* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034328.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00891.20
|
1.0
|
2
|
5121.0
|
same-strand
|
O-methyltransferase domain
|
2
|
PF13489.8
|
1.0
|
2
|
5121.0
|
same-strand
|
Methyltransferase domain
|
3
|
PF13649.8
|
1.0
|
2
|
5121.0
|
same-strand
|
Methyltransferase domain
|
4
|
PF00142.20
|
1.0
|
2
|
3051.0
|
same-strand
|
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
|
5
|
PF01656.25
|
1.0
|
2
|
3051.0
|
same-strand
|
CobQ/CobB/MinD/ParA nucleotide binding domain
|
6
|
PF00148.21
|
1.0
|
2
|
738.0
|
same-strand
|
Nitrogenase component 1 type Oxidoreductase
|
7
|
PF08369.12
|
1.0
|
2
|
-0.5
|
same-strand
|
Proto-chlorophyllide reductase 57 kD subunit
|
8
|
PF00556.22
|
1.0
|
2
|
272.0
|
same-strand
|
Antenna complex alpha/beta subunit
|
9
|
PF00124.21
|
1.0
|
2
|
1085.5
|
same-strand
|
Photosynthetic reaction centre protein
|
10
|
PF11511.10
|
1.0
|
2
|
2441.0
|
same-strand
|
Intrinsic membrane protein PufX
|
++ More..