Result : Q3M6U8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Photosystem II protein Y |
| NCBI Accession ID | CP000117.1 |
| Organism | Trichormus variabilis (strain ATCC 29413 / PCC 7937) (Anabaena variabilis) |
| Left | 4589552 |
| Right | 4589677 |
| Strand | + |
| Nucleotide Sequence | ATGGATATTGATTTTCGTGTAGCGATCGTTTTAGCGCCAATTGCCGTTGCTGCTGGCTGGGCTGCTTTTAATATTGGTGCTGCTGCTATCAGACAAGTTCAAAACTTTTTGAACAGAGAAGCTTAA |
| Sequence | MDIDFRVAIVLAPIAVAAGWAAFNIGAAAIRQVQNFLNREA |
| Source of smORF | Swiss-Prot |
| Function | Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II. {ECO:0000255|HAMAP-Rule:MF_00717}. |
| Pubmed ID | 25197444 |
| Domain | CDD:421422 |
| Functional Category | Others |
| Uniprot ID | Q3M6U8 |
| ORF Length (Amino Acid) | 41 |
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| Conservation Analysis |
No. of Species: 22
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5902107 | 5902232 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 2 | 328800 | 328925 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 3 | 2357303 | 2357428 | - | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 4 | 5803049 | 5803174 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 5 | 473466 | 473591 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 6 | 8289703 | 8289828 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 7 | 6197922 | 6198047 | + | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 8 | 6518863 | 6518991 | - | NC_019751.1 | Calothrix sp. PCC 6303 |
| 9 | 2454007 | 2454132 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 10 | 701309 | 701434 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 11 | 950932 | 951054 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 12 | 2610605 | 2610730 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 13 | 2995960 | 2996085 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 14 | 5045337 | 5045462 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 15 | 2741160 | 2741267 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 16 | 2940696 | 2940818 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 17 | 6463600 | 6463725 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 18 | 4688354 | 4688473 | - | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 19 | 3144530 | 3144640 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 20 | 893688 | 893810 | + | NC_019675.1 | Cyanobium gracile PCC 6307 |
| 21 | 1271877 | 1271996 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 22 | 3826929 | 3827045 | + | NC_009925.1 | Acaryochloris marina MBIC11017 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP047242.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09654.12 | 0.73 | 16 | 961.5 | opposite-strand | Protein of unknown function (DUF2396) |
| 2 | PF00132.26 | 0.82 | 18 | 192.0 | same-strand | Bacterial transferase hexapeptide (six repeats) |
| 3 | PF14602.8 | 0.82 | 18 | 192.0 | same-strand | Hexapeptide repeat of succinyl-transferase |
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