Result : Q46336
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sarcosine oxidase subunit delta (Sarcosine oxidase subunit D) (EC 1.5.3.1) |
| NCBI Accession ID | U23955.1 |
| Organism | Corynebacterium sp. (strain P-1) |
| Left | 2016 |
| Right | 2312 |
| Strand | + |
| Nucleotide Sequence | ATGATGCTGATTGAATGCCCGAACTGCGGGCCGCGCAACGAAACCGAATTCTCCTACGGCGGCCAGGCCCATGTGGCCTACCCCGAGGACCCGAACGCCCTGAGCGACAAGGAATGGTCCCGCTACCTGTTCTACCGCGAGAACTCCAAGGGGATCTTCGCCGAACGCTGGGTCCACTCCGGCGGATGCCGCAAGTGGTTCAACGCCCTGCGCGATACCGCAACCTATGAATTCAAGGCCGTCTACCGGGCCGGGGAACCGCGTCCGGAACTGAACACCCAGGGAGGATCCCGATGA |
| Sequence | MMLIECPNCGPRNETEFSYGGQAHVAYPEDPNALSDKEWSRYLFYRENSKGIFAERWVHSGGCRKWFNALRDTATYEFKAVYRAGEPRPELNTQGGSR |
| Source of smORF | Swiss-Prot |
| Function | Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10-methylenetetrahydrofolate. |
| Pubmed ID | 7543100 |
| Domain | CDD:413053 |
| Functional Category | Others |
| Uniprot ID | Q46336 |
| ORF Length (Amino Acid) | 98 |
++ More..
| Conservation Analysis |
No. of Species: 139
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3093179 | 3093478 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 2 | 2904213 | 2904512 | - | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 3 | 3054630 | 3054929 | - | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 4 | 1695650 | 1695949 | - | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 5 | 112632 | 112922 | + | NZ_CP026734.1 | Brevibacterium linens |
| 6 | 1981145 | 1981435 | - | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 7 | 2216683 | 2216973 | + | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 8 | 2344663 | 2344992 | + | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 9 | 764377 | 764664 | + | NZ_CP013254.1 | Kocuria flava |
| 10 | 134283 | 134615 | + | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 11 | 988801 | 989097 | + | NZ_CP065682.1 | Brevibacterium casei |
| 12 | 7768205 | 7768486 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 13 | 6766204 | 6766500 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 14 | 1449481 | 1449792 | - | NZ_CP023563.1 | Brachybacterium vulturis |
| 15 | 5704175 | 5704450 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 16 | 1022627 | 1022938 | + | NZ_CP022316.1 | Brachybacterium avium |
| 17 | 118157 | 118444 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 18 | 4297103 | 4297381 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 19 | 4606985 | 4607260 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 20 | 2104984 | 2105295 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 21 | 2422819 | 2423097 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 22 | 9147062 | 9147358 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 23 | 5206528 | 5206803 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 24 | 1910776 | 1911093 | + | NZ_CP012117.1 | Dermabacter vaginalis |
| 25 | 2227892 | 2228170 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 26 | 394384 | 394680 | + | NZ_CP031194.1 | Streptomyces paludis |
| 27 | 475985 | 476311 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 28 | 8353374 | 8353652 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 29 | 2122967 | 2123263 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 30 | 125601 | 125897 | - | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 31 | 7775605 | 7775931 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 32 | 4240192 | 4240464 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 33 | 3010530 | 3010844 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 34 | 1998053 | 1998358 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 35 | 832976 | 833302 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 36 | 1276243 | 1276524 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 37 | 1552555 | 1552857 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 38 | 8422947 | 8423213 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 39 | 1029452 | 1029730 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 40 | 7703083 | 7703385 | + | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 41 | 1703786 | 1704052 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 42 | 1452344 | 1452634 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 43 | 986498 | 986749 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 44 | 4164492 | 4164782 | + | NZ_CP048711.1 | Kineobactrum salinum |
