Result : A7ZX05
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Transcriptional repressor FrmR |
| NCBI Accession ID | CP000802.1 |
| Organism | Escherichia coli O9:H4 (strain HS) |
| Left | 444889 |
| Right | 445164 |
| Strand | - |
| Nucleotide Sequence | ATGCCCAGTACTCCGGAAGAGAAGAAAAAGGTCCTTACTCGAGTTCGTCGTATTCGAGGGCAGATTGATGCTCTGGAACGGTCGCTGGAGGGTGATGCCGAATGCCGTGCCATACTCCAACAGATCGCTGCCGTTCGGGGCGCGGCTAATGGGCTGATGGCAGAAGTGCTTGAAAGCCATATCCGGGAAACGTTTGACCGAAATGACTGCTACAGCCGCGAAGTCAGCCAATCCGTTGACGACACTATTGAACTGGTTCGAGCCTATCTTAAATAG |
| Sequence | MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIELVRAYLK |
| Source of smORF | Swiss-Prot |
| Function | Repressor of the frmRAB operon. {ECO:0000250}. |
| Pubmed ID | 18676672 |
| Domain | CDD:412603 |
| Functional Category | DNA-binding |
| Uniprot ID | A7ZX05 |
| ORF Length (Amino Acid) | 91 |
++ More..
| Conservation Analysis |
No. of Species: 175
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 379606 | 379881 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 398990 | 399265 | - | NZ_AP014857.1 | Escherichia albertii |
| 3 | 437705 | 437980 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1023818 | 1024093 | - | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 4209512 | 4209787 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 6 | 4305085 | 4305360 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 7 | 2475565 | 2475840 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 8 | 1600167 | 1600442 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 9 | 50862 | 51137 | - | NZ_CP006665.1 | Edwardsiella anguillarum ET080813 |
| 10 | 126261 | 126536 | + | NZ_CP048797.1 | Providencia vermicola |
| 11 | 3911761 | 3912036 | - | NZ_LS483470.1 | Leminorella richardii |
| 12 | 3728290 | 3728565 | + | NZ_CP015581.1 | Tatumella citrea |
| 13 | 478380 | 478658 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 14 | 355478 | 355753 | + | NZ_CP041242.1 | Lysobacter alkalisoli |
| 15 | 1354618 | 1354896 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 16 | 3753501 | 3753776 | - | NZ_CP029843.1 | Lysobacter maris |
| 17 | 2208055 | 2208330 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 18 | 642519 | 642794 | + | NZ_CP009365.1 | Pseudomonas soli |
| 19 | 814124 | 814399 | - | NZ_CP029641.1 | Paraburkholderia dokdonella |
| 20 | 576903 | 577178 | + | NZ_CP023465.1 | Lysobacter capsici |
| 21 | 2731311 | 2731586 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 22 | 611534 | 611809 | + | NZ_CP011131.1 | Lysobacter gummosus |
| 23 | 124786 | 125061 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 24 | 3881970 | 3882245 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 25 | 1687559 | 1687834 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 26 | 3036034 | 3036309 | - | NZ_CP021358.1 | Kushneria marisflavi |
| 27 | 5168867 | 5169142 | - | NZ_CP011129.1 | Lysobacter antibioticus |
| 28 | 1022719 | 1022994 | + | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 29 | 3731391 | 3731666 | - | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 30 | 3881103 | 3881378 | - | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 31 | 6104404 | 6104679 | + | NZ_CP012109.1 | Myxococcus hansupus |
| 32 | 2113724 | 2113999 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 33 | 8667242 | 8667517 | - | NC_008095.1 | Myxococcus xanthus DK 1622 |
| 34 | 5734605 | 5734877 | - | NZ_AP014940.1 | Lysobacter enzymogenes |
| 35 | 8431339 | 8431614 | - | NZ_CP022203.1 | Corallococcus macrosporus DSM 14697 |
| 36 | 3824929 | 3825204 | - | NZ_CP046603.1 | Lysobacter soli |
| 37 | 169489 | 169758 | - | NZ_CP064063.1 | Brucella anthropi |
| 38 | 913179 | 913463 | - | NZ_LR134516.1 | Neisseria animaloris |
| 39 | 270489 | 270764 | + | NZ_CP021323.1 | Kushneria konosiri |
| 40 | 3280144 | 3280419 | - | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 41 | 153700 | 154002 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 42 | 2364820 | 2365092 | - | NZ_CP048796.1 | Providencia vermicola |
| 43 | 2814105 | 2814380 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 44 | 72767 | 73042 | - | NC_021976.1 | Acetobacter pasteurianus 386B |
| 45 | 163155 | 163430 | + | NZ_CP042809.1 | Acetobacter oryzoeni |
| 46 | 473890 | 474165 | + | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 47 | 2273266 | 2273541 | + | NZ_LN606600.1 | Acetobacter senegalensis |
| 48 | 2395650 | 2395925 | + | NZ_LN606600.1 | Acetobacter senegalensis |
| 49 | 5512992 | 5513264 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 50 | 170821 | 171096 | + | NZ_CP036406.1 | Komagataeibacter saccharivorans |
| 51 | 99277 | 99552 | + | NZ_CP036406.1 | Komagataeibacter saccharivorans |
| 52 | 1517060 | 1517332 | + | NZ_LS483422.1 | Providencia heimbachae |
| 53 | 847977 | 848252 | + | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 54 | 145873 | 146157 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 55 | 3981839 | 3982114 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 56 | 3595286 | 3595558 | - | NZ_CP029736.1 | Providencia rettgeri |
