Result : Q3IJ79
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0250 protein PSHAa1021 |
| NCBI Accession ID | CR954246.1 |
| Organism | Pseudoalteromonas translucida (strain TAC 125) |
| Left | 1057482 |
| Right | 1057760 |
| Strand | - |
| Nucleotide Sequence | GTGGTTCAACCAGTTAAAGATACTAAATTTGATGAGTATTTAGAGTTCCCTTGCCCGTTTACATTTAAAATAATGGGTTTAGCCAATGTAAACTTAACGGATCAAATTTTAGCTAAGTTACAAGTTATTGCACCTGGCGACTATGCCCCAAAAGTAAAACCAAGTAGCAAAGGTAATTACGAATCAGTTTCGCTTGTTGCAACCGTTACTAGTGGCGCTCATATTGAAGAAATTTATAACGTGATCAGTAATCTAGATGACGTACGCCACATGCTTTAA |
| Sequence | MVQPVKDTKFDEYLEFPCPFTFKIMGLANVNLTDQILAKLQVIAPGDYAPKVKPSSKGNYESVSLVATVTSGAHIEEIYNVISNLDDVRHML |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01102. Profile Description: Protein of unknown function (DUF493). hypothetical protein; Provisional |
| Pubmed ID | 16169927 |
| Domain | CDD:412741 |
| Functional Category | Others |
| Uniprot ID | Q3IJ79 |
| ORF Length (Amino Acid) | 92 |
++ More..
| Conservation Analysis |
No. of Species: 162
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1057482 | 1057760 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 2 | 1124861 | 1125139 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 3 | 4360184 | 4360462 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 4 | 2211739 | 2212017 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 5 | 2187076 | 2187354 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 6 | 2647300 | 2647578 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 7 | 1269857 | 1270135 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 8 | 1164204 | 1164482 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 9 | 1188276 | 1188554 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 10 | 2466269 | 2466547 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 11 | 2324683 | 2324961 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 12 | 3057602 | 3057880 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 13 | 4226241 | 4226519 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 14 | 1932912 | 1933190 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 15 | 1175690 | 1175968 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 16 | 633541 | 633819 | - | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 17 | 850126 | 850404 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 18 | 1012692 | 1012958 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
| 19 | 1390741 | 1391016 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 20 | 3726553 | 3726822 | + | NC_008709.1 | Psychromonas ingrahamii 37 |
| 21 | 1507100 | 1507372 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 22 | 1758914 | 1759177 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 23 | 2637776 | 2638039 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 24 | 2317106 | 2317369 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 25 | 2745526 | 2745801 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 26 | 2874493 | 2874756 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 27 | 2241314 | 2241577 | + | NZ_CP067057.1 | Rahnella aceris |
| 28 | 2933530 | 2933772 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 29 | 1125017 | 1125280 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 30 | 2791045 | 2791308 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 31 | 2260301 | 2260564 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 32 | 3265556 | 3265798 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 33 | 3357763 | 3358026 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 34 | 2500937 | 2501200 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 35 | 3113803 | 3114045 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 36 | 3614013 | 3614252 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 37 | 12058 | 12321 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 38 | 3457693 | 3457959 | - | NZ_CP011254.1 | Serratia fonticola |
| 39 | 1280113 | 1280376 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 40 | 4754679 | 4754945 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 41 | 1157226 | 1157489 | - | NZ_AP022188.1 | Aeromonas media |
| 42 | 1237093 | 1237356 | - | NZ_LR134494.1 | Serratia quinivorans |
| 43 | 3811852 | 3812115 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 44 | 1291151 | 1291414 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 45 | 1283523 | 1283786 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 46 | 1239709 | 1239972 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 47 | 1272043 | 1272306 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 48 | 1310749 | 1311012 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 49 | 469556 | 469819 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 50 | 1486484 | 1486747 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 51 | 3714178 | 3714441 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 52 | 4026486 | 4026725 | + | NC_016901.1 | Shewanella baltica OS678 |
| 53 | 2619386 | 2619649 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 54 | 3821998 | 3822264 | + | NZ_CP071320.1 | Serratia ureilytica |
| 55 | 542408 | 542674 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 56 | 1236711 | 1236977 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 57 | 3384788 | 3385051 | + | NZ_CP048796.1 | Providencia vermicola |
| 58 | 921440 | 921703 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 59 | 2835204 | 2835467 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 60 | 715224 | 715487 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 61 | 545087 | 545350 | - | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 62 | 1096947 | 1097210 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 63 | 3012718 | 3012981 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 64 | 1181384 | 1181647 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 65 | 553236 | 553499 | - | NZ_CP028271.1 | Mixta intestinalis |
| 66 | 2907612 | 2907854 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 67 | 4089105 | 4089368 | + | NZ_CP028897.1 | Dongshaea marina |
| 68 | 4179283 | 4179546 | - | NZ_CP009787.1 | Yersinia rohdei |
| 69 | 3859873 | 3860112 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 70 | 3337523 | 3337786 | + | NZ_CP043727.1 | Yersinia canariae |
| 71 | 3728248 | 3728511 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 72 | 2730657 | 2730920 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 73 | 1160808 | 1161071 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 74 | 1251512 | 1251754 | - | NZ_CP015581.1 | Tatumella citrea |
| 75 | 3056357 | 3056620 | + | NZ_LT615367.1 | Dickeya aquatica |
| 76 | 405762 | 406025 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 77 | 1501828 | 1502091 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 78 | 1277638 | 1277901 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 79 | 1391391 | 1391654 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 80 | 3517599 | 3517862 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 81 | 1981340 | 1981603 | + | NZ_CP038469.1 | Citrobacter tructae |