| 45 | 5023099 | 5023374 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 46 | 6307945 | 6308220 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 47 | 60585 | 60827 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 48 | 2100000 | 2100275 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 49 | 3446842 | 3447141 | + | NZ_CP042906.1 | Hypericibacter terrae |
| 50 | 1854672 | 1854953 | - | NZ_CP042582.1 | Hypericibacter adhaerens |
| 51 | 91812 | 92111 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 52 | 2341244 | 2341534 | + | NZ_CP014168.1 | Sphingomonas panacis |
| 53 | 1307753 | 1308061 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 54 | 2972223 | 2972513 | - | NZ_AP019700.1 | Stella humosa |
| 55 | 4564499 | 4564777 | + | NZ_AP019700.1 | Stella humosa |
| 56 | 1273769 | 1274071 | + | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 57 | 132789 | 133106 | - | NZ_CP061205.1 | Kordiimonas pumila |
| 58 | 3508024 | 3508320 | - | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 59 | 2049861 | 2050166 | - | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 60 | 352818 | 353123 | + | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 61 | 3141801 | 3142088 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 62 | 3391591 | 3391890 | + | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 63 | 52714 | 53016 | - | NZ_CP021330.1 | Maritalea myrionectae |
| 64 | 1238961 | 1239272 | + | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 65 | 3063494 | 3063796 | + | NZ_CP039690.1 | Phreatobacter stygius |
| 66 | 1534605 | 1534892 | - | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 67 | 146067 | 146372 | + | NZ_CP046908.1 | Stappia indica |
| 68 | 1662741 | 1663028 | + | NZ_CP072611.1 | Aureimonas populi |
| 69 | 1765683 | 1765994 | + | NZ_CP049135.1 | Paraburkholderia tropica |
| 70 | 1784544 | 1784846 | + | NZ_CP035901.1 | Burkholderia glumae |
| 71 | 2362366 | 2362701 | - | NZ_CP017562.1 | Paraburkholderia sprentiae WSM5005 |
| 72 | 2964850 | 2965164 | - | NZ_CP024942.1 | Paraburkholderia terricola |
| 73 | 326705 | 327007 | + | NC_011892.1 | Methylobacterium nodulans ORS 2060 |
| 74 | 1631013 | 1631339 | - | NZ_CP031466.1 | Paraburkholderia caffeinilytica |
| 75 | 807152 | 807445 | + | NZ_CP008782.1 | Burkholderia pseudomallei |
| 76 | 2246320 | 2246619 | - | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 77 | 1436532 | 1436843 | - | NC_021294.1 | Caballeronia insecticola |
| 78 | 3459228 | 3459506 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 79 | 445475 | 445810 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 80 | 1589806 | 1590108 | + | NZ_CP034588.1 | Silicimonas algicola |
| 81 | 2352522 | 2352818 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 82 | 798989 | 799291 | + | NZ_CP002581.1 | Burkholderia plantarii |
| 83 | 91250 | 91519 | - | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 84 | 4007718 | 4008053 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 85 | 322427 | 322732 | - | NZ_LT605585.1 | Brucella inopinata |
| 86 | 531745 | 532071 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 87 | 301277 | 301576 | + | NZ_CP009793.1 | Burkholderia dolosa AU0158 |
| 88 | 4788949 | 4789275 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 89 | 1634248 | 1634568 | + | NZ_CP061004.1 | Agrobacterium tumefaciens |
| 90 | 277811 | 278116 | + | NZ_CP064063.1 | Brucella anthropi |
| 91 | 249484 | 249789 | + | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 92 | 1183600 | 1183893 | + | NC_007650.1 | Burkholderia thailandensis E264 |
| 93 | 3327220 | 3327498 | + | NC_017964.1 | Advenella kashmirensis WT001 |
| 94 | 829725 | 830009 | - | NZ_CP023705.1 | Sphingomonas melonis |
| 95 | 1498609 | 1498899 | - | NZ_CP045871.1 | Litoricola lipolytica |
| 96 | 464312 | 464632 | - | NZ_CP053857.1 | Rhizobium pusense |
| 97 | 543918 | 544217 | + | NC_007511.1 | Burkholderia lata |
| 98 | 1114530 | 1114829 | + | NZ_CP026112.1 | Paraburkholderia terrae |
| 99 | 408546 | 408881 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 100 | 2462804 | 2463103 | - | NZ_CP013403.1 | Burkholderia metallica |