| 57 | 11452212 | 11452484 | - | NZ_CP012333.1 | Labilithrix luteola |
| 58 | 2359126 | 2359398 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 59 | 147465 | 147749 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 60 | 145890 | 146174 | - | NC_004310.3 | Brucella suis 1330 |
| 61 | 1858200 | 1858484 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 62 | 438158 | 438442 | + | NZ_LT605585.1 | Brucella inopinata |
| 63 | 47774 | 48037 | - | NZ_CP035510.1 | Haematobacter massiliensis |
| 64 | 4032117 | 4032392 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 65 | 146182 | 146466 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 66 | 2217379 | 2217654 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 67 | 1366016 | 1366291 | - | NZ_CP042218.1 | Luteimonas granuli |
| 68 | 1779899 | 1780174 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 69 | 2590363 | 2590638 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 70 | 2597915 | 2598190 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 71 | 527125 | 527349 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 72 | 2280992 | 2281267 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 73 | 519444 | 519719 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 74 | 543416 | 543691 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 75 | 820250 | 820525 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 76 | 2642508 | 2642783 | - | NZ_CP026364.1 | Proteus hauseri |
| 77 | 2290248 | 2290523 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 78 | 121874 | 122149 | + | NZ_CP005961.1 | Pseudomonas mandelii JR-1 |
| 79 | 1054231 | 1054506 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 80 | 2478030 | 2478305 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 81 | 1932447 | 1932722 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 82 | 3058645 | 3058920 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 83 | 1162972 | 1163247 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 84 | 1404968 | 1405243 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 85 | 1807708 | 1807983 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 86 | 2226157 | 2226432 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 87 | 601738 | 602013 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 88 | 3010272 | 3010562 | + | NZ_CP023705.1 | Sphingomonas melonis |
| 89 | 254982 | 255242 | - | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 90 | 300743 | 301018 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 91 | 2258149 | 2258424 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 92 | 154197 | 154457 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 93 | 2269830 | 2270105 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 94 | 2518753 | 2519028 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 95 | 665079 | 665351 | - | NZ_CP027666.1 | Ottowia oryzae |
| 96 | 2299137 | 2299412 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 97 | 3526763 | 3527038 | - | NZ_CP031222.1 | Aquirhabdus parva |
| 98 | 497623 | 497889 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 99 | 1434404 | 1434679 | + | NZ_LT906479.1 | Serratia ficaria |
| 100 | 4123323 | 4123598 | - | NZ_CP053416.1 | Salmonella bongori |
| 101 | 1059235 | 1059510 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 102 | 1953318 | 1953593 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 103 | 3885414 | 3885689 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 104 | 4786619 | 4786894 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 105 | 222868 | 223143 | - | NZ_CP033744.1 | Citrobacter freundii |
| 106 | 72395 | 72685 | + | NZ_AP017655.1 | Sphingobium cloacae |
| 107 | 2403978 | 2404253 | - | NZ_LR134201.1 | Cedecea lapagei |
| 108 | 3058636 | 3058911 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 109 | 670781 | 671056 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 110 | 3696012 | 3696287 | - | NZ_CP071320.1 | Serratia ureilytica |
| 111 | 201176 | 201451 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 112 | 2199462 | 2199737 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 113 | 1718817 | 1719092 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 114 | 2557028 | 2557303 | - | NZ_CP023525.1 | Cedecea neteri |
| 115 | 5318494 | 5318784 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 116 | 1365166 | 1365441 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 117 | 2085550 | 2085825 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 118 | 1035559 | 1035834 | - | NZ_CP038469.1 | Citrobacter tructae |
| 119 | 979856 | 980122 | + | NZ_CP061202.1 | Rhodobacter capsulatus |
