ProsmORF-pred
Result : Q3Z972
Protein Information
Information Type Description
Protein name 30S ribosomal protein S17
NCBI Accession ID CP000027.1
Organism Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) (Dehalococcoides ethenogenes (strain 195))
Left 450330
Right 450590
Strand +
Nucleotide Sequence ATGGAAAAAAATAAAACCCGAATCGGTCATGTGATCAGCGATAGGATGGAAAAAACCATTGTAGTGGGTATTGATGTTGCCAAGCGCCATCCCCTTTACAAAAAGACTTATCGCCGGACTATGAAATATCTGGTTCATGATGAAAAAAACGAAGCTAAAATTGGTGATATGATTGAAATAGTTAAATGCCGCCCCATCTCCAAGGGGAAATACTGGCGGCTCAACCGGATAATCACCAAGGGCCACATTGTTGCGGCTTAG
Sequence MEKNKTRIGHVISDRMEKTIVVGIDVAKRHPLYKKTYRRTMKYLVHDEKNEAKIGDMIEIVKCRPISKGKYWRLNRIITKGHIVAA
Source of smORF Swiss-Prot
Function One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_01345}.
Pubmed ID 15637277
Domain CDD:412327
Functional Category Ribosomal_protein
Uniprot ID Q3Z972
ORF Length (Amino Acid) 86
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 444
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 400984 401253 + NZ_CP006950.1 Dehalococcoides mccartyi CG4
2 223632 223886 + NC_022571.1 Clostridium saccharobutylicum DSM 13864
3 4497224 4497466 - NC_014393.1 Clostridium cellulovorans 743B
4 3533419 3533673 - NZ_CP030775.1 Clostridium butyricum
5 3266466 3266720 - NC_015687.1 Clostridium acetobutylicum DSM 1731
6 195569 195823 + NZ_CP043998.1 Clostridium diolis
7 3347081 3347335 - NZ_CP040924.1 Clostridium thermarum
8 198530 198784 + NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT)
9 2772013 2772222 - NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
10 3723861 3724115 + NZ_CP017269.1 Geosporobacter ferrireducens
11 2423225 2423479 - NZ_LR590481.1 Hathewaya histolytica
12 158166 158375 + NC_014098.1 Kyrpidia tusciae DSM 2912
13 271219 271473 + NZ_CP032416.1 Clostridium fermenticellae
14 151576 151785 + NZ_CP024955.1 Kyrpidia spormannii
15 337400 337615 + NZ_CP030777.1 Faecalibacterium prausnitzii
16 2660041 2660253 - NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
17 240491 240745 + NC_008593.1 Clostridium novyi NT
18 2657339 2657581 - NZ_HG917868.1 Clostridium bornimense
19 403536 403751 + NZ_CP025286.1 Ethanoligenens harbinense YUAN-3
20 2162137 2162391 - NZ_CP029487.1 Eubacterium maltosivorans
21 5284684 5284938 - NZ_CP020953.1 Clostridium drakei
22 4434309 4434563 - NZ_CP011803.1 Clostridium carboxidivorans P7
23 4639263 4639517 + NZ_CP009933.1 Clostridium scatologenes
24 3754853 3755107 - NC_014624.2 Eubacterium callanderi
25 1381072 1381326 + NZ_CP019962.1 Eubacterium limosum
26 3932411 3932665 - NZ_CP013019.1 Clostridium pasteurianum
27 652906 653160 + NZ_CP014176.1 Clostridium argentinense
28 249954 250208 + NZ_CP027286.1 Clostridium chauvoei
29 2014615 2014869 + NZ_CP023671.1 Clostridium septicum
30 617015 617224 + NZ_LS483443.1 Aggregatibacter segnis ATCC 33393
31 1192202 1192411 - NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
32 2096121 2096330 - NZ_CP016605.1 Bisgaardia hudsonensis
33 474123 474332 + NC_011830.1 Desulfitobacterium hafniense DCB-2
34 238025 238279 + NZ_CP017253.2 Clostridium taeniosporum
35 2970073 2970327 - NC_008261.1 Clostridium perfringens ATCC 13124
36 283572 283826 + NZ_CP014204.2 Clostridium baratii
37 1408508 1408717 + NC_010337.2 Heliomicrobium modesticaldum Ice1
38 4072003 4072260 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
39 2262200 2262454 - NZ_LT906477.1 Clostridium cochlearium
40 1008872 1009114 + NZ_CP034791.1 Caldicellulosiruptor changbaiensis
41 2400566 2400808 - NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
42 410658 410867 + NC_015172.1 Syntrophobotulus glycolicus DSM 8271
43 2015781 2016032 - NC_015436.1 Sphaerochaeta coccoides DSM 17374
