Result : Q3Z8Y8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S16 |
| NCBI Accession ID | CP000027.1 |
| Organism | Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) (Dehalococcoides ethenogenes (strain 195)) |
| Left | 521409 |
| Right | 521657 |
| Strand | - |
| Nucleotide Sequence | ATGTTGAAAATCAGACTCACTCGTATCGGAGCCCCCAAGAAGCCTTGCTACCGGATAATCGTAACTGAGGCCCGTTCGCCGCGTGATGCCACTTATACGGACCTTGTCGGCACCTATAACCCCATGACTAATCCTGAAACTGTGGTAATAAACGCTGAAAAAGCCCTCTACTGGATTGGTAAAGGTGCTCAACCTACGGATACGGTTGCCCGTCTTTTGAAAAAGGCCGGCGTCGTTAATTCTAACTAA |
| Sequence | MLKIRLTRIGAPKKPCYRIIVTEARSPRDATYTDLVGTYNPMTNPETVVINAEKALYWIGKGAQPTDTVARLLKKAGVVNSN |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00368. Profile Description: Ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 15637277 |
| Domain | CDD:412339 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q3Z8Y8 |
| ORF Length (Amino Acid) | 82 |
++ More..
| Conservation Analysis |
No. of Species: 315
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 472065 | 472313 | - | NZ_CP006950.1 | Dehalococcoides mccartyi CG4 |
| 2 | 803920 | 804159 | + | NZ_CP018258.1 | Dehalogenimonas formicexedens |
| 3 | 514508 | 514750 | - | NC_014314.1 | Dehalogenimonas lykanthroporepellens BL-DC-9 |
| 4 | 1376885 | 1377127 | + | NZ_CP048649.1 | Aminipila butyrica |
| 5 | 2407157 | 2407402 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 6 | 1954699 | 1954965 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 7 | 2546670 | 2546888 | - | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 8 | 1965693 | 1965941 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 9 | 2793123 | 2793371 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 10 | 667863 | 668111 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 11 | 2221058 | 2221297 | - | NZ_CP048436.1 | Flavonifractor plautii |
| 12 | 1573996 | 1574214 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 13 | 2761507 | 2761725 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 14 | 1713084 | 1713302 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 15 | 1770172 | 1770462 | - | NC_013525.1 | Thermobaculum terrenum ATCC BAA-798 |
| 16 | 1573197 | 1573466 | - | NZ_CP034118.1 | Staphylospora marina |
| 17 | 1945422 | 1945667 | + | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 18 | 1887996 | 1888214 | - | NZ_HG917868.1 | Clostridium bornimense |
| 19 | 1362803 | 1363084 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 20 | 1218076 | 1218342 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 21 | 1166788 | 1167006 | - | NZ_CP016786.1 | Clostridium isatidis |
| 22 | 1302405 | 1302623 | + | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 23 | 2872750 | 2873037 | + | NC_014836.1 | Desulfurispirillum indicum S5 |
| 24 | 1403969 | 1404199 | - | NC_008593.1 | Clostridium novyi NT |
| 25 | 3743988 | 3744233 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 26 | 1659230 | 1659475 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 27 | 675130 | 675393 | + | NZ_LT906470.1 | Veillonella rodentium |
| 28 | 1547192 | 1547473 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 29 | 1050810 | 1051055 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 30 | 3619485 | 3619730 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 31 | 1951159 | 1951404 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 32 | 1492753 | 1492998 | - | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 33 | 2890617 | 2890862 | - | NZ_CP014150.1 | Paeniclostridium sordellii |
| 34 | 3094678 | 3094893 | - | NZ_CP014176.1 | Clostridium argentinense |
| 35 | 2826218 | 2826475 | - | NZ_AP021876.1 | Desulfosarcina ovata subsp. sediminis |
| 36 | 2009188 | 2009406 | + | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 37 | 1169491 | 1169736 | + | NC_014831.1 | Thermaerobacter marianensis DSM 12885 |
| 38 | 1545691 | 1545936 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 39 | 1379587 | 1379850 | - | NZ_AP022321.1 | Veillonella nakazawae |
| 40 | 1432476 | 1432739 | - | NZ_LR134375.1 | Veillonella dispar |
| 41 | 1491139 | 1491402 | - | NZ_LR778174.1 | Veillonella parvula |
| 42 | 3301025 | 3301279 | + | NZ_CP034437.1 | Paenibacillus albus |
| 43 | 2765183 | 2765437 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 44 | 1305721 | 1305966 | - | NZ_LR134512.1 | Streptococcus agalactiae |
| 45 | 1706881 | 1707123 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 46 | 1473898 | 1474164 | - | NC_013522.1 | Thermanaerovibrio acidaminovorans DSM 6589 |
| 47 | 2456849 | 2457103 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 48 | 1039972 | 1040217 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 49 | 1090747 | 1090965 | + | NC_015520.1 | Mahella australiensis 50-1 BON |
| 50 | 2379027 | 2379245 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 51 | 854699 | 854947 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 52 | 766359 | 766604 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 53 | 2171952 | 2172197 | + | NZ_CP053989.1 | Niallia circulans |
