ProsmORF-pred
Result : Q44556
Protein Information
Information Type Description
Protein name Putative RNA-binding protein RbpD
NCBI Accession ID BA000019.2
Organism Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Left 4843778
Right 4844062
Strand -
Nucleotide Sequence ATGACTATCTACGTTGGAAATCTCTCATACCGCGCCACCGAAGCAGACTTAAAAGCCGTATTTGCAGACTACGGTGAGGTCAAAAGAGTCGTATTACCTACAGACCGTGAAACCGGTCGGATGCGTGGTTTTGCCTTTGTTGAAATGAATGAAGATGCCCAAGAAGATGCAGCTATTACCGAATTAGATGGTGCAGAATGGATGGGTCGTCAGCTGAGAGTCAATAAAGCTAAACCGCGAGAAGATGACCGACGAGGTAGTTGGGGTAAAAAACAAGATTATTAA
Sequence MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITELDGAEWMGRQLRVNKAKPREDDRRGSWGKKQDY
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl17169. Profile Description: RNA recognition motif (RRM) superfamily. Crp79, also called meiotic expression up-regulated protein 5 (Mug5), or polyadenylate-binding protein crp79, or PABP, or poly(A)-binding protein, is an auxiliary mRNA export factor that binds the poly(A) tail of mRNA and is involved in the export of mRNA from the nucleus to the cytoplasm. Mug28 is a meiosis-specific protein that regulates spore wall formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the three RRM motif.
Pubmed ID 11759840
Domain CDD:418427
Functional Category RNA-binding
Uniprot ID Q44556
ORF Length (Amino Acid) 94
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Conservation Analysis
Conservation Analysis
No. of Species: 144
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 3389630 3389914 + NZ_CP047242.1 Trichormus variabilis 0441
2 1319585 1319884 - NZ_CP047242.1 Trichormus variabilis 0441
3 4581774 4582079 - NZ_CP054698.1 Nostoc edaphicum CCNP1411
4 3541408 3541719 + NZ_CP054698.1 Nostoc edaphicum CCNP1411
5 2164851 2165156 + NZ_CP054698.1 Nostoc edaphicum CCNP1411
6 474930 475250 + NZ_CP054698.1 Nostoc edaphicum CCNP1411
7 2081263 2081550 - NC_019751.1 Calothrix sp. PCC 6303
8 62512 62808 + NC_019751.1 Calothrix sp. PCC 6303
9 1165936 1166235 + NC_014248.1 'Nostoc azollae' 0708
10 4768960 4769265 - NC_014248.1 'Nostoc azollae' 0708
11 930943 931221 - NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1
12 1561734 1562030 - NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1
13 2898959 2899270 + NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1
14 6759493 6759780 - NC_019729.1 Oscillatoria nigro-viridis PCC 7112
15 6788617 6788925 - NC_019729.1 Oscillatoria nigro-viridis PCC 7112
16 2792385 2792681 - NC_019695.1 Chroococcidiopsis thermalis PCC 7203
17 6085612 6085917 - NC_019695.1 Chroococcidiopsis thermalis PCC 7203
18 4492472 4492783 + NC_019695.1 Chroococcidiopsis thermalis PCC 7203
19 2797509 2797778 - NC_019695.1 Chroococcidiopsis thermalis PCC 7203
20 1576477 1576725 - NZ_AP014638.1 Leptolyngbya boryana IAM M-101
21 2170096 2170392 - NZ_AP014638.1 Leptolyngbya boryana IAM M-101
22 52530 52829 + NZ_AP014638.1 Leptolyngbya boryana IAM M-101
23 51956 52261 - NZ_AP014638.1 Leptolyngbya boryana IAM M-101
24 2461089 2461391 - NZ_AP014638.1 Leptolyngbya boryana IAM M-101
25 2950519 2950833 + NC_010628.1 Nostoc punctiforme PCC 73102
26 2014474 2014722 + NC_009925.1 Acaryochloris marina MBIC11017
27 2656095 2656382 + NC_009925.1 Acaryochloris marina MBIC11017
28 556808 557095 + NC_009925.1 Acaryochloris marina MBIC11017
