Result : Q3IID3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA gyrase inhibitor YacG |
| NCBI Accession ID | CR954246.1 |
| Organism | Pseudoalteromonas translucida (strain TAC 125) |
| Left | 392989 |
| Right | 393219 |
| Strand | - |
| Nucleotide Sequence | ATGCCAACTATTGTTAACTGCCCAACCTGTAAAAGTAAGGTTGAATGGTCAGAGCAAAGCCCACACCGCCCGTTTTGTTCAAAACGTTGTCAGCTTATTGATTTAGGCGAATGGTCGTTTGAAAATAACAGAATTTCAGCCCCTATAACCTCAGCTGAAGATTTTAGCCAAGACATGATTGAAGACATAGAAGCCATGATGGCAAAAAATGAAGATGACTTTTTTAAGTAA |
| Sequence | MPTIVNCPTCKSKVEWSEQSPHRPFCSKRCQLIDLGEWSFENNRISAPITSAEDFSQDMIEDIEAMMAKNEDDFFK |
| Source of smORF | Swiss-Prot |
| Function | Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. {ECO:0000255|HAMAP-Rule:MF_00649}. |
| Pubmed ID | 16169927 |
| Domain | CDD:412768 |
| Functional Category | Metal-binding |
| Uniprot ID | Q3IID3 |
| ORF Length (Amino Acid) | 76 |
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| Conservation Analysis |
No. of Species: 42
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 392989 | 393219 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 2 | 459996 | 460226 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 3 | 3187967 | 3188197 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 4 | 3426787 | 3427017 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 5 | 2359680 | 2359910 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 6 | 2961293 | 2961523 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 7 | 3277191 | 3277421 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 8 | 2979862 | 2980092 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 9 | 3059391 | 3059624 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 10 | 3137378 | 3137608 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 11 | 3216478 | 3216708 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 12 | 712876 | 713118 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 13 | 654603 | 654842 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 14 | 1341625 | 1341867 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 15 | 2290384 | 2290617 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 16 | 3013860 | 3014093 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 17 | 36128 | 36367 | - | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 18 | 530447 | 530674 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 19 | 2607388 | 2607615 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 20 | 2967796 | 2968035 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 21 | 629595 | 629831 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 22 | 1117234 | 1117431 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 23 | 3549656 | 3549883 | + | NZ_CP014322.1 | Alteromonas addita |
| 24 | 3324130 | 3324357 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 25 | 3191289 | 3191525 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 26 | 3183517 | 3183711 | + | NZ_CP008849.1 | Alteromonas australica |
| 27 | 820983 | 821177 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 28 | 3141660 | 3141881 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 29 | 871200 | 871430 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 30 | 634725 | 634937 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 31 | 3957287 | 3957481 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 32 | 2552286 | 2552474 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 33 | 261272 | 261481 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 34 | 1377255 | 1377461 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 35 | 999506 | 999727 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 36 | 727273 | 727467 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 37 | 4152240 | 4152434 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 38 | 706927 | 707121 | - | NZ_CP013481.2 | Pandoraea apista |
| 39 | 1424697 | 1424891 | - | NZ_CP047385.1 | Pandoraea fibrosis |
| 40 | 3142389 | 3142583 | - | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 41 | 5203838 | 5204032 | + | NZ_CP010310.2 | Pandoraea pulmonicola |
| 42 | 4756372 | 4756566 | + | NC_023018.2 | Pandoraea pnomenusa |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007481.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00437.22 | 0.74 | 31 | 1587.0 | same-strand | Type II/IV secretion system protein |
| 2 | PF01121.22 | 1.0 | 42 | 1012.0 | same-strand | Dephospho-CoA kinase |
| 3 | PF06750.15 | 0.79 | 33 | 2490 | same-strand | Bacterial Peptidase A24 N-terminal domain |
| 4 | PF01478.20 | 0.9 | 38 | 2005.0 | same-strand | Type IV leader peptidase family |
| 5 | PF00482.25 | 0.98 | 41 | 2915 | same-strand | Type II secretion system (T2SS), protein F |
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