44 2818255 2818473 - NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532
45 205575 205784 - NZ_CP009610.1 Haemophilus influenzae
46 301204 301413 - NZ_LS483458.1 Haemophilus haemolyticus
47 215869 216078 - NZ_LS483429.1 Haemophilus aegyptius
48 1823676 1823885 + NZ_CP040863.1 Rodentibacter heylii
49 4582188 4582397 + NZ_CP013652.1 Paenibacillus naphthalenovorans
50 19544 19756 + NZ_CP016180.1 Pasteurella skyensis
51 538922 539131 + NZ_CP061280.1 Mannheimia bovis
52 409986 410195 - NZ_LT906463.1 Haemophilus pittmaniae
53 4497656 4497916 - NC_016627.1 Acetivibrio clariflavus DSM 19732
54 765978 766232 + NZ_CP032364.1 Lachnoanaerobaculum umeaense
55 1399715 1399972 + NC_010814.1 Geobacter lovleyi SZ
56 2055862 2056071 - NZ_CP006944.1 Mannheimia varigena USDA-ARS-USMARC-1312
57 138099 138308 + NZ_CP011930.1 Herbaspirillum seropedicae
58 155450 155659 + NZ_CP013737.1 Herbaspirillum rubrisubalbicans M1
59 2073614 2073868 - NZ_CP012395.1 Clostridium autoethanogenum DSM 10061
60 4440844 4441098 - NC_014328.1 Clostridium ljungdahlii DSM 13528
61 964560 964769 + NZ_CP014159.1 Aerococcus christensenii
62 177371 177580 + NZ_CP037993.1 Herbaspirillum huttiense
63 2952638 2952853 - NC_014151.1 Cellulomonas flavigena DSM 20109
64 8373312 8373521 - NC_017672.3 Paenibacillus mucilaginosus K02
65 1088779 1088988 + NZ_CP028926.1 Pasteurella multocida
66 3243698 3243952 - NZ_CP040058.1 Anaerostipes rhamnosivorans
67 368778 369020 + NZ_CP036345.1 Anaerostipes caccae L1-92
68 3314967 3315185 - NC_016894.1 Acetobacterium woodii DSM 1030
69 309090 309344 + NZ_LR134531.1 Pragia fontium
70 1470082 1470327 - NC_016630.1 Filifactor alocis ATCC 35896
71 725536 725778 - NC_015707.1 Pseudothermotoga thermarum DSM 5069
72 2348633 2348884 + NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
73 507673 507915 + NZ_CP016502.1 Acetivibrio thermocellus DSM 2360
74 3368987 3369214 - NZ_CP025197.1 Acetivibrio saccincola
75 2014321 2014530 + NZ_LT906448.1 Pasteurella dagmatis
76 2370150 2370404 - NC_018664.1 Gottschalkia acidurici 9a
77 130642 130875 - NZ_LR134167.1 Avibacterium volantium
78 4936869 4937123 - NZ_LR134494.1 Serratia quinivorans
79 5008923 5009177 - NC_015567.1 Serratia plymuthica AS9
80 357780 358022 + NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11
81 2253033 2253275 - NZ_CP047602.1 Thermoanaerobacterium aotearoense
82 1522008 1522217 - NZ_CP014161.1 Aerococcus urinae
83 433967 434209 + NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571
84 270362 270616 + NZ_CP071325.1 Photobacterium ganghwense
85 2525708 2525962 + NZ_CP011078.1 Yersinia ruckeri
86 373429 373683 + NZ_LS483470.1 Leminorella richardii
87 2590098 2590352 - NZ_CP009787.1 Yersinia rohdei
88 3007617 3007871 + NZ_CP009781.1 Yersinia aldovae 670-83
89 975161 975415 - NZ_CP071376.1 Clostridium gasigenes
90 1021760 1021969 + NZ_LR134510.1 Actinobacillus delphinicola
91 1101162 1101422 + NZ_AP019004.1 Phascolarctobacterium faecium
92 4232125 4232358 - NZ_CP038498.1 Pectobacterium punjabense
93 1406590 1406823 + NZ_CP059066.1 Koleobacter methoxysyntrophicus
94 4556591 4556845 - NZ_CP015756.1 Clostridium estertheticum subsp. estertheticum
95 483415 483636 + NZ_CP006569.1 Sodalis praecaptivus
96 2505698 2505961 - NZ_CP036150.1 Oceanispirochaeta crateris
97 4737648 4737881 + NZ_CP015749.1 Pectobacterium parmentieri
98 1133750 1133983 - NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
99 173862 174116 + NZ_CP009056.1 Frischella perrara
100 3330533 3330787 - NZ_CP029185.2 Limnobaculum parvum
101 4143397 4143651 - NZ_CP034752.1 Jinshanibacter zhutongyuii
102 1708422 1708643 + NZ_CP026364.1 Proteus hauseri
