Result : Q3ICF9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | YcgL domain-containing protein PSHAb0508 |
| NCBI Accession ID | CR954247.1 |
| Organism | Pseudoalteromonas translucida (strain TAC 125) |
| Left | 573526 |
| Right | 573807 |
| Strand | + |
| Nucleotide Sequence | ATGCTCACTGCGGTATATAAAAGTAAGAAAAAAGCGGATAGCTTCTTATTTGTTGAAAAAAGAGATGATTTTACTAAAGTTCCGGAACCTTTAATGGCTATGTTTGGTCAACCTAAATATGTGATGCTGATAAACCTAGCAAAACGTGCGATGTTAGGCACAGCTGATTTAGAAACCGTAAAAGCAGCATTGACAGAAAAAGGGTATTATTTACAAATACCGCCTCCGCAGGAGAATCTGTTAAGCCAATTACGAAAAGAAAACGGAGCCGATAATGATTAA |
| Sequence | MLTAVYKSKKKADSFLFVEKRDDFTKVPEPLMAMFGQPKYVMLINLAKRAMLGTADLETVKAALTEKGYYLQIPPPQENLLSQLRKENGADND |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22628. Profile Description: YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure. |
| Pubmed ID | 16169927 |
| Domain | CDD:419850 |
| Functional Category | Others |
| Uniprot ID | Q3ICF9 |
| ORF Length (Amino Acid) | 93 |
++ More..
| Conservation Analysis |
No. of Species: 182
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 573526 | 573807 | + | NC_007482.1 | Pseudoalteromonas translucida |
| 2 | 616823 | 617104 | + | NZ_CP011037.1 | Pseudoalteromonas nigrifaciens |
| 3 | 67331 | 67618 | - | NZ_CP027524.1 | Pseudoalteromonas carrageenovora |
| 4 | 661767 | 662048 | + | NZ_CP011031.1 | Pseudoalteromonas issachenkonii |
| 5 | 662047 | 662328 | + | NZ_CP011042.1 | Pseudoalteromonas tetraodonis |
| 6 | 574278 | 574565 | + | NZ_CP033066.1 | Pseudoalteromonas agarivorans |
| 7 | 304086 | 304367 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 8 | 720040 | 720321 | + | NZ_CP011026.1 | Pseudoalteromonas arctica A 37-1-2 |
| 9 | 716164 | 716451 | + | NZ_CP011029.1 | Pseudoalteromonas espejiana DSM 9414 |
| 10 | 784421 | 784699 | + | NZ_CP011040.1 | Pseudoalteromonas spongiae UST010723-006 |
| 11 | 194763 | 195044 | + | NZ_CP032091.1 | Pseudoalteromonas donghaensis |
| 12 | 880604 | 880882 | - | NZ_CP009889.1 | Pseudoalteromonas piratica |
| 13 | 585485 | 585766 | + | NZ_CP072135.1 | Pseudoalteromonas xiamenensis |
| 14 | 984560 | 984841 | + | NZ_CP013188.1 | Pseudoalteromonas phenolica |
| 15 | 766373 | 766654 | + | NZ_CP031962.1 | Pseudoalteromonas tunicata |
| 16 | 392499 | 392780 | - | NZ_CP072426.1 | Pseudoalteromonas viridis |
| 17 | 3267057 | 3267344 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 18 | 3029194 | 3029472 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 19 | 1862497 | 1862775 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 20 | 2453458 | 2453739 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 21 | 2543261 | 2543542 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 22 | 716039 | 716320 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 23 | 1902782 | 1903063 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 24 | 2987344 | 2987625 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 25 | 48829 | 49110 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 26 | 1033321 | 1033599 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 27 | 2194045 | 2194326 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 28 | 2279841 | 2280119 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 29 | 1615220 | 1615510 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 30 | 1950485 | 1950763 | + | NZ_CP041036.1 | Shewanella polaris |
| 31 | 2045207 | 2045485 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 32 | 2357226 | 2357504 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 33 | 2590237 | 2590518 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 34 | 2390125 | 2390406 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 35 | 1893714 | 1894001 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 36 | 2288391 | 2288678 | + | NZ_CP046378.1 | Shewanella algae |
| 37 | 3063206 | 3063487 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 38 | 2272076 | 2272354 | + | NC_016901.1 | Shewanella baltica OS678 |
| 39 | 2829129 | 2829410 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 40 | 2714234 | 2714512 | - | NZ_CP020472.1 | Shewanella japonica |
| 41 | 2070481 | 2070759 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 42 | 1923025 | 1923306 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 43 | 1416112 | 1416393 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 44 | 3655970 | 3656263 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 45 | 2729075 | 2729353 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 46 | 1906767 | 1907042 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 47 | 745280 | 745558 | + | NZ_CP044060.1 | Aeromonas veronii |
| 48 | 4453144 | 4453467 | + | NZ_CP036200.1 | Shewanella maritima |
| 49 | 2221173 | 2221445 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 50 | 2465577 | 2465867 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 51 | 2522856 | 2523128 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 52 | 3204725 | 3204994 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 53 | 914424 | 914702 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 54 | 2037235 | 2037519 | + | NZ_CP050150.1 | Hafnia alvei |