| 54 | 854051 | 854296 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 55 | 1669993 | 1670238 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 56 | 736361 | 736609 | + | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 57 | 1117729 | 1117959 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 58 | 2476360 | 2476608 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 59 | 2603503 | 2603775 | + | NZ_CP013023.1 | Paenibacillus bovis |
| 60 | 302035 | 302277 | - | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 61 | 1470522 | 1470764 | + | NZ_CP007514.1 | Rubrobacter radiotolerans |
| 62 | 1278549 | 1278767 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 63 | 1502814 | 1503062 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 64 | 1040598 | 1040843 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 65 | 2918717 | 2918965 | - | NZ_CP009788.1 | Geobacter pickeringii |
| 66 | 2527247 | 2527468 | - | NZ_CP028842.1 | Clostridium botulinum |
| 67 | 1879313 | 1879528 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 68 | 1444268 | 1444513 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 69 | 579618 | 579893 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 70 | 748165 | 748437 | + | NZ_LR134524.1 | Peptoniphilus harei |
| 71 | 2700641 | 2700886 | - | NZ_CP019870.1 | Clostridioides difficile |
| 72 | 617995 | 618240 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 73 | 139509 | 139754 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 74 | 428052 | 428297 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 75 | 1794948 | 1795193 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 76 | 1802554 | 1802799 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 77 | 579989 | 580216 | - | NZ_CP027226.1 | Fastidiosipila sanguinis |
| 78 | 1918935 | 1919189 | + | NZ_CP036259.1 | Sporomusa termitida |
| 79 | 2066730 | 2066975 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 80 | 774413 | 774658 | + | NC_012924.1 | Streptococcus suis SC84 |
| 81 | 959899 | 960144 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 82 | 1459617 | 1459862 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 83 | 3027549 | 3027794 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 84 | 2789376 | 2789621 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 85 | 1221728 | 1221970 | - | NZ_CP027228.1 | Mogibacterium diversum |
| 86 | 1040747 | 1040992 | - | NZ_CP017326.1 | Weissella soli |
| 87 | 1032191 | 1032439 | - | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 88 | 1145135 | 1145392 | - | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 89 | 747055 | 747300 | + | NZ_CP027563.1 | Weissella confusa |
| 90 | 4232745 | 4232990 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 91 | 822027 | 822245 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 92 | 6455014 | 6455262 | + | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 93 | 1026830 | 1027072 | + | NZ_CP011402.1 | Denitrobacterium detoxificans |
| 94 | 149719 | 149964 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 95 | 1616917 | 1617165 | + | NZ_CP043405.1 | Streptococcus ratti |
| 96 | 677850 | 678137 | + | NC_002939.5 | Geobacter sulfurreducens PCA |
| 97 | 1068508 | 1068759 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 98 | 1291877 | 1292125 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 99 | 1609149 | 1609394 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 100 | 2647560 | 2647799 | + | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 101 | 1038638 | 1038886 | - | NZ_LT906439.1 | Streptococcus merionis |
| 102 | 1431576 | 1431821 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 103 | 1396417 | 1396635 | + | NZ_CP043998.1 | Clostridium diolis |
| 104 | 1086292 | 1086537 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 105 | 1553898 | 1554146 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 106 | 1532051 | 1532299 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 107 | 1536516 | 1536764 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 108 | 1181299 | 1181544 | - | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 109 | 946301 | 946546 | + | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 110 | 2129679 | 2129897 | - | NZ_CP009687.1 | Clostridium aceticum |
| 111 | 621237 | 621488 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 112 | 1102829 | 1103077 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 113 | 1764120 | 1764365 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 114 | 388238 | 388483 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 115 | 1439280 | 1439525 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 116 | 1951200 | 1951439 | + | NZ_CP045875.1 | Heliorestis convoluta |
| 117 | 1478145 | 1478390 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 118 | 894199 | 894444 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 119 | 1688663 | 1688881 | - | NZ_CP014204.2 | Clostridium baratii |
| 120 | 1506548 | 1506793 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 121 | 2104733 | 2104981 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 122 | 3082079 | 3082309 | - | NZ_CP009933.1 | Clostridium scatologenes |
| 123 | 2204819 | 2205037 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 124 | 1501319 | 1501564 | + | NZ_CP040336.1 | Bacillus luti |