103 139030 139284 + NZ_CP047349.1 Proteus terrae subsp. cibarius
104 2139579 2139833 + NZ_CP047495.1 Pectobacterium brasiliense
105 481358 481612 + NZ_CP051652.1 Pectobacterium carotovorum
106 3205369 3205623 - NZ_CP017482.1 Pectobacterium polaris
107 4392564 4392818 - NZ_CP034938.1 Pectobacterium odoriferum
108 2903296 2903550 + NZ_CP014136.1 Gibbsiella quercinecans
109 132527 132736 + NZ_CP019699.1 Novibacillus thermophilus
110 240969 241223 + NZ_LR134201.1 Cedecea lapagei
111 236447 236701 + NZ_CP023525.1 Cedecea neteri
112 1983397 1983651 + NZ_LT990039.1 Massilistercora timonensis
113 905374 905628 + NZ_CP015425.1 [Haemophilus] ducreyi
114 258088 258348 - NZ_CP015235.1 Rhodococcus fascians D188
115 1959551 1959805 - NZ_CP009170.1 Thermoanaerobacter kivui
116 805435 805689 - NZ_LT635475.1 Ezakiella massiliensis
117 337007 337261 + NZ_LN879430.1 Herbinix luporum
118 546906 547127 + NZ_CP036175.1 Klebsiella huaxiensis
119 1568210 1568464 + NZ_CP054043.1 Yersinia mollaretii ATCC 43969
120 311928 312182 + NZ_LR134373.1 Yersinia pseudotuberculosis
121 4364331 4364585 - NZ_CP043727.1 Yersinia canariae
122 336561 336815 + NZ_CP011118.1 Yersinia enterocolitica
123 4378437 4378691 - NZ_CP032487.1 Yersinia hibernica
124 1264054 1264308 - NZ_CP007230.1 Yersinia similis
125 140990 141244 + NZ_CP046293.1 Yersinia intermedia
126 2014518 2014772 + NZ_CP023706.1 Edwardsiella tarda
127 287479 287733 + NZ_CP016043.1 Edwardsiella hoshinae
128 3270342 3270554 - NC_006177.1 Symbiobacterium thermophilum IAM 14863
129 4032816 4033070 + NZ_CP067057.1 Rahnella aceris
130 2548148 2548357 - NC_021883.1 Mannheimia haemolytica USMARC_2286
131 256147 256401 + NZ_CP016786.1 Clostridium isatidis
132 4423783 4424004 - NZ_CP031560.1 Dickeya dianthicola
133 1643606 1643827 - NZ_CP015137.1 Dickeya solani IPO 2222
134 522407 522661 + NZ_CP065044.1 Pectobacterium aroidearum
135 4801192 4801446 + NZ_CP014137.1 Brenneria goodwinii
136 313675 313929 + NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
137 3799760 3800014 + NZ_CP027107.1 Cronobacter sakazakii
138 227017 227271 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
139 3886663 3886917 - NZ_CP012257.1 Cronobacter universalis NCTC 9529
140 3964018 3964272 - NZ_CP012264.1 Cronobacter condimenti 1330
141 80998 81252 + NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
142 376517 376771 + NZ_CP061527.1 Shigella dysenteriae
143 4053907 4054161 - NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
144 3951503 3951757 - NZ_LR134340.1 Escherichia marmotae
145 2369605 2369859 - NZ_CP057657.1 Escherichia fergusonii
146 3432697 3432951 - NC_004337.2 Shigella flexneri 2a str. 301
147 3448314 3448568 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
148 3424321 3424575 - NZ_AP014857.1 Escherichia albertii
149 4175962 4176216 - NZ_CP012871.1 [Enterobacter] lignolyticus
150 981421 981675 + NZ_CP051548.1 Phytobacter diazotrophicus
151 4183454 4183708 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
152 5142351 5142605 + NZ_CP011602.1 Phytobacter ursingii
153 3587132 3587353 + NC_010554.1 Proteus mirabilis HI4320
154 1967197 1967406 - NZ_CP016604.1 Otariodibacter oris
155 434573 434827 + NZ_CP054254.1 Klebsiella variicola
156 507757 507978 + NZ_CP060111.1 Klebsiella michiganensis
157 1441712 1441933 - NZ_CP053416.1 Salmonella bongori
158 3591581 3591802 - NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
159 157268 157528 + NZ_CP007445.1 Gilliamella apicola
160 2993417 2993671 - NZ_CP023529.1 Lelliottia amnigena
161 146757 147011 + NZ_CP007452.1 Peptoclostridium acidaminophilum DSM 3953
162 4806427 4806681 - NZ_LT906479.1 Serratia ficaria
163 4841846 4842055 - NZ_CP045293.1 Paenibacillus guangzhouensis