29 5609853 5610113 - NC_009925.1 Acaryochloris marina MBIC11017
30 2214129 2214413 - NZ_AP018202.1 Thermostichus vulcanus NIES-2134
31 215663 215935 - NZ_AP018202.1 Thermostichus vulcanus NIES-2134
32 8073349 8073648 - NZ_CP024785.1 Nostoc flagelliforme CCNUN1
33 1916010 1916309 + NZ_CP024785.1 Nostoc flagelliforme CCNUN1
34 2345110 2345394 - NC_004113.1 Thermosynechococcus vestitus BP-1
35 1505782 1506054 + NC_004113.1 Thermosynechococcus vestitus BP-1
36 1808577 1808864 + NZ_CP018092.1 Synechococcus lividus PCC 6715
37 1414466 1414711 + NZ_CP018092.1 Synechococcus lividus PCC 6715
38 4984755 4985051 - NC_019689.1 Pleurocapsa sp. PCC 7327
39 4045779 4046072 - NC_019689.1 Pleurocapsa sp. PCC 7327
40 3080033 3080332 - NC_019689.1 Pleurocapsa sp. PCC 7327
41 136339 136620 - NC_019689.1 Pleurocapsa sp. PCC 7327
42 3879202 3879501 + NC_019689.1 Pleurocapsa sp. PCC 7327
43 2601475 2601771 - NZ_CP021983.2 Halomicronema hongdechloris C2206
44 1793359 1793646 - NZ_CP021983.2 Halomicronema hongdechloris C2206
45 4535236 4535481 + NZ_CP021983.2 Halomicronema hongdechloris C2206
46 1842938 1843255 + NC_011729.1 Gloeothece citriformis PCC 7424
47 723455 723787 - NC_011729.1 Gloeothece citriformis PCC 7424
48 1193300 1193590 - NC_011729.1 Gloeothece citriformis PCC 7424
49 4829678 4829971 - NC_011729.1 Gloeothece citriformis PCC 7424
50 3169315 3169608 - NC_011729.1 Gloeothece citriformis PCC 7424
51 1165823 1166134 + NC_019753.1 Crinalium epipsammum PCC 9333
52 54743 55012 - NC_009926.1 Acaryochloris marina MBIC11017
53 90919 91206 - NC_009926.1 Acaryochloris marina MBIC11017
54 67539 67826 - NC_009926.1 Acaryochloris marina MBIC11017
55 1790798 1791088 - NC_019748.1 Stanieria cyanosphaera PCC 7437
56 41789 42097 - NC_019748.1 Stanieria cyanosphaera PCC 7437
57 3628951 3629235 - NC_019748.1 Stanieria cyanosphaera PCC 7437
58 1996936 1997226 - NC_019748.1 Stanieria cyanosphaera PCC 7437
59 44243 44548 - NC_019776.1 Cyanobacterium aponinum PCC 10605
60 35997 36242 - NC_019776.1 Cyanobacterium aponinum PCC 10605
61 6163857 6164156 + NZ_CP031941.1 Nostoc sphaeroides
62 566 853 + NC_009929.1 Acaryochloris marina MBIC11017
63 222611 222844 + NC_009929.1 Acaryochloris marina MBIC11017
64 1482862 1483155 + NC_014501.1 Gloeothece verrucosa PCC 7822
65 5102540 5102836 + NC_014501.1 Gloeothece verrucosa PCC 7822
66 4216173 4216475 + NC_010296.1 Microcystis aeruginosa NIES-843
67 1810909 1811202 + NC_010296.1 Microcystis aeruginosa NIES-843
68 1810076 1810369 + NC_010296.1 Microcystis aeruginosa NIES-843
69 2935188 2935484 + NC_010296.1 Microcystis aeruginosa NIES-843
70 72752 73027 - NC_009928.1 Acaryochloris marina MBIC11017
71 1737734 1738021 - NC_019780.1 Dactylococcopsis salina PCC 8305
72 158665 158964 - NC_019780.1 Dactylococcopsis salina PCC 8305
73 1335006 1335296 + NZ_CP042326.1 Euhalothece natronophila Z-M001
74 2260721 2261008 - NZ_CP042326.1 Euhalothece natronophila Z-M001
75 10409 10696 + NZ_CP042329.1 Euhalothece natronophila Z-M001
76 2865582 2865857 - NC_022600.1 Gloeobacter kilaueensis JS1
77 219183 219473 + NC_019675.1 Cyanobium gracile PCC 6307
78 977493 977771 + NZ_CP032101.1 Malaciobacter marinus
79 1007398 1007676 + NZ_CP042812.1 Malaciobacter canalis
80 47747 48028 + NZ_CP032099.1 Aliarcobacter skirrowii CCUG 10374
