Result : Q481E4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0352 protein CPS_2611 |
| NCBI Accession ID | CP000083.1 |
| Organism | Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) |
| Left | 2714012 |
| Right | 2714218 |
| Strand | - |
| Nucleotide Sequence | ATGCCTATTGTATCTAAATATTCGAACGAACGTGTAGAAAAAATTATCCAAGATTTGTTAGATGTTCTTGTGAAAGAAGAAGTAACTCCCGATTTAGCCCTAATGTGCTTAGGTAATGCTGTTACAAACATTATTGCCCAAGTACCTGAAAGCAAACGTGTTGCTGTTGTAGACAATTTTACTAAAGCCTTAAAACAATCGGTTTAA |
| Sequence | MPIVSKYSNERVEKIIQDLLDVLVKEEVTPDLALMCLGNAVTNIIAQVPESKRVAVVDNFTKALKQSV |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01175. Profile Description: Protein of unknown function (DUF1414). hypothetical protein; Provisional |
| Pubmed ID | 16043709 |
| Domain | CDD:412779 |
| Functional Category | Others |
| Uniprot ID | Q481E4 |
| ORF Length (Amino Acid) | 68 |
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| Conservation Analysis |
No. of Species: 35
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2714012 | 2714218 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 2 | 455851 | 456069 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 3 | 4274638 | 4274859 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 4 | 1938457 | 1938672 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 5 | 3908992 | 3909204 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 6 | 2039378 | 2039590 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 7 | 454175 | 454387 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 8 | 2362712 | 2362924 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 9 | 4222846 | 4223058 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 10 | 2155943 | 2156155 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 11 | 2296678 | 2296890 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 12 | 1398567 | 1398779 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 13 | 1345282 | 1345494 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 14 | 1908446 | 1908658 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 15 | 2184436 | 2184648 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 16 | 1463528 | 1463740 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 17 | 2173741 | 2173953 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 18 | 1517398 | 1517610 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 19 | 1629242 | 1629454 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 20 | 1439209 | 1439427 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 21 | 2359636 | 2359854 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 22 | 1709375 | 1709587 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 23 | 2457197 | 2457409 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 24 | 348091 | 348321 | - | NZ_LS483250.1 | Moritella yayanosii |
| 25 | 3089917 | 3090135 | + | NC_016901.1 | Shewanella baltica OS678 |
| 26 | 1005414 | 1005644 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 27 | 2022612 | 2022830 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 28 | 3030519 | 3030737 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 29 | 2181518 | 2181733 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 30 | 2725624 | 2725839 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 31 | 3401775 | 3401990 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 32 | 1697292 | 1697507 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 33 | 2365686 | 2365904 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 34 | 2145353 | 2145568 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 35 | 1795851 | 1796078 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003910.7
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF11893.10 | 1.0 | 35 | 19 | same-strand | Domain of unknown function (DUF3413) |
| 2 | PF04245.15 | 1.0 | 35 | 77 | opposite-strand | 37-kD nucleoid-associated bacterial protein |
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