164 1939321 1939575 - NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3
165 2006648 2006902 - NC_013921.1 Thermoanaerobacter italicus Ab9
166 3631077 3631286 - NZ_CP033433.1 Cohnella candidum
167 697911 698165 + NZ_CP029206.1 Actinobacillus porcitonsillarum
168 489416 489670 + NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
169 2304090 2304350 - NC_014614.1 Acetoanaerobium sticklandii
170 389248 389463 - NC_014246.1 Mobiluncus curtisii ATCC 43063
171 4573016 4573270 - NC_009633.1 Alkaliphilus metalliredigens QYMF
172 1314985 1315239 - NZ_CP011254.1 Serratia fonticola
173 461719 461973 + NZ_CP045845.1 Kluyvera intermedia
174 3673435 3673689 - NZ_CP028842.1 Clostridium botulinum
175 396072 396293 + NZ_AP023184.1 Buttiauxella agrestis
176 419118 419372 + NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1
177 2289817 2290071 - NC_015958.1 Thermoanaerobacter wiegelii Rt8.B1
178 3818723 3818977 - NZ_CP009687.1 Clostridium aceticum
179 153085 153339 + NZ_CP034035.1 Brenneria rubrifaciens
180 4096649 4096903 - NZ_CP048796.1 Providencia vermicola
181 974249 974503 + NZ_CP029736.1 Providencia rettgeri
182 51019 51276 + NC_014833.1 Ruminococcus albus 7 = DSM 20455
183 2043076 2043330 + NZ_CP030753.1 Actinobacillus pleuropneumoniae
184 6128088 6128297 - NZ_AP019400.1 Cohnella abietis
185 4892898 4893152 - NZ_CP048784.1 Serratia liquefaciens
186 1386366 1386620 + NZ_CP007044.2 Chania multitudinisentens RB-25
187 757732 757986 + NC_014387.1 Butyrivibrio proteoclasticus B316
188 2118496 2118750 + NZ_CP042941.1 Atlantibacter hermannii
189 1657566 1657820 + NZ_LT556085.1 Citrobacter amalonaticus
190 428843 429097 + NZ_LR134475.1 Klebsiella aerogenes
191 4761886 4762140 + NC_013716.1 Citrobacter rodentium ICC168
192 1182466 1182720 + NZ_CP020388.1 Pluralibacter gergoviae
193 24745 24999 - NZ_CP045205.1 Citrobacter telavivensis
194 263773 264030 + NZ_CP013195.1 Prevotella enoeca
195 1194109 1194363 + NZ_CP023536.1 Providencia alcalifaciens
196 3564409 3564663 - NZ_CP031123.2 Providencia huaxiensis
197 2171098 2171352 - NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
198 427178 427432 + NZ_CP050508.1 Raoultella terrigena
199 644650 644865 + NZ_LS483423.1 Jonesia denitrificans
200 218448 218702 + NC_011837.1 Clostridium kluyveri NBRC 12016
201 2024879 2025133 - NZ_AP019007.1 Enterobacter oligotrophicus
202 4199040 4199294 - NZ_AP022508.1 Enterobacter bugandensis
203 4273027 4273281 - NZ_CP027986.1 Enterobacter sichuanensis
204 4291963 4292217 - NZ_CP017184.1 Enterobacter roggenkampii
205 449850 450104 + NZ_CP013990.1 Leclercia adecarboxylata
206 4306430 4306684 - NC_015968.1 Enterobacter soli
207 3007607 3007861 + NZ_CP025034.2 Enterobacter sp. SGAir0187
208 4395977 4396231 - NZ_CP009756.1 Enterobacter cloacae
209 2854524 2854778 - NZ_CP017279.1 Enterobacter ludwigii
210 4628080 4628334 - NZ_CP043318.1 Enterobacter chengduensis
211 425038 425292 + NZ_CP065838.1 Klebsiella quasipneumoniae
212 4865940 4866194 - NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
213 4402026 4402280 - NZ_CP009125.1 Pectobacterium atrosepticum
214 1311592 1311846 - NZ_CP027228.1 Mogibacterium diversum
215 577084 577341 + NZ_CP014223.1 Anaerotignum propionicum DSM 1682
216 849573 849830 - NC_021833.1 Spiroplasma diminutum CUAS-1
217 172923 173141 - NZ_CP050063.1 Spirosoma aureum
218 5532226 5532480 + NZ_CP014263.1 Spirosoma montaniterrae
219 4254949 4255203 - NZ_CP050150.1 Hafnia alvei
220 969791 970078 + NZ_CP039291.1 Cellulomonas shaoxiangyii
221 425611 425865 + NZ_CP041247.1 Raoultella electrica
222 1917662 1917916 - NZ_CP007715.1 Actinobacillus equuli subsp. equuli
223 1912364 1912618 - NZ_CP009159.1 Actinobacillus suis ATCC 33415