| 125 | 3658378 | 3658623 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 126 | 3727923 | 3728168 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 127 | 3862973 | 3863218 | - | NC_011725.1 | Bacillus cereus B4264 |
| 128 | 3867215 | 3867460 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 129 | 2293333 | 2293551 | - | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 130 | 1200289 | 1200507 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 131 | 854831 | 855076 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 132 | 1162676 | 1162906 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 133 | 1416853 | 1417095 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 134 | 1447493 | 1447711 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 135 | 645036 | 645281 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 136 | 1653022 | 1653240 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 137 | 1449802 | 1450020 | - | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 138 | 1786397 | 1786615 | - | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 139 | 1022865 | 1023083 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 140 | 1073017 | 1073235 | + | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 141 | 1024628 | 1024873 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 142 | 2151016 | 2151261 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 143 | 2045521 | 2045766 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 144 | 1041375 | 1041620 | - | NZ_LS483403.1 | Streptococcus lutetiensis |
| 145 | 1262692 | 1262937 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 146 | 188016 | 188234 | - | NZ_CP023671.1 | Clostridium septicum |
| 147 | 851024 | 851266 | + | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 148 | 1442475 | 1442705 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 149 | 861005 | 861223 | + | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 150 | 1062462 | 1062707 | - | NZ_LS483343.1 | Streptococcus ferus |
| 151 | 846474 | 846719 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 152 | 1414383 | 1414640 | + | NC_008148.1 | Rubrobacter xylanophilus DSM 9941 |
| 153 | 4965660 | 4965905 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 154 | 1872404 | 1872622 | - | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 155 | 2093043 | 2093285 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 156 | 2567570 | 2567815 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 157 | 3753667 | 3753885 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 158 | 1097368 | 1097613 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 159 | 1714573 | 1714818 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 160 | 858564 | 858809 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 161 | 550785 | 551030 | + | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 162 | 4177697 | 4177942 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 163 | 3252571 | 3252819 | - | NC_007517.1 | Geobacter metallireducens GS-15 |
| 164 | 2084364 | 2084597 | + | NC_014758.1 | Calditerrivibrio nitroreducens DSM 19672 |
| 165 | 1406187 | 1406456 | + | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 166 | 1148374 | 1148619 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 167 | 3625484 | 3625714 | + | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 168 | 1389428 | 1389658 | + | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 169 | 3194865 | 3195104 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 170 | 1807274 | 1807504 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 171 | 1270074 | 1270346 | - | NZ_CP046314.1 | Gemella morbillorum |
| 172 | 932232 | 932504 | + | NZ_LR134484.1 | Gemella haemolysans |
| 173 | 124028 | 124273 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 174 | 1575194 | 1575439 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 175 | 3743746 | 3743991 | - | NZ_CP043404.1 | Bacillus safensis |
| 176 | 1779009 | 1779254 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 177 | 911718 | 911963 | + | NZ_CP017237.1 | Moorella thermoacetica |
| 178 | 854220 | 854474 | + | NC_019386.1 | Thermus oshimai JL-2 |
| 179 | 1806039 | 1806284 | - | NZ_LR134293.1 | Streptococcus canis |
| 180 | 1280297 | 1280530 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 181 | 1577708 | 1577953 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 182 | 1472664 | 1472894 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 183 | 4370337 | 4370582 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 184 | 3491606 | 3491851 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 185 | 3840179 | 3840424 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 186 | 2371951 | 2372196 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 187 | 1140678 | 1140923 | + | NZ_LR134379.1 | Slackia heliotrinireducens |
| 188 | 4576542 | 4576814 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 189 | 1206135 | 1206380 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 190 | 3277285 | 3277530 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 191 | 1616085 | 1616324 | - | NZ_AP022873.1 | Dissulfurispira thermophila |
| 192 | 580285 | 580530 | + | NC_013895.2 | Mageeibacillus indolicus UPII9-5 |