81 1110206 1110502 - NC_005042.1 Prochlorococcus marinus subsp. marinus str. CCMP1375
82 2275692 2275973 - NZ_CP054051.1 Aliarcobacter cibarius
83 170530 170796 + NZ_CP053836.1 Halarcobacter ebronensis
84 1239096 1239350 + NC_012115.1 Nautilia profundicola AmH
85 45777 46058 + NZ_CP036246.2 [Arcobacter] porcinus
86 1980185 1980463 - NC_014166.1 Arcobacter nitrofigilis DSM 7299
87 1394717 1394971 + NZ_CP027432.2 Caminibacter pacificus
88 1204383 1204658 + NZ_CP048878.1 Spartinivicinus ruber
89 878238 878516 + NZ_CP032098.1 Malaciobacter molluscorum LMG 25693
90 911675 911953 + NZ_CP031218.1 Malaciobacter halophilus
91 1597180 1597455 + NZ_CP045504.1 Desulfovibrio sulfodismutans DSM 3696
92 4062492 4062776 + NZ_CP045504.1 Desulfovibrio sulfodismutans DSM 3696
93 2201052 2201333 - NZ_CP053837.1 Aliarcobacter faecis
94 45723 45989 - NZ_CP031217.1 Halarcobacter bivalviorum
95 1966347 1966628 + NZ_CP032823.1 Aliarcobacter cryaerophilus ATCC 43158
96 985882 986172 + NZ_CP031219.1 Malaciobacter mytili LMG 24559
97 1929712 1929990 + NZ_AP023212.1 Hydrogenimonas urashimensis
98 1326481 1326765 - NC_013943.1 Denitrovibrio acetiphilus DSM 12809
99 994998 995267 - NC_013943.1 Denitrovibrio acetiphilus DSM 12809
100 2656630 2656914 - NC_013943.1 Denitrovibrio acetiphilus DSM 12809
101 2314915 2315166 + NC_017310.1 Desulfovibrio vulgaris RCH1
102 1346876 1347148 + NC_017310.1 Desulfovibrio vulgaris RCH1
103 307147 307395 + NC_014836.1 Desulfurispirillum indicum S5
104 120963 121211 + NC_014836.1 Desulfurispirillum indicum S5
105 121321 121569 + NC_014836.1 Desulfurispirillum indicum S5
106 543327 543575 + NZ_CP053828.1 Campylobacter hyointestinalis subsp. lawsonii
107 335656 335925 - NZ_CP014230.1 Desulfomicrobium orale DSM 12838
108 1463897 1464160 - NZ_CP014230.1 Desulfomicrobium orale DSM 12838
109 749122 749376 - NC_005090.1 Wolinella succinogenes DSM 1740
110 4569118 4569363 + NZ_LN877293.1 Bacteroides fragilis
111 2572255 2572500 - NZ_LN877293.1 Bacteroides fragilis
112 2680073 2680318 + NZ_LN877293.1 Bacteroides fragilis
113 636733 636978 + NC_009614.1 Phocaeicola vulgatus ATCC 8482
114 774049 774294 + NC_009614.1 Phocaeicola vulgatus ATCC 8482
115 685373 685618 + NZ_LR699004.1 Phocaeicola dorei
116 826003 826248 + NZ_LR699004.1 Phocaeicola dorei
117 1232262 1232510 - NZ_CP059443.1 Campylobacter fetus
118 1859386 1859655 + NZ_CP011125.1 Sandaracinus amylolyticus
119 1359192 1359440 - NZ_CP010995.1 Campylobacter iguaniorum
120 586998 587243 + NZ_CP012543.1 Campylobacter rectus
121 8750823 8751098 + NZ_CP042425.1 Limnoglobus roseus
122 1679106 1679378 - NC_019940.1 Thioflavicoccus mobilis 8321
123 320005 320250 - NZ_CP015401.2 Bacteroides caecimuris
124 2116875 2117120 - NZ_CP015401.2 Bacteroides caecimuris
125 29275 29556 - NZ_CP031367.1 Aliarcobacter trophiarum LMG 25534
126 7042045 7042338 - NZ_AP017422.1 Filimonas lacunae
127 593681 593932 - NZ_CP040463.1 Caminibacter mediatlanticus TB-2
128 752465 752710 - NZ_CP012547.1 Campylobacter pinnipediorum subsp. pinnipediorum
129 1631468 1631752 + NZ_CP040449.1 Aeromonas simiae
130 127200 127466 + NZ_CP053835.1 Arcobacter defluvii
131 6975 7289 + NC_016609.1 Niastella koreensis GR20-10
132 4025763 4026050 - NC_016609.1 Niastella koreensis GR20-10
133 3142623 3142901 + NC_015152.1 Sphaerochaeta globosa str. Buddy