224 1552675 1552938 - NC_014758.1 Calditerrivibrio nitroreducens DSM 19672
225 1603939 1604148 - NZ_CP015031.1 Basfia succiniciproducens
226 2001572 2001781 - NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
227 4062326 4062580 - NC_013892.1 Xenorhabdus bovienii SS-2004
228 408424 408678 + NZ_CP035129.1 Kosakonia cowanii
229 4346682 4346936 - NC_009792.1 Citrobacter koseri ATCC BAA-895
230 3830669 3830923 + NZ_CP038469.1 Citrobacter tructae
231 2692899 2693153 - NZ_CP016337.1 Kosakonia sacchari
232 4442960 4443214 - NZ_CP063425.1 Kosakonia pseudosacchari
233 2832283 2832537 + NZ_CP044098.1 Citrobacter portucalensis
234 2250336 2250590 - NZ_CP033744.1 Citrobacter freundii
235 3561706 3561960 + NZ_CP045300.1 Kosakonia arachidis
236 340384 340638 + NZ_CP071320.1 Serratia ureilytica
237 4070248 4070502 - NZ_CP016948.1 Serratia surfactantfaciens
238 4842150 4842404 - NZ_CP038662.1 Serratia nematodiphila
239 454045 454299 + NZ_CP014007.2 Kosakonia oryzae
240 4869941 4870195 - NZ_CP015113.1 Kosakonia radicincitans
241 1115185 1115439 - NZ_CP065640.1 Serratia rubidaea
242 58220 58429 - NZ_CP018787.1 Oxalobacter formigenes
243 503645 503872 - NZ_CP036170.1 [Clostridium] scindens ATCC 35704
244 3819381 3819629 + NZ_CP051883.1 Aeromonas salmonicida
245 1252559 1252813 - NZ_CP026047.1 Raoultella planticola
246 463950 464204 + NZ_CP046672.1 Raoultella ornithinolytica
247 622476 622694 + NC_017583.1 Spirochaeta thermophila DSM 6578
248 1172455 1172670 - NZ_CP062938.1 Bifidobacterium eulemuris
249 1685871 1686086 + NZ_CP062948.1 Bifidobacterium lemurum
250 455248 455466 + NC_012880.1 Musicola paradisiaca Ech703
251 4054685 4054939 + NZ_CP045769.1 Enterobacter cancerogenus
252 2101152 2101394 - NZ_HF545616.1 Ruminococcus bicirculans
253 339738 339995 + NC_012778.1 [Eubacterium] eligens ATCC 27750
254 4179152 4179406 - NZ_CP020559.1 Clostridium formicaceticum
255 727023 727271 + NC_008609.1 Pelobacter propionicus DSM 2379
256 3486224 3486478 - NZ_FO704551.1 Xenorhabdus poinarii G6
257 275911 276165 + NZ_FO704550.1 Xenorhabdus doucetiae
258 4102234 4102488 - NZ_LS483422.1 Providencia heimbachae
259 3876660 3876917 - NZ_LR027880.1 Roseburia intestinalis L1-82
260 79585 79803 + NZ_CP053435.1 Spirosoma taeanense
261 1496103 1496378 - NZ_CP011390.1 Flavisolibacter tropicus
262 2571555 2571809 + NZ_CP070062.1 Coprococcus comes
263 911835 912050 + NC_015671.1 Cellulomonas gilvus ATCC 13127
264 4872507 4872761 - NC_012962.1 Photorhabdus asymbiotica
265 4500749 4501006 - NC_010001.1 Lachnoclostridium phytofermentans ISDg
266 146320 146529 - NZ_CP019323.1 Companilactobacillus allii
267 2135424 2135687 - NZ_CP029256.1 Christensenella minuta
268 392369 392623 + NZ_CP054058.1 Scandinavium goeteborgense
269 3137291 3137548 - NZ_LR699011.1 Roseburia hominis
270 3165562 3165816 - NZ_CP060401.1 Xenorhabdus nematophila
271 4192195 4192449 - NZ_CP072455.1 Xenorhabdus budapestensis
272 1681748 1682002 - NZ_CP011104.1 Photorhabdus thracensis
273 5493585 5493818 - NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
274 2609071 2609328 - NC_015385.1 Treponema succinifaciens DSM 2489
275 3588769 3589017 - NZ_CP040449.1 Aeromonas simiae
276 1807702 1807911 - NZ_CP041217.1 Saccharibacillus brassicae
277 1725994 1726227 - NZ_CP014209.1 Isoptericola dokdonensis DS-3
278 3950137 3950391 - NZ_CP019870.1 Clostridioides difficile
279 315080 315289 + NC_019897.1 Thermobacillus composti KWC4
280 3242227 3242475 - NZ_CP065745.1 Aeromonas allosaccharophila
281 2801817 2802035 - NZ_CP051884.1 Cellulomonas taurus
282 3412179 3412388 - NZ_CP018845.1 Herbaspirillum robiniae
283 3429937 3430191 + NZ_LT635479.1 Lachnoclostridium phocaeense
