Result : Q479P5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA gyrase inhibitor YacG |
| NCBI Accession ID | CP000089.1 |
| Organism | Dechloromonas aromatica (strain RCB) |
| Left | 3985041 |
| Right | 3985238 |
| Strand | - |
| Nucleotide Sequence | ATGGCCGTACGCAAGGTTCGTTGTCCGCAATGCGGTAAAGACGCCCTGTGGGCGCCGGAGAACCCGTGGCGCCCCTTCTGTTCTGAACGCTGCAAGCAGATCGATCTCGGTTGCTGGGCCAGCGATTCCTACCGGATTCCGGTGCCGGATGACAGCAACGAGCCGGGCACCGATCCCGATCCTACCAGCCGCGCATAA |
| Sequence | MAVRKVRCPQCGKDALWAPENPWRPFCSERCKQIDLGCWASDSYRIPVPDDSNEPGTDPDPTSRA |
| Source of smORF | Swiss-Prot |
| Function | Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. {ECO:0000255|HAMAP-Rule:MF_00649}. |
| Pubmed ID | 19650930 |
| Domain | CDD:412768 |
| Functional Category | Metal-binding |
| Uniprot ID | Q479P5 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 133
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 230633 | 230809 | - | NZ_CP064781.1 | Azospira restricta |
| 2 | 3290693 | 3290860 | + | NC_005363.1 | Bdellovibrio bacteriovorus HD100 |
| 3 | 2422254 | 2422442 | - | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 4 | 370430 | 370621 | + | NZ_CP053073.1 | Usitatibacter palustris |
| 5 | 1379287 | 1379502 | + | NZ_CP012943.1 | Ralstonia solanacearum |
| 6 | 778974 | 779150 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 7 | 1256052 | 1256258 | + | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 8 | 1237118 | 1237306 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 9 | 335156 | 335344 | - | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 10 | 2717383 | 2717577 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 11 | 2630569 | 2630766 | + | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 12 | 357691 | 357885 | + | NZ_CP053069.1 | Usitatibacter rugosus |
| 13 | 2736678 | 2736869 | + | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 14 | 4088416 | 4088583 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 15 | 419013 | 419201 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 16 | 3971267 | 3971455 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 17 | 3169748 | 3169954 | + | NZ_CP016022.1 | Ralstonia insidiosa |
| 18 | 647063 | 647221 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 19 | 2585883 | 2586077 | - | NZ_CP015958.1 | Paraburkholderia caribensis |
| 20 | 3867059 | 3867244 | - | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 21 | 3110113 | 3110307 | + | NZ_CP026111.1 | Paraburkholderia terrae |
| 22 | 607860 | 608048 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 23 | 3530291 | 3530488 | + | NZ_CP024941.1 | Paraburkholderia terricola |
| 24 | 989144 | 989332 | - | NZ_CP038033.1 | Nitrosococcus wardiae |
| 25 | 3903704 | 3903889 | + | NZ_CP062803.1 | Cupriavidus basilensis |
| 26 | 2786189 | 2786374 | + | NZ_CP049134.1 | Paraburkholderia tropica |
| 27 | 548719 | 548907 | - | NZ_CP013401.1 | Burkholderia metallica |
| 28 | 3720004 | 3720201 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 29 | 3175962 | 3176159 | - | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 30 | 3394306 | 3394488 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 31 | 3000768 | 3000962 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 32 | 1166933 | 1167130 | + | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 33 | 1829752 | 1829940 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 34 | 704263 | 704451 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 35 | 1837703 | 1837900 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 36 | 1610273 | 1610455 | + | NZ_CP038018.1 | Eikenella exigua |
| 37 | 2552286 | 2552474 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 38 | 4195271 | 4195480 | - | NZ_CP060790.1 | Acidovorax monticola |
| 39 | 711668 | 711853 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 40 | 3505281 | 3505478 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 41 | 158450 | 158614 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 42 | 521548 | 521727 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 43 | 5521194 | 5521388 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 44 | 1205825 | 1206031 | + | NZ_CP020046.1 | Thiomonas intermedia |
| 45 | 829780 | 829980 | - | NZ_CP016210.1 | Azoarcus olearius |
| 46 | 559796 | 559984 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 47 | 3333122 | 3333307 | + | NZ_CP038853.1 | Pantoea vagans |
| 48 | 4121920 | 4122111 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 49 | 549130 | 549318 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 50 | 1500478 | 1500654 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 51 | 814367 | 814558 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 52 | 32666 | 32863 | - | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 53 | 2501706 | 2501897 | + | NC_021287.1 | Caballeronia insecticola |
| 54 | 1558116 | 1558304 | - | NZ_CP020931.1 | Marinobacter salarius |
| 55 | 4327458 | 4327655 | + | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 56 | 5203838 | 5204032 | + | NZ_CP010310.2 | Pandoraea pulmonicola |
| 57 | 3889617 | 3889814 | + | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 58 | 3229011 | 3229202 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 59 | 3832536 | 3832712 | + | NZ_CP027666.1 | Ottowia oryzae |
| 60 | 3745086 | 3745262 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 61 | 293167 | 293346 | + | NZ_CP018787.1 | Oxalobacter formigenes |
| 62 | 1628011 | 1628208 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 63 | 4965600 | 4965782 | + | NZ_CP010897.2 | Pandoraea vervacti |
| 64 | 529727 | 529942 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 65 | 1084683 | 1084877 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 66 | 3307899 | 3308093 | + | NZ_CP040709.1 | Inhella inkyongensis |
