059082.1 | Halomonas titanicae |
| 72 | 1154928 | 1155137 | - | NZ_AP022843.1 | Halomonas hydrothermalis |
| 73 | 1234787 | 1234996 | - | NZ_CP065135.1 | Halomonas venusta |
| 74 | 2185734 | 2185940 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 75 | 1563451 | 1563657 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 76 | 2830218 | 2830424 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 77 | 1173391 | 1173600 | - | NZ_CP048602.1 | Halomonas piezotolerans |
| 78 | 2650028 | 2650234 | - | NZ_CP048812.1 | Halomonas socia |
| 79 | 2801886 | 2802092 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 80 | 1349016 | 1349222 | - | NZ_CP013106.1 | Halomonas huangheensis |
| 81 | 2266097 | 2266303 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 82 | 4349623 | 4349826 | - | NZ_CP048711.1 | Kineobactrum salinum |
| 83 | 1961968 | 1962174 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 84 | 2400592 | 2400798 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 85 | 1540042 | 1540251 | - | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 86 | 2568037 | 2568243 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 87 | 159427 | 159636 | + | NZ_CP021323.1 | Kushneria konosiri |
| 88 | 2361375 | 2361581 | + | NZ_CP043420.1 | Kushneria phosphatilytica |
| 89 | 3184989 | 3185198 | - | NZ_CP021358.1 | Kushneria marisflavi |
| 90 | 1526855 | 1527058 | + | NZ_CP060084.1 | Teredinibacter haidensis |
| 91 | 2127962 | 2128156 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 92 | 1281653 | 1281847 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 93 | 1376864 | 1377061 | + | NZ_CP045871.1 | Litoricola lipolytica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP056030.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01180.23 | 0.97 | 90 | 124.5 | opposite-strand | Dihydroorotate dehydrogenase |
| 2 | PF01170.20 | 0.97 | 90 | 460.0 | opposite-strand | Putative RNA methylase family UPF0020 |
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