| 82 | 925654 | 925917 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 83 | 4191671 | 4191934 | - | NZ_CP033744.1 | Citrobacter freundii |
| 84 | 894225 | 894488 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 85 | 1244813 | 1245076 | - | NC_015968.1 | Enterobacter soli |
| 86 | 2230608 | 2230871 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 87 | 2975930 | 2976193 | - | NZ_CP007230.1 | Yersinia similis |
| 88 | 3240175 | 3240438 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 89 | 2664823 | 2665086 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 90 | 4141217 | 4141456 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 91 | 1088140 | 1088385 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 92 | 3270955 | 3271218 | - | NZ_CP026047.1 | Raoultella planticola |
| 93 | 3948614 | 3948877 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 94 | 2742706 | 2742969 | + | NZ_CP032487.1 | Yersinia hibernica |
| 95 | 1389260 | 1389523 | - | NZ_CP026377.1 | Mixta gaviniae |
| 96 | 4198399 | 4198662 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 97 | 3798335 | 3798598 | + | NZ_CP041247.1 | Raoultella electrica |
| 98 | 3172115 | 3172378 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 99 | 305717 | 305980 | + | NZ_CP019706.1 | Pantoea alhagi |
| 100 | 397124 | 397387 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 101 | 8578 | 8841 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 102 | 3718353 | 3718616 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 103 | 1561372 | 1561635 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 104 | 3974527 | 3974790 | + | NZ_CP054254.1 | Klebsiella variicola |
| 105 | 3223049 | 3223312 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 106 | 3187336 | 3187599 | - | NZ_CP053416.1 | Salmonella bongori |
| 107 | 2333977 | 2334240 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 108 | 710219 | 710482 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 109 | 1178382 | 1178645 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 110 | 1891773 | 1892036 | - | NZ_CP029736.1 | Providencia rettgeri |
| 111 | 1264715 | 1264978 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 112 | 1411811 | 1412074 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 113 | 698032 | 698295 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 114 | 2545043 | 2545306 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 115 | 4089216 | 4089479 | + | NZ_CP050508.1 | Raoultella terrigena |
| 116 | 1258807 | 1259070 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 117 | 462430 | 462693 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 118 | 198222 | 198485 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 119 | 658656 | 658919 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 120 | 489467 | 489730 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 121 | 1288997 | 1289260 | - | NZ_CP061511.1 | Mixta calida |
| 122 | 2613175 | 2613438 | - | NZ_CP026364.1 | Proteus hauseri |
| 123 | 4359114 | 4359377 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 124 | 3756390 | 3756653 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 125 | 1024316 | 1024579 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 126 | 2080582 | 2080845 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 127 | 1932888 | 1933151 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 128 | 2375913 | 2376176 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 129 | 2509058 | 2509309 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 130 | 3079065 | 3079328 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 131 | 1301235 | 1301498 | - | NZ_LR134340.1 | Escherichia marmotae |
| 132 | 1522983 | 1523246 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 133 | 687879 | 688142 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 134 | 662379 | 662642 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 135 | 634675 | 634938 | - | NZ_AP014857.1 | Escherichia albertii |
| 136 | 743737 | 744000 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 137 | 4014948 | 4015211 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 138 | 3145000 | 3145263 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 139 | 3381193 | 3381456 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 140 | 1318266 | 1318529 | - | NZ_CP025799.1 | Dickeya zeae |
| 141 | 3381182 | 3381424 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 142 | 1908035 | 1908298 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 143 | 3312681 | 3312944 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 144 | 677106 | 677369 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 145 | 1452358 | 1452621 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 146 | 211656 | 211919 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 147 | 3424730 | 3424993 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 148 | 3606659 | 3606922 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 149 | 251785 | 252048 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 150 | 1246501 | 1246743 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 151 | 2780524 | 2780787 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 152 | 1502981 | 1503244 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 153 | 1601400 | 1601663 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 154 | 3822146 | 3822409 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 155 | 1386125 | 1386388 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 156 | 1311506 | 1311769 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 157 | 2156804 | 2157067 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 158 | 3056006 | 3056269 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 159 | 4293612 | 4293875 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 160 | 2323345 | 2323587 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 161 | 2015618 | 2015881 | - | NZ_CP008849.1 | Alteromonas australica |
| 162 | 1514446 | 1514709 | + | NZ_CP014322.1 | Alteromonas addita |
| 163 | 2144903 | 2145166 | + | NC_015554.1 | Alteromonas naphthalenivorans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007481.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 0.99 | 161 | 966.0 | same-strand | Radical SAM superfamily |
| 2 | PF03099.21 | 0.65 | 106 | 95 | same-strand | Biotin/lipoate A/B protein ligase family |
| 3 | PF00768.22 | 0.99 | 160 | 113 | same-strand | D-alanyl-D-alanine carboxypeptidase |
| 4 | PF07943.15 | 0.99 | 160 | 113 | same-strand | Penicillin-binding protein 5, C-terminal domain |
| 5 | PF03330.20 | 0.98 | 158 | 1465.5 | same-strand | Lytic transglycolase |
| 6 | PF05036.15 | 0.96 | 156 | 1465 | same-strand | SPOR domain |
| 7 | PF01098.21 | 0.98 | 158 | 2587 | same-strand | Cell cycle protein |
| 8 | PF00905.24 | 0.96 | 155 | 3703.0 | same-strand | Penicillin binding protein transpeptidase domain |
| 9 | PF03717.17 | 0.96 | 155 | 3703.0 | same-strand | Penicillin-binding Protein dimerisation domain |
| 10 | PF02590.19 | 0.88 | 142 | 5631 | same-strand | Predicted SPOUT methyltransferase |
++ More..