| 120 | 1225976 | 1226251 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 121 | 1158369 | 1158644 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 122 | 4165830 | 4166105 | - | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 123 | 2268661 | 2268936 | + | NC_015968.1 | Enterobacter soli |
| 124 | 294071 | 294361 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 125 | 1447120 | 1447395 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 126 | 2231159 | 2231434 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 127 | 4045235 | 4045510 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 128 | 2234749 | 2235024 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 129 | 2909081 | 2909371 | - | NZ_LR134302.1 | Achromobacter spanius |
| 130 | 2225921 | 2226196 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 131 | 105808 | 106086 | - | NZ_CP025799.1 | Dickeya zeae |
| 132 | 768064 | 768339 | + | NZ_CP046914.1 | Paraburkholderia acidisoli |
| 133 | 3790495 | 3790770 | - | NZ_CP044060.1 | Aeromonas veronii |
| 134 | 3081593 | 3081883 | - | NZ_CP022048.2 | Brevundimonas vesicularis |
| 135 | 100950 | 101228 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 136 | 4549388 | 4549663 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 137 | 1752828 | 1753103 | + | NZ_CP030880.1 | Acinetobacter haemolyticus |
| 138 | 1557749 | 1558024 | + | NZ_LR134378.1 | Lautropia mirabilis |
| 139 | 614412 | 614687 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 140 | 983819 | 984094 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 141 | 516398 | 516673 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 142 | 120890 | 121180 | - | NZ_CP022749.1 | Sphingobium xenophagum |
| 143 | 37711 | 38001 | - | NZ_CP022747.1 | Sphingobium xenophagum |
| 144 | 715011 | 715286 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 145 | 5832307 | 5832540 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 146 | 1771674 | 1771949 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 147 | 909783 | 910058 | - | NZ_CP049136.1 | Paraburkholderia tropica |
| 148 | 2681571 | 2681849 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 149 | 2256981 | 2257259 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 150 | 158248 | 158520 | - | NZ_CP046912.1 | Paraburkholderia acidiphila |
| 151 | 3494779 | 3495054 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 152 | 80132 | 80410 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 153 | 670271 | 670546 | - | NZ_AP022188.1 | Aeromonas media |
| 154 | 4751928 | 4752206 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 155 | 4707504 | 4707782 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 156 | 82719 | 82997 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 157 | 2838203 | 2838478 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 158 | 660447 | 660722 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 159 | 4356703 | 4356981 | + | NZ_LT615367.1 | Dickeya aquatica |
| 160 | 5001487 | 5001762 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 161 | 3385807 | 3386082 | + | NZ_CP040449.1 | Aeromonas simiae |
| 162 | 3069893 | 3070180 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 163 | 883793 | 884068 | + | NZ_CP048044.1 | Xanthomonas citri |
| 164 | 4229066 | 4229344 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 165 | 673167 | 673442 | + | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
| 166 | 2867531 | 2867806 | + | NZ_CP013729.1 | Roseateles depolymerans |
| 167 | 143609 | 143869 | - | NC_007618.1 | Brucella abortus 2308 |
| 168 | 4587769 | 4588044 | + | NZ_CP016878.1 | Xanthomonas hortorum |
| 169 | 4006866 | 4007141 | - | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 170 | 942644 | 942919 | + | NZ_CP072268.1 | Xanthomonas euvesicatoria pv. alfalfae |
| 171 | 1800603 | 1800845 | + | NZ_CP018787.1 | Oxalobacter formigenes |
| 172 | 2597079 | 2597354 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 173 | 3626686 | 3626961 | - | NZ_LT853882.1 | Xanthomonas fragariae |
| 174 | 1988437 | 1988712 | - | NZ_CP018725.1 | Xanthomonas vesicatoria ATCC 35937 |
| 175 | 1856932 | 1857192 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 176 | 3620959 | 3621234 | - | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 177 | 1409041 | 1409274 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 178 | 923015 | 923290 | + | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 179 | 2577321 | 2577599 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 180 | 143709 | 143972 | - | NZ_CP035710.1 | Sphaerotilus natans subsp. sulfidivorans |
| 181 | 6008959 | 6009243 | + | NZ_CP017147.1 | Bosea vaviloviae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034036.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF08240.14 | 0.67 | 118 | 35.0 | same-strand | Alcohol dehydrogenase GroES-like domain |
| 2 | PF00107.28 | 0.75 | 131 | 35 | same-strand | Zinc-binding dehydrogenase |
| 3 | PF13602.8 | 0.7 | 122 | 34 | same-strand | Zinc-binding dehydrogenase |
++ More..