284 2178210 2178464 - NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85
285 1276906 1277193 + NZ_CP025333.1 Brevibacterium aurantiacum
286 2809006 2809224 - NC_015578.1 Treponema primitia ZAS-2
287 342509 342775 + NZ_CP059276.1 Lactobacillus taiwanensis
288 337804 338070 + NC_008530.1 Lactobacillus gasseri ATCC 33323 = JCM 1131
289 340751 341017 + NZ_AP018549.1 Lactobacillus paragasseri
290 2518461 2518727 - NZ_LR131272.1 Arthrobacter agilis
291 408367 408585 + NZ_CP048436.1 Flavonifractor plautii
292 1056468 1056686 - NZ_AP022589.1 Mycolicibacter minnesotensis
293 457490 457708 - NZ_CP020104.1 Spirosoma aerolatum
294 628567 628782 - NZ_CP009312.1 Lawsonella clevelandensis
295 542123 542392 + NZ_CP031518.1 Treponema ruminis
296 1174636 1174845 + NZ_CP022121.1 Dehalobacterium formicoaceticum
297 404194 404409 + NZ_AP012325.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
298 437269 437484 + NZ_CP028341.1 Bifidobacterium adolescentis
299 3073234 3073485 - NC_015152.1 Sphaerochaeta globosa str. Buddy
300 249771 249980 + NZ_CP034235.1 Paenibacillus psychroresistens
301 2773253 2773519 - NZ_CP031425.1 Microbacterium foliorum
302 719587 719820 + NC_015588.1 Isoptericola variabilis 225
303 57605 57826 + NZ_LR215023.1 Mycoplasma iowae
304 2726434 2726649 + NZ_AP022572.1 Mycobacterium shottsii
305 3161093 3161347 - NZ_CP016176.1 Xenorhabdus hominickii
306 923372 923587 + NC_016048.1 Oscillibacter valericigenes Sjm18-20
307 697749 697967 + NC_013530.1 Xylanimonas cellulosilytica DSM 15894
308 444470 444685 + NZ_CP025199.1 Bifidobacterium pseudocatenulatum
309 3481489 3481710 - NC_013961.1 Erwinia amylovora CFBP1430
310 3528128 3528349 - NC_010694.1 Erwinia tasmaniensis Et1/99
311 317134 317355 + NZ_CP023567.1 Erwinia pyrifoliae
312 3506542 3506760 + NZ_CP035495.1 Xylanimonas allomyrinae
313 1677410 1677661 + NZ_CP024699.1 Fusobacterium pseudoperiodonticum
314 1250945 1251160 + NZ_CP011454.1 Gemmatimonas phototrophica
315 1172778 1173044 - NZ_CP034413.2 Dysosmobacter welbionis
316 1232887 1233174 - NZ_CP007490.1 Rhodoluna lacicola
317 1279174 1279440 + NC_013947.1 Stackebrandtia nassauensis DSM 44728
318 444032 444304 + NC_015732.1 Treponema caldarium DSM 7334
319 2191090 2191368 - NC_022438.1 Leifsonia xyli subsp. cynodontis DSM 46306
320 561252 561461 + NZ_CP046996.1 Dehalobacter restrictus
321 1638979 1639188 + NZ_CP034248.1 Paenibacillus lentus
322 1501771 1502040 - NC_010644.1 Elusimicrobium minutum Pei191
323 684596 684811 - NZ_CP061344.1 Microbacterium hominis
324 3725397 3725606 + NZ_CP035492.1 Paenibacillus protaetiae
325 454572 454781 + NZ_CP017996.1 Companilactobacillus crustorum
326 1291324 1291539 + NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
327 2684006 2684221 + NZ_CP058277.1 Mycobacterium marinum
328 6313035 6313244 - NZ_CP048209.1 Paenibacillus lycopersici
329 3281153 3281371 - NZ_CP047180.1 Rathayibacter festucae
330 394571 394837 + NZ_CP044496.1 Lactobacillus acetotolerans
331 517847 518098 + NZ_CP068114.1 Fusobacterium canifelinum
332 569480 569731 + NZ_CP013336.1 Fusobacterium hwasookii ChDC F206
333 430163 430414 + NZ_LN831027.1 Fusobacterium nucleatum subsp. polymorphum
334 1532588 1532821 + NZ_CP035491.1 Agromyces protaetiae
335 403838 404104 + NZ_CP064760.1 Microbacterium schleiferi
336 485551 485766 + NZ_CP031423.1 Microbacterium lemovicicum
337 2768545 2768778 - NZ_CP039292.1 Actinomyces procaprae
338 3263037 3263291 - NZ_CP034161.1 Epilithonimonas vandammei
339 200975 201229 - NC_016893.1 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
340 2547861 2548115 - NZ_CP015067.2 Elizabethkingia anophelis
341 4172245 4172499 + NZ_CP014337.1 Elizabethkingia bruuniana
