Result : Q44348
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Conjugal transfer protein TraC |
| NCBI Accession ID | AF010180.1 |
| Organism | Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) |
| Left | 2684 |
| Right | 2980 |
| Strand | - |
| Nucleotide Sequence | ATGAAGAAACCATCATCGAAGATCAGGGAAGAAATTGCCAGATTGCAGGACCAGCTGAAACAGGCCGAAACACGCGAGGCCGAACGAATCGGCAGGATTGCGTTGAAGGCCGGTCTTGGTGAAATCGACATCGAGGAGTCACAGCTTCAGGCAGCCTTCGAGGAAGTCGCCAAACGGTTTCGTGGCGGCAAGGGCTCGGCGACCGGAAAGAGACAAGCCGGAGAGAGCCGGACCGGTACCGAGCCGTCCGCGGCGCTCGCGTCTGGCGCGGATGAAGGCGGGTCTGGCGAGGCTTGA |
| Sequence | MKKPSSKIREEIARLQDQLKQAETREAERIGRIALKAGLGEIDIEESQLQAAFEEVAKRFRGGKGSATGKRQAGESRTGTEPSAALASGADEGGSGEA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl06725. Profile Description: TraC-like protein. conjugal transfer protein TraC; Provisional |
| Pubmed ID | 8763953 11743193 11743194 |
| Domain | CDD:384654 |
| Functional Category | Others |
| Uniprot ID | Q44348 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 12
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 54872 | 55168 | - | NZ_LR723673.1 | Pseudorhizobium flavum |
| 2 | 403071 | 403367 | - | NZ_CP017943.1 | Phyllobacterium zundukense |
| 3 | 130672 | 130968 | - | NZ_LR723671.1 | Pseudorhizobium flavum |
| 4 | 268486 | 268782 | + | NZ_CP048637.1 | Rhizobium oryzihabitans |
| 5 | 525989 | 526285 | - | NC_020061.1 | Rhizobium tropici CIAT 899 |
| 6 | 483843 | 484139 | - | NZ_CP006879.1 | Rhizobium gallicum bv. gallicum R602sp |
| 7 | 527959 | 528255 | - | NZ_CP032696.1 | Rhizobium jaguaris |
| 8 | 430642 | 430938 | - | NZ_CP041240.1 | Ensifer mexicanus |
| 9 | 165776 | 166072 | + | NZ_CP071682.1 | Rhizobium ruizarguesonis |
| 10 | 66290 | 66586 | - | NZ_CP049245.1 | Rhizobium pseudoryzae |
| 11 | 1437194 | 1437496 | + | NZ_CP015882.1 | Ensifer adhaerens |
| 12 | 250621 | 250917 | - | NZ_CP071615.1 | Rhizobium bangladeshense |
| 13 | 42200 | 42496 | + | NZ_CP013109.1 | Sinorhizobium americanum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR723673.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02534.16 | 1.0 | 12 | 207 | same-strand | Type IV secretory system Conjugative DNA transfer |
| 2 | PF12696.9 | 1.0 | 12 | 207 | same-strand | TraM recognition site of TraD and TraG |
| 3 | PF06412.13 | 1.0 | 12 | 5 | same-strand | Conjugal transfer protein TraD |
| 4 | PF03389.17 | 0.92 | 11 | 255.0 | opposite-strand | MobA/MobL family |
| 5 | PF13604.8 | 0.92 | 11 | 255.0 | opposite-strand | AAA domain |
| 6 | PF17841.3 | 0.83 | 10 | 255 | opposite-strand | BID domain of Bartonella effector protein (Bep) |
| 7 | PF13245.8 | 0.92 | 11 | 255.0 | opposite-strand | AAA domain |
| 8 | PF13538.8 | 0.83 | 10 | 255 | opposite-strand | UvrD-like helicase C-terminal domain |
| 9 | PF10502.11 | 0.83 | 10 | 3563 | opposite-strand | Signal peptidase, peptidase S26 |
| 10 | PF00795.24 | 0.83 | 10 | 4120 | opposite-strand | Carbon-nitrogen hydrolase |
| 11 | PF06871.13 | 0.75 | 9 | 5299.0 | opposite-strand | TraH 2 |
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