Protein Information |
Information Type | Description |
---|---|
Protein name | Conjugal transfer protein TraD |
NCBI Accession ID | |
Organism | Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) |
Left | |
Right | |
Strand | |
Nucleotide Sequence | |
Sequence | MSKAMTSDARKKDTREKIELGGLIVKAGLRYEKRALLLGLLIDGERRLKGDEDERSRLTAIGVEAFGHDGE |
Source of smORF | Swiss-Prot |
Function | The ORF matches to the profile of cl05753. Profile Description: Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer. |
Pubmed ID | 8763954 |
Domain | CDD:414526 |
Functional Category | Others |
Uniprot ID | Q44361 |
ORF Length (Amino Acid) | 71 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 290112 | 290327 | - | NZ_CP071608.1 | Rhizobium binae |
2 | 150832 | 151047 | + | NZ_CP071609.1 | Rhizobium binae |
3 | 402851 | 403066 | - | NZ_CP017943.1 | Phyllobacterium zundukense |
4 | 54652 | 54867 | - | NZ_LR723673.1 | Pseudorhizobium flavum |
5 | 250401 | 250616 | - | NZ_CP071615.1 | Rhizobium bangladeshense |
6 | 42501 | 42716 | + | NZ_CP013109.1 | Sinorhizobium americanum |
7 | 130452 | 130667 | - | NZ_LR723671.1 | Pseudorhizobium flavum |
8 | 430422 | 430637 | - | NZ_CP041240.1 | Ensifer mexicanus |
9 | 66070 | 66285 | - | NZ_CP049245.1 | Rhizobium pseudoryzae |
10 | 525769 | 525984 | - | NC_020061.1 | Rhizobium tropici CIAT 899 |
11 | 192770 | 192985 | - | NC_020060.1 | Rhizobium tropici CIAT 899 |
12 | 410972 | 411187 | - | NZ_CP041239.1 | Ensifer mexicanus |
13 | 527739 | 527954 | - | NZ_CP032696.1 | Rhizobium jaguaris |
14 | 519608 | 519823 | - | NZ_CP020910.1 | Rhizobium etli |
15 | 1437501 | 1437716 | + | NZ_CP015882.1 | Ensifer adhaerens |
16 | 268787 | 269002 | + | NZ_CP048637.1 | Rhizobium oryzihabitans |
17 | 193769 | 193984 | - | NZ_CP006878.1 | Rhizobium gallicum bv. gallicum R602sp |
18 | 166077 | 166292 | + | NZ_CP071682.1 | Rhizobium ruizarguesonis |
19 | 120800 | 121015 | - | NC_007961.1 | Nitrobacter hamburgensis X14 |
20 | 14205 | 14420 | - | NZ_LT960615.1 | Hartmannibacter diazotrophicus |
21 | 483623 | 483838 | - | NZ_CP006879.1 | Rhizobium gallicum bv. gallicum R602sp |
22 | 110010 | 110225 | - | NC_015689.1 | Afipia carboxidovorans OM5 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF02534.16 | 1.0 | 17 | -13.0 | same-strand | Type IV secretory system Conjugative DNA transfer |
2 | PF12696.9 | 1.0 | 17 | -13.0 | same-strand | TraM recognition site of TraD and TraG |
3 | PF07820.14 | 0.94 | 16 | 5 | same-strand | TraC-like protein |
4 | PF03389.17 | 0.88 | 15 | 556.5 | opposite-strand | MobA/MobL family |
5 | PF13604.8 | 0.88 | 15 | 556.5 | opposite-strand | AAA domain |
6 | PF17841.3 | 0.82 | 14 | 556 | opposite-strand | BID domain of Bartonella effector protein (Bep) |
7 | PF13245.8 | 0.88 | 15 | 556.5 | opposite-strand | AAA domain |
8 | PF13538.8 | 0.88 | 15 | 557 | opposite-strand | UvrD-like helicase C-terminal domain |
9 | PF10502.11 | 0.76 | 13 | 3865 | opposite-strand | Signal peptidase, peptidase S26 |
10 | PF00795.24 | 0.82 | 14 | 4421.0 | opposite-strand | Carbon-nitrogen hydrolase |
11 | PF06871.13 | 0.71 | 12 | 5600.0 | opposite-strand | TraH 2 |