342 222960 223178 + NZ_CP058670.1 Chryseoglobus indicus
343 1976353 1976607 + NZ_LT906465.1 Chryseobacterium taklimakanense
344 3683482 3683703 - NZ_AP023213.1 Citrifermentans bremense
345 1102465 1102686 + NC_011146.1 Citrifermentans bemidjiense Bem
346 1650711 1650935 - NZ_CP036425.1 Poriferisphaera corsica
347 3824111 3824320 - NZ_CP012621.1 Zobellella denitrificans
348 1093660 1093914 - NZ_CP063145.1 Cruoricaptor ignavus
349 4044624 4044878 + NZ_LR134289.1 Chryseobacterium gleum
350 695656 695916 + NZ_LT635772.1 Anaerococcus mediterraneensis
351 872947 873219 - NZ_CP060716.1 Leucobacter denitrificans
352 1020202 1020420 + NZ_CP020715.1 Cnuibacter physcomitrellae
353 4309414 4309629 + NC_022663.1 Mycobacterium kansasii ATCC 12478
354 1377374 1377640 - NZ_CP029544.1 Lactobacillus helsingborgensis
355 1153108 1153320 + NZ_CP029176.1 Acidibrevibacterium fodinaquatile
356 1141659 1141913 - NC_017045.1 Riemerella anatipestifer ATCC 11845 = DSM 15868
357 2748905 2749159 - NZ_CP023049.2 Chryseobacterium piperi
358 814692 814946 - NZ_CP033920.1 Chryseobacterium carnipullorum
359 551684 551899 + NZ_CP044232.1 Microbacterium lushaniae
360 2042763 2042972 + NZ_CP021377.1 Oceanisphaera profunda
361 576159 576374 + NZ_CP038266.1 Microbacterium wangchenii
362 1658660 1658875 - NZ_CP032788.1 Corynebacterium xerosis
363 1514587 1514841 - NZ_CP015199.1 Chryseobacterium glaciei
364 2473717 2473926 + NZ_CP021376.1 Oceanisphaera avium
365 2746119 2746373 + NZ_LR134441.1 Kaistella antarctica
366 1721558 1721812 - NZ_LR134503.1 Kaistella jeonii
367 1841536 1841790 - NZ_CP034159.1 Kaistella carnis
368 748072 748326 + NZ_CP033929.1 Chryseobacterium indoltheticum
369 2548539 2548754 - NC_002977.6 Methylococcus capsulatus str. Bath
370 2742170 2742424 - NZ_CP050995.1 Chryseobacterium gallinarum
371 3177237 3177491 + NZ_CP022986.1 Chryseobacterium camelliae
372 1700084 1700338 + NZ_CP033932.1 Chryseobacterium bernardetii
373 821110 821325 + NC_015848.1 Mycobacterium canettii CIPT 140010059
374 791669 791926 - NZ_CP022378.1 Capnocytophaga cynodegmi
375 1985909 1986166 + NZ_CP022387.1 Capnocytophaga stomatis
376 1925167 1925418 - NC_014632.1 Ilyobacter polytropus DSM 2926
377 3174419 3174700 - NZ_CP068013.1 Paenarthrobacter ureafaciens
378 1390839 1391048 - NZ_CP034464.1 Undibacterium parvum
379 805951 806166 + NC_000962.3 Mycobacterium tuberculosis H37Rv
380 875599 875871 + NZ_CP035037.1 Leucobacter muris
381 1990175 1990453 - NZ_CP010904.1 Kiritimatiella glycovorans
382 497989 498246 + NZ_CP035934.2 Acinetobacter cumulans
383 329955 330164 + NZ_CP013235.1 Collimonas arenae
384 2108266 2108523 + NZ_CP022389.1 Capnocytophaga canimorsus
385 1882585 1882839 - NZ_LR215974.1 Chryseobacterium taihuense
386 4028955 4029209 - NZ_CP033914.1 Chryseobacterium shandongense
387 700092 700346 + NZ_LR134386.1 Chryseobacterium nakagawai
388 3434556 3434810 + NZ_CP031961.1 Pseudoalteromonas tunicata
389 6983001 6983219 + NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis
390 196727 196984 - NZ_CP071766.1 Acinetobacter towneri
391 2695739 2696014 - NC_015500.1 Treponema brennaborense DSM 12168
392 442350 442559 + NZ_CP013236.1 Collimonas pratensis
393 716496 716705 + NZ_CP013232.1 Collimonas fungivorans
394 2939677 2939886 + NZ_CP045798.1 Thermoanaerosceptrum fracticalcis
395 3680596 3680850 + NZ_CP033926.1 Chryseobacterium joostei
396 1835686 1835940 + NZ_CP033924.1 Chryseobacterium lactis
397 1346917 1347138 - NC_015318.1 Hippea maritima DSM 10411
398 2511805 2512032 + NC_021991.1 Acetobacter pasteurianus 386B
399 539026 539253 + NZ_CP015164.1 Acetobacter ascendens
400 1016637 1016864 + NZ_CP022374.1 Acetobacter oryzifermentans