134 2793769 2794002 + NC_015152.1 Sphaerochaeta globosa str. Buddy
135 1127811 1128056 - NC_015152.1 Sphaerochaeta globosa str. Buddy
136 3552824 3553123 + NZ_CP026538.1 Desulfovibrio carbinolicus
137 59810 60067 - NZ_CP026538.1 Desulfovibrio carbinolicus
138 997832 998110 - NZ_CP026538.1 Desulfovibrio carbinolicus
139 1190113 1190412 - NC_012796.1 Desulfovibrio magneticus RS-1
140 174676 174933 + NC_012796.1 Desulfovibrio magneticus RS-1
141 1281741 1282019 - NC_012796.1 Desulfovibrio magneticus RS-1
142 814098 814361 - NC_007519.1 Desulfovibrio alaskensis G20
143 5142832 5143077 - NZ_CP012938.1 Bacteroides ovatus
144 1039792 1040037 - NZ_CP012938.1 Bacteroides ovatus
145 70343 70609 + NC_017187.1 Aliarcobacter butzleri ED-1
146 616581 616826 + NZ_CP012544.1 Campylobacter showae
147 63073 63339 + NZ_CP030944.1 Arcobacter aquimarinus
148 4033423 4033683 + NZ_CP013118.1 Salinivirga cyanobacteriivorans
149 1182028 1182330 - NC_016629.1 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay
150 521718 521963 + NZ_CP012541.1 Campylobacter concisus
151 104286 104552 + NZ_CP032100.1 Arcobacter suis CECT 7833
152 2409432 2409677 + NZ_CP039543.1 Desulfovibrio marinus
153 2241083 2241346 - NZ_CP039543.1 Desulfovibrio marinus
154 227117 227368 - NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
155 2283205 2283456 - NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
156 948540 948791 + NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
157 599561 599806 + NZ_CP053826.1 Campylobacter curvus
158 62197 62463 + NZ_CP053833.1 Arcobacter cloacae
159 124291 124557 + NZ_CP053840.1 Arcobacter venerupis
160 2573321 2573581 + NC_016803.1 Pseudodesulfovibrio mercurii
161 1208206 1208472 - NC_016803.1 Pseudodesulfovibrio mercurii
162 3572235 3572480 - NC_016803.1 Pseudodesulfovibrio mercurii
163 270003 270251 + NC_014933.1 Bacteroides helcogenes P 36-108
164 1060188 1060436 + NZ_AP017378.1 Desulfovibrio ferrophilus
165 1657835 1658098 - NZ_AP017378.1 Desulfovibrio ferrophilus
166 525108 525371 + NZ_AP017378.1 Desulfovibrio ferrophilus
167 874222 874485 + NZ_AP017378.1 Desulfovibrio ferrophilus
168 339439 339714 + NC_013851.1 Allochromatium vinosum DSM 180
169 137342 137608 - NZ_CP014229.1 Desulfovibrio fairfieldensis
170 718804 719067 + NZ_CP014229.1 Desulfovibrio fairfieldensis
171 1313869 1314114 - NZ_CP053831.1 Campylobacter mucosalis
172 1735082 1735321 - NZ_AP018724.1 Sulfurivermis fontis
173 14228 14494 + NC_020127.1 Lawsonia intracellularis N343
174 3169215 3169487 - NZ_CP007031.1 Marichromatium purpuratum 984
175 2977159 2977422 - NC_014844.1 Pseudodesulfovibrio aespoeensis Aspo-2
176 921691 921954 + NC_014844.1 Pseudodesulfovibrio aespoeensis Aspo-2
177 3573032 3573307 + NC_014844.1 Pseudodesulfovibrio aespoeensis Aspo-2
178 2852159 2852434 + NZ_CP039268.1 Thermochromatium tepidum ATCC 43061
179 874550 874849 - NZ_AP017928.1 Methylocaldum marinum
180 1707937 1708200 - NC_012881.1 Maridesulfovibrio salexigens DSM 2638
181 3423100 3423363 - NC_012881.1 Maridesulfovibrio salexigens DSM 2638
182 2632252 2632500 - NC_012881.1 Maridesulfovibrio salexigens DSM 2638
183 2018601 2018864 + NC_013223.1 Desulfohalobium retbaense DSM 5692
184 1189421 1189666 + NZ_CP054012.1 Parabacteroides distasonis
185 2403338 2403586 + NC_013173.1 Desulfomicrobium baculatum DSM 4028