| 101 | 1753977 | 1754261 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 102 | 2469469 | 2469768 | - | NZ_CP013461.1 | Burkholderia stagnalis |
| 103 | 241330 | 241635 | + | NC_010103.1 | Brucella canis ATCC 23365 |
| 104 | 241343 | 241648 | + | NC_004310.3 | Brucella suis 1330 |
| 105 | 242130 | 242435 | + | NC_009505.1 | Brucella ovis ATCC 25840 |
| 106 | 243196 | 243501 | + | NC_013119.1 | Brucella microti CCM 4915 |
| 107 | 1761421 | 1761726 | - | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 108 | 1763444 | 1763749 | - | NC_022905.1 | Brucella ceti TE10759-12 |
| 109 | 239065 | 239370 | + | NC_007618.1 | Brucella abortus 2308 |
| 110 | 396612 | 396947 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 111 | 5486164 | 5486499 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 112 | 1760530 | 1760823 | + | NZ_CP061081.1 | Marinomonas arctica |
| 113 | 3331308 | 3331607 | + | NZ_CP045236.1 | Burkholderia cepacia |
| 114 | 37420 | 37722 | + | NZ_CP004394.1 | Celeribacter indicus |
| 115 | 1666712 | 1666996 | - | NZ_CP009978.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 116 | 1671616 | 1671915 | + | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 117 | 143676 | 143948 | - | NZ_CP016545.1 | Paraurantiacibacter namhicola |
| 118 | 2706179 | 2706463 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 119 | 386425 | 386709 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 120 | 181917 | 182201 | + | NZ_CP035765.1 | Sphingomonas paucimobilis |
| 121 | 6320393 | 6320695 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 122 | 4064227 | 4064511 | - | NZ_CP013232.1 | Collimonas fungivorans |
| 123 | 263032 | 263328 | - | NZ_CP010803.1 | Martelella endophytica |
| 124 | 6330196 | 6330498 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 125 | 65086 | 65373 | - | NZ_CP061941.1 | Marinomonas algicola |
| 126 | 5486382 | 5486717 | + | NZ_CP009365.1 | Pseudomonas soli |
| 127 | 1400125 | 1400409 | + | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 128 | 2810602 | 2810901 | - | NZ_CP020738.1 | Paraburkholderia acidophila |
| 129 | 3037244 | 3037558 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 130 | 61619 | 61903 | + | NZ_CP042263.1 | Qingshengfaniella alkalisoli |
| 131 | 3217525 | 3217827 | - | NZ_CP022196.1 | Celeribacter ethanolicus |
| 132 | 6096707 | 6097027 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 133 | 1611321 | 1611641 | + | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 134 | 706538 | 706825 | + | NZ_CP015839.1 | Marinobacterium aestuarii |
| 135 | 149710 | 150033 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 136 | 1151126 | 1151410 | - | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 137 | 248278 | 248601 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 138 | 2311185 | 2311427 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 139 | 791341 | 791643 | - | NZ_CP024200.1 | Thalassospira marina |
| 140 | 1040723 | 1041010 | + | NZ_CP049115.1 | Pantoea stewartii |
| 141 | 1683931 | 1684230 | + | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 142 | 2596620 | 2596919 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 143 | 4240251 | 4240550 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 144 | 2327497 | 2327775 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 145 | 172487 | 172792 | + | NZ_CP033077.1 | Vibrio zhugei |
| 146 | 2653208 | 2653504 | - | NC_010505.1 | Methylobacterium radiotolerans JCM 2831 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034412.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04268.14 | 0.93 | 129 | 2995.0 | same-strand | Sarcosine oxidase, gamma subunit family |
| 2 | PF01571.23 | 1.0 | 139 | -3.0 | same-strand | Aminomethyltransferase folate-binding domain |
| 3 | PF17806.3 | 0.98 | 136 | -3 | same-strand | Sarcosine oxidase A3 domain |
| 4 | PF13510.8 | 1.0 | 139 | -3.0 | same-strand | 2Fe-2S iron-sulfur cluster binding domain |
| 5 | PF08669.13 | 0.99 | 138 | -3.0 | same-strand | Glycine cleavage T-protein C-terminal barrel domain |
| 6 | PF07992.16 | 0.95 | 132 | -3 | same-strand | Pyridine nucleotide-disulphide oxidoreductase |
| 7 | PF01266.26 | 0.98 | 136 | 19.0 | same-strand | FAD dependent oxidoreductase |
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