| 193 | 1197305 | 1197556 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 194 | 1854272 | 1854529 | - | NZ_CP026328.2 | Acidithiobacillus caldus |
| 195 | 1444643 | 1444888 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 196 | 1905122 | 1905367 | + | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 197 | 1239128 | 1239379 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 198 | 3503427 | 3503699 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 199 | 3267210 | 3267455 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 200 | 257403 | 257654 | - | NC_013939.1 | Deferribacter desulfuricans SSM1 |
| 201 | 34052 | 34288 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 202 | 443624 | 443872 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 203 | 3519490 | 3519726 | - | NC_012108.1 | Desulfobacterium autotrophicum HRM2 |
| 204 | 3737518 | 3737763 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 205 | 1425270 | 1425515 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 206 | 1801619 | 1801864 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 207 | 1800980 | 1801225 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 208 | 1810135 | 1810380 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 209 | 897396 | 897650 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 210 | 1607271 | 1607495 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 211 | 1915761 | 1915991 | - | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 212 | 4652719 | 4652964 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 213 | 1928728 | 1928979 | + | NZ_CP023392.1 | Lactococcus raffinolactis |
| 214 | 2211647 | 2211865 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 215 | 2905812 | 2906027 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 216 | 1566503 | 1566748 | - | NZ_CP022680.1 | Streptococcus respiraculi |
| 217 | 1055267 | 1055497 | + | NZ_LT906477.1 | Clostridium cochlearium |
| 218 | 1027733 | 1027978 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 219 | 2332271 | 2332516 | - | NZ_CP011937.1 | Bacillus velezensis |
| 220 | 1628630 | 1628875 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 221 | 1120970 | 1121188 | + | NZ_CP034791.1 | Caldicellulosiruptor changbaiensis |
| 222 | 4956928 | 4957173 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 223 | 1580998 | 1581243 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 224 | 1908539 | 1908784 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 225 | 4323021 | 4323275 | - | NZ_AP019400.1 | Cohnella abietis |
| 226 | 1101243 | 1101488 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 227 | 2078356 | 2078601 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 228 | 1794622 | 1794867 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 229 | 1276054 | 1276296 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 230 | 1646403 | 1646648 | + | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 231 | 1438092 | 1438325 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 232 | 1514640 | 1514885 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 233 | 3585904 | 3586176 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 234 | 1285544 | 1285792 | - | NC_012526.1 | Deinococcus deserti VCD115 |
| 235 | 1639759 | 1640025 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 236 | 1150607 | 1150852 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 237 | 1012702 | 1012947 | - | NZ_CP032621.1 | Streptococcus gwangjuense |
| 238 | 750916 | 751161 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 239 | 2289836 | 2290054 | + | NC_014393.1 | Clostridium cellulovorans 743B |
| 240 | 2595525 | 2595785 | - | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 241 | 2671239 | 2671511 | - | NZ_LS483476.1 | Lederbergia lentus |
| 242 | 799253 | 799498 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 243 | 2526675 | 2526890 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 244 | 1789139 | 1789384 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 245 | 2540574 | 2540819 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 246 | 749763 | 750008 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 247 | 769012 | 769257 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 248 | 762793 | 763038 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 249 | 2747011 | 2747250 | - | NC_014972.1 | Desulfobulbus propionicus DSM 2032 |
| 250 | 2210033 | 2210278 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 251 | 2599668 | 2599913 | + | NZ_CP026363.1 | Brevibacillus agri |
| 252 | 2218014 | 2218250 | - | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 253 | 1573868 | 1574086 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 254 | 731811 | 732053 | + | NZ_CP009302.1 | Berryella intestinalis |
| 255 | 4402178 | 4402444 | - | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 256 | 1050387 | 1050632 | + | NZ_LR134483.1 | Listeria grayi |
| 257 | 2813820 | 2814092 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 258 | 3268535 | 3268780 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 259 | 58499 | 58741 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 260 | 2128840 | 2129058 | - | NZ_LR699011.1 | Roseburia hominis |