| 67 | 2525645 | 2525842 | + | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 68 | 3032675 | 3032890 | + | NZ_CP027792.1 | Pulveribacter suum |
| 69 | 2378936 | 2379124 | + | NC_007947.1 | Methylobacillus flagellatus KT |
| 70 | 328863 | 329069 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 71 | 5067536 | 5067718 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 72 | 4933504 | 4933686 | + | NZ_CP011253.3 | Pandoraea oxalativorans |
| 73 | 2759340 | 2759528 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 74 | 2130253 | 2130444 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 75 | 388989 | 389174 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 76 | 4756384 | 4756566 | + | NC_023018.2 | Pandoraea pnomenusa |
| 77 | 545155 | 545343 | - | NC_007510.1 | Burkholderia lata |
| 78 | 4558475 | 4558657 | + | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 79 | 706927 | 707121 | - | NZ_CP013481.2 | Pandoraea apista |
| 80 | 1424697 | 1424891 | - | NZ_CP047385.1 | Pandoraea fibrosis |
| 81 | 735114 | 735317 | - | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 82 | 987503 | 987688 | - | NZ_CP041352.1 | Casimicrobium huifangae |
| 83 | 550398 | 550616 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 84 | 3646000 | 3646182 | - | NZ_CP049115.1 | Pantoea stewartii |
| 85 | 491838 | 492026 | - | NZ_CP017715.1 | Marinobacter salinus |
| 86 | 558606 | 558794 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 87 | 653168 | 653350 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 88 | 1727395 | 1727583 | - | NZ_LR134516.1 | Neisseria animaloris |
| 89 | 3348829 | 3349032 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 90 | 2054581 | 2054814 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 91 | 2196742 | 2196975 | + | NZ_CP065135.1 | Halomonas venusta |
| 92 | 859363 | 859554 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 93 | 2214651 | 2214845 | - | NC_017856.1 | Methylophaga frappieri |
| 94 | 4078597 | 4078785 | + | NZ_CP013235.1 | Collimonas arenae |
| 95 | 1315177 | 1315365 | - | NZ_CP048832.1 | Janthinobacterium lividum |
| 96 | 3417282 | 3417473 | + | NZ_CP015581.1 | Tatumella citrea |
| 97 | 1302272 | 1302460 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 98 | 5172230 | 5172418 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 99 | 2020186 | 2020395 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 100 | 4470094 | 4470267 | + | NZ_CP046378.1 | Shewanella algae |
| 101 | 5923602 | 5923802 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 102 | 45905 | 46090 | - | NZ_CP059571.1 | Neisseria bacilliformis |
| 103 | 3371914 | 3372099 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 104 | 1845888 | 1846052 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 105 | 1813083 | 1813268 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 106 | 5026712 | 5026900 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 107 | 5603666 | 5603866 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 108 | 645125 | 645319 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 109 | 3108925 | 3109116 | - | NZ_CP034464.1 | Undibacterium parvum |
| 110 | 578608 | 578820 | - | NC_014207.1 | Methylotenera versatilis 301 |
| 111 | 3079877 | 3080035 | + | NZ_CP029210.1 | Aquabacterium olei |
| 112 | 2366584 | 2366775 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 113 | 1038883 | 1039065 | - | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 114 | 258591 | 258779 | - | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 115 | 377912 | 378097 | - | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 116 | 3102883 | 3103068 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 117 | 3201254 | 3201436 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 118 | 2734064 | 2734249 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 119 | 803867 | 804067 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 120 | 314401 | 314601 | - | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 121 | 3506081 | 3506263 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 122 | 3810020 | 3810208 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 123 | 2184107 | 2184307 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 124 | 3009221 | 3009409 | + | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 125 | 369377 | 369550 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 126 | 887865 | 888023 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 127 | 715901 | 716083 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 128 | 2248861 | 2249055 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 129 | 3870149 | 3870343 | + | NC_018691.1 | Alcanivorax dieselolei B5 |
| 130 | 2483007 | 2483183 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 131 | 1285391 | 1285576 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 132 | 3205585 | 3205773 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 133 | 3115364 | 3115552 | + | NZ_CP019650.1 | Microbulbifer agarilyticus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP064338.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00293.30 | 0.63 | 84 | 67.5 | opposite-strand | NUDIX domain |
| 2 | PF07072.13 | 0.84 | 112 | 25.5 | same-strand | Cell division protein |
| 3 | PF01121.22 | 0.93 | 124 | 875.5 | same-strand | Dephospho-CoA kinase |
| 4 | PF00437.22 | 0.74 | 98 | 3687.5 | same-strand | Type II/IV secretion system protein |
| 5 | PF00482.25 | 0.83 | 110 | 2421.0 | same-strand | Type II secretion system (T2SS), protein F |
| 6 | PF06750.15 | 0.68 | 90 | 1513.0 | same-strand | Bacterial Peptidase A24 N-terminal domain |
| 7 | PF01478.20 | 0.76 | 101 | 1516 | same-strand | Type IV leader peptidase family |
++ More..