* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000117.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00712.21
|
0.67
|
2
|
3331.5
|
opposite-strand
|
DNA polymerase III beta subunit, N-terminal domain
|
2
|
PF02767.18
|
0.67
|
2
|
3331.5
|
opposite-strand
|
DNA polymerase III beta subunit, central domain
|
3
|
PF02768.17
|
0.67
|
2
|
3331.5
|
opposite-strand
|
DNA polymerase III beta subunit, C-terminal domain
|
4
|
PF01668.20
|
1.0
|
3
|
2594
|
same-strand
|
SmpB protein
|
5
|
PF02424.17
|
1.0
|
3
|
1666
|
opposite-strand
|
ApbE family
|
6
|
PF02882.21
|
1.0
|
3
|
833
|
opposite-strand
|
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
|
7
|
PF00763.25
|
1.0
|
3
|
833
|
opposite-strand
|
Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
|
8
|
PF13091.8
|
1.0
|
3
|
2538
|
opposite-strand
|
PLD-like domain
|
9
|
PF01977.18
|
1.0
|
3
|
3783
|
opposite-strand
|
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
|
10
|
PF00830.21
|
1.0
|
3
|
5645
|
opposite-strand
|
Ribosomal L28 family
|
++ More..