| 261 | 3088140 | 3088373 | - | NZ_CP054140.1 | Desulfobulbus oligotrophicus |
| 262 | 3449100 | 3449345 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 263 | 6386183 | 6386428 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 264 | 1343838 | 1344083 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 265 | 2686907 | 2687173 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 266 | 4236565 | 4236810 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 267 | 6308927 | 6309172 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 268 | 4767622 | 4767867 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 269 | 1740094 | 1740342 | + | NZ_CP011387.1 | Deinococcus puniceus |
| 270 | 3741567 | 3741806 | + | NC_013173.1 | Desulfomicrobium baculatum DSM 4028 |
| 271 | 1607940 | 1608173 | + | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 272 | 854316 | 854579 | - | NZ_LT996885.1 | Dialister massiliensis |
| 273 | 1467169 | 1467414 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 274 | 406575 | 406823 | - | NZ_CP010028.1 | Deinococcus radiopugnans |
| 275 | 5464991 | 5465236 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 276 | 2388284 | 2388529 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 277 | 3160376 | 3160579 | + | NC_006138.1 | Desulfotalea psychrophila LSv54 |
| 278 | 6150367 | 6150612 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 279 | 1240738 | 1240986 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 280 | 1068930 | 1069175 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 281 | 1425518 | 1425757 | + | NZ_CP014230.1 | Desulfomicrobium orale DSM 12838 |
| 282 | 6105373 | 6105618 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 283 | 4068091 | 4068336 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 284 | 1988019 | 1988273 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 285 | 767016 | 767288 | + | NZ_AP019551.1 | Athalassotoga saccharophila |
| 286 | 3988884 | 3989129 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 287 | 3861799 | 3862065 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 288 | 3943249 | 3943515 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 289 | 1056862 | 1057107 | + | NZ_CP033433.1 | Cohnella candidum |
| 290 | 3786287 | 3786532 | - | NZ_CP009288.1 | Paenibacillus durus |
| 291 | 774850 | 775065 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 292 | 6169064 | 6169309 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 293 | 565975 | 566187 | - | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 294 | 1011486 | 1011761 | + | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 295 | 1402034 | 1402276 | + | NZ_CP031115.1 | Rubrobacter indicoceani |
| 296 | 2641179 | 2641424 | - | NC_022097.1 | Treponema pedis str. T A4 |
| 297 | 1604715 | 1604963 | - | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 298 | 1385412 | 1385645 | - | NC_014216.1 | Desulfurivibrio alkaliphilus AHT 2 |
| 299 | 305355 | 305615 | + | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 300 | 3683369 | 3683581 | - | NZ_CP071376.1 | Clostridium gasigenes |
| 301 | 1669968 | 1670213 | - | NC_022567.1 | Adlercreutzia equolifaciens DSM 19450 |
| 302 | 1539602 | 1539838 | - | NC_017094.1 | Leptospirillum ferrooxidans C2-3 |
| 303 | 541258 | 541533 | + | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 304 | 44311 | 44553 | + | NC_013170.1 | Cryptobacterium curtum DSM 15641 |
| 305 | 3274943 | 3275167 | - | NC_012483.1 | Acidobacterium capsulatum ATCC 51196 |
| 306 | 1569646 | 1569894 | + | NC_008025.1 | Deinococcus geothermalis DSM 11300 |
| 307 | 1432778 | 1433023 | - | NZ_CP009228.1 | Treponema putidum |
| 308 | 901307 | 901552 | + | NC_002967.9 | Treponema denticola ATCC 35405 |
| 309 | 1253411 | 1253653 | + | NZ_LR215050.1 | Acholeplasma hippikon |
| 310 | 1228318 | 1228560 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 311 | 2031922 | 2032176 | + | NC_014364.1 | Sediminispirochaeta smaragdinae DSM 11293 |
| 312 | 2262481 | 2262738 | + | NZ_CP011129.1 | Lysobacter antibioticus |
| 313 | 3590216 | 3590473 | - | NZ_CP011131.1 | Lysobacter gummosus |
| 314 | 506700 | 506933 | + | NC_014970.1 | Mycoplasma haemofelis str. Langford 1 |
| 315 | 764227 | 764478 | - | NZ_CP027860.1 | Ahniella affigens |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048104.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01782.20 | 0.9 | 285 | 369 | same-strand | RimM N-terminal domain |
| 2 | PF05239.18 | 0.85 | 268 | 371.5 | same-strand | PRC-barrel domain |
| 3 | PF13083.8 | 0.93 | 293 | 22 | same-strand | KH domain |
| 4 | PF04297.16 | 0.63 | 200 | 1487.0 | same-strand | Putative helix-turn-helix protein, YlxM / p13 like |
| 5 | PF00448.24 | 0.79 | 248 | 140.0 | same-strand | SRP54-type protein, GTPase domain |
| 6 | PF02978.21 | 0.79 | 248 | 93.0 | same-strand | Signal peptide binding domain |
| 7 | PF02881.21 | 0.79 | 248 | 140.0 | same-strand | SRP54-type protein, helical bundle domain |
| 8 | PF01746.23 | 0.87 | 275 | 884 | same-strand | tRNA (Guanine-1)-methyltransferase |
| 9 | PF01245.22 | 0.66 | 207 | 1834 | same-strand | Ribosomal protein L19 |
++ More..