186 1402871 1403146 - NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens
187 3342984 3343286 - NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens
188 2547682 2547969 - NC_010162.1 Sorangium cellulosum So ce56
189 906459 906749 + NZ_CP036278.1 Aeoliella mucimassa
190 2414331 2414624 - NC_018018.1 Bernardetia litoralis DSM 6794
191 367928 368203 - NZ_CP011971.1 Steroidobacter denitrificans
192 461515 461778 + NZ_CP011971.1 Steroidobacter denitrificans
193 4551287 4551532 + NZ_CP040530.1 Bacteroides thetaiotaomicron
194 2296893 2297138 - NZ_CP040530.1 Bacteroides thetaiotaomicron
195 462715 462960 + NZ_CP019684.1 Campylobacter sputorum bv. paraureolyticus LMG 11764
196 227354 227620 + NC_021291.1 Spiribacter salinus M19-40
197 1408290 1408547 + NC_006177.1 Symbiobacterium thermophilum IAM 14863
198 3378738 3379025 + NC_006177.1 Symbiobacterium thermophilum IAM 14863
199 1910516 1910782 - NC_006177.1 Symbiobacterium thermophilum IAM 14863
200 624229 624471 - NC_015318.1 Hippea maritima DSM 10411
201 2494547 2494828 - NC_014364.1 Sediminispirochaeta smaragdinae DSM 11293
202 4366600 4366866 - NC_014364.1 Sediminispirochaeta smaragdinae DSM 11293
203 4339131 4339412 + NC_014364.1 Sediminispirochaeta smaragdinae DSM 11293
204 1059680 1059940 - NC_002977.6 Methylococcus capsulatus str. Bath
205 420370 420636 + NZ_CP046400.1 Pseudodesulfovibrio cashew
206 177699 177944 - NZ_CP046400.1 Pseudodesulfovibrio cashew
207 733482 733754 + NC_018012.1 Thiocystis violascens DSM 198
208 2271530 2271835 - NC_013512.1 Sulfurospirillum deleyianum DSM 6946
209 1231015 1231269 + NZ_AP017470.1 Thermotomaculum hydrothermale
210 624362 624664 - NC_015577.1 Treponema azotonutricium ZAS-9
211 243601 243861 + NC_022664.1 Spiribacter curvatus
212 2956506 2956796 - NC_015732.1 Treponema caldarium DSM 7334
213 173442 173708 + NZ_CP041070.1 Arcobacter anaerophilus
214 1374009 1374293 + NC_017583.1 Spirochaeta thermophila DSM 6578
215 2293178 2293447 - NC_014365.1 Desulfarculus baarsii DSM 2075
216 1908007 1908252 + NZ_LT907975.1 Pseudodesulfovibrio profundus
217 716374 716619 + NC_014810.2 Helicobacter felis ATCC 49179
218 3502672 3502920 - NZ_CP027234.1 Bacteroides heparinolyticus
219 87121 87387 + NZ_CP035928.1 Malaciobacter pacificus
220 2503591 2503839 - NZ_CP027231.1 Bacteroides zoogleoformans
221 459704 459973 + NZ_CP014671.1 Immundisolibacter cernigliae
222 564277 564522 - NZ_AP018676.1 Helicobacter cinaedi
223 624992 625222 - NZ_LN907858.1 Helicobacter typhlonius
224 321685 321918 - NC_017735.1 Helicobacter cetorum MIT 99-5656
225 2672391 2672648 - NZ_CP019698.1 Desulfotomaculum ferrireducens
226 2613232 2613486 - NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
227 163879 164124 - NZ_CP014991.1 Helicobacter himalayensis
228 1074107 1074364 - NZ_CP045875.1 Heliorestis convoluta
229 2669859 2670095 - NC_010337.2 Heliomicrobium modesticaldum Ice1
230 6251013 6251246 - NZ_CP065050.1 Streptomyces solisilvae
231 514575 514805 + NZ_CP017237.1 Moorella thermoacetica
232 2738813 2739070 - NC_009253.1 Desulfotomaculum reducens MI-1
233 271157 271402 - NZ_CP031416.1 Gallaecimonas mangrovi
234 621095 621331 + NZ_CP046996.1 Dehalobacter restrictus
235 728247 728534 - NC_010729.1 Porphyromonas gingivalis ATCC 33277
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