401 411981 412238 + NZ_CP044483.1 Acinetobacter schindleri
402 2183317 2183532 - NZ_CP029543.1 Mycobacterium leprae
403 492893 493150 - NZ_CP012808.1 Acinetobacter equi
404 4148806 4149063 - NZ_AP014630.1 Acinetobacter guillouiae
405 454670 454927 + NZ_CP024632.1 Acinetobacter junii
406 463996 464259 + NZ_CP011542.1 Corynebacterium mustelae
407 4830871 4831089 - NZ_CP045309.1 Micromonospora terminaliae
408 3130059 3130316 - NC_005966.1 Acinetobacter baylyi ADP1
409 2476727 2476984 + NZ_CP040105.1 Acinetobacter nosocomialis M2
410 2394061 2394318 + NZ_CP070518.1 Acinetobacter calcoaceticus
411 442171 442428 + NZ_CP015121.1 Acinetobacter baumannii
412 476389 476646 + NZ_CP065820.1 Acinetobacter seifertii
413 458573 458830 + NC_014259.1 Acinetobacter oleivorans DR1
414 2362078 2362335 - NZ_CP045650.1 Acinetobacter wanghuae
415 3144640 3144897 - NZ_CP032134.1 Acinetobacter chinensis
416 2411908 2412126 - NZ_AP021875.1 Desulfosarcina widdelii
417 472117 472374 + NZ_CP016895.1 Acinetobacter larvae
418 476009 476266 + NZ_CP049801.1 Acinetobacter shaoyimingii
419 2726803 2727060 - NC_016603.1 Acinetobacter pittii PHEA-2
420 447188 447445 + NZ_CP053391.1 Acinetobacter lactucae
421 408145 408402 + NZ_CP030880.1 Acinetobacter haemolyticus
422 3535303 3535560 + NZ_CP041970.1 Acinetobacter dispersus
423 1713045 1713323 - NZ_LR699114.1 Aquicella lusitana
424 3539858 3540130 - NC_015577.1 Treponema azotonutricium ZAS-9
425 538334 538552 + NC_020302.1 Corynebacterium halotolerans YIM 70093 = DSM 44683
426 593898 594182 + NZ_AP014631.1 Mycoplasma canadense
427 344584 344850 + NZ_CP011546.1 Corynebacterium uterequi
428 1324215 1324457 - NC_004432.1 Mycoplasma penetrans HF-2
429 955726 955941 + NZ_AP018164.1 Mycobacterium shigaense
430 548781 549002 + NZ_CP029397.2 Acinetobacter defluvii
431 1763700 1763924 + NC_007964.1 Nitrobacter hamburgensis X14
432 1504770 1504994 + NC_007406.1 Nitrobacter winogradskyi Nb-255
433 2810852 2811067 - NZ_CP038213.1 Ornithinimicrobium flavum
434 3010451 3010669 + NZ_CP042968.1 Bradyrhizobium paxllaeri
435 239903 240157 - NC_018178.1 Melioribacter roseus P3M-2
436 3563515 3563739 - NZ_CP058907.1 Rhodopseudomonas palustris
437 1551942 1552193 - NZ_CP038241.1 Allofrancisella inopinata
438 7066704 7066949 - NZ_CP036353.1 Gimesia maris
439 143079 143312 - NZ_CP009654.1 Francisella frigiditurris
440 236102 236335 + NC_017449.1 Francisella hispaniensis
441 255739 255972 + NZ_CP016796.1 Francisella uliginis
442 241829 242062 + NC_015696.1 Francisella salina
443 1551945 1552178 - NZ_CP043552.1 Francisella marina
444 233936 234169 + NZ_CP022375.1 Francisella opportunistica
445 2715412 2715684 - NC_022097.1 Treponema pedis str. T A4
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_022571.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00203.23 0.98 437 1730.0 same-strand Ribosomal protein S19
2 PF00237.21 0.99 439 1365.5 same-strand Ribosomal protein L22p/L17e
3 PF00189.22 0.99 441 663.0 same-strand Ribosomal protein S3, C-terminal domain
4 PF07650.19 0.99 439 662.5 same-strand KH domain
5 PF00252.20 0.99 440 223 same-strand Ribosomal protein L16p/L10e
6 PF00831.25 1.0 443 21.0 same-strand Ribosomal L29 protein
7 PF00238.21 0.96 427 92.0 same-strand Ribosomal protein L14p/L23e
8 PF17136.6 0.93 414 471 same-strand Ribosomal proteins 50S L24/mitochondrial 39S L24
9 PF00467.31 0.71 316 462 same-strand KOW motif
10 PF00673.23 0.94 419 805.5 same-strand ribosomal L5P family C-terminus
11 PF00281.21 0.95 421 805.0 same-strand Ribosomal protein L5
12 PF00410.21 0.93 411 1682.0 same-strand Ribosomal protein S8
13 PF00253.23 0.84 373 1370.0 same-strand Ribosomal protein S14p/S29e
++ More..