| 55 | 2655628 | 2655903 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 56 | 2499704 | 2499976 | - | NZ_CP043727.1 | Yersinia canariae |
| 57 | 2957840 | 2958115 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 58 | 4647732 | 4648004 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 59 | 248496 | 248774 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 60 | 1766184 | 1766474 | - | NZ_CP033078.1 | Vibrio zhugei |
| 61 | 2389418 | 2389699 | - | NZ_AP014635.1 | Vibrio tritonius |
| 62 | 2130133 | 2130411 | + | NZ_CP050508.1 | Raoultella terrigena |
| 63 | 716711 | 716986 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 64 | 1824447 | 1824722 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 65 | 2774665 | 2774937 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 66 | 2189954 | 2190232 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 67 | 2828551 | 2828826 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 68 | 579263 | 579538 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 69 | 4022626 | 4022898 | + | NZ_CP007230.1 | Yersinia similis |
| 70 | 285985 | 286260 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 71 | 2139970 | 2140242 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 72 | 2703782 | 2704051 | + | NZ_CP029736.1 | Providencia rettgeri |
| 73 | 3312071 | 3312352 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 74 | 2249344 | 2249619 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 75 | 2462323 | 2462619 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 76 | 1851508 | 1851789 | + | NZ_LR134531.1 | Pragia fontium |
| 77 | 2526903 | 2527178 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 78 | 1982382 | 1982663 | + | NZ_CP054254.1 | Klebsiella variicola |
| 79 | 3563313 | 3563588 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 80 | 2283211 | 2283489 | + | NZ_AP022188.1 | Aeromonas media |
| 81 | 1944934 | 1945203 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 82 | 1905067 | 1905348 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 83 | 4219680 | 4219970 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 84 | 2704388 | 2704663 | - | NC_015968.1 | Enterobacter soli |
| 85 | 2514805 | 2515074 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 86 | 2036940 | 2037221 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 87 | 5178406 | 5178687 | - | NZ_CP026047.1 | Raoultella planticola |
| 88 | 2089605 | 2089886 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 89 | 3728056 | 3728325 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 90 | 1217572 | 1217865 | + | NZ_AP014857.1 | Escherichia albertii |
| 91 | 2772935 | 2773210 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 92 | 1340068 | 1340361 | - | NZ_CP038469.1 | Citrobacter tructae |
| 93 | 479096 | 479368 | + | NZ_CP009787.1 | Yersinia rohdei |
| 94 | 2028740 | 2029012 | - | NZ_CP032487.1 | Yersinia hibernica |
| 95 | 3489532 | 3489813 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 96 | 3034178 | 3034450 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 97 | 2773972 | 2774247 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 98 | 4516800 | 4517075 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 99 | 2175683 | 2175955 | + | NZ_CP071320.1 | Serratia ureilytica |
| 100 | 3025733 | 3026005 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 101 | 2923845 | 2924117 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 102 | 1957351 | 1957644 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 103 | 4552177 | 4552470 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 104 | 2099168 | 2099440 | + | NZ_CP046293.1 | Yersinia intermedia |
| 105 | 147153 | 147428 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 106 | 1743351 | 1743629 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 107 | 2482741 | 2483016 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 108 | 2018769 | 2019050 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 109 | 608423 | 608695 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 110 | 1500041 | 1500319 | + | NZ_CP040990.1 | Vibrio furnissii |
| 111 | 2952124 | 2952396 | - | NZ_LT906479.1 | Serratia ficaria |
| 112 | 1369171 | 1369440 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 113 | 1993598 | 1993873 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 114 | 2862178 | 2862453 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 115 | 2427603 | 2427881 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 116 | 1227714 | 1228007 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 117 | 1669338 | 1669631 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 118 | 2147134 | 2147412 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 119 | 2234980 | 2235252 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 120 | 2985611 | 2985886 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 121 | 1211416 | 1211709 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 122 | 2447927 | 2448199 | - | NZ_CP048796.1 | Providencia vermicola |
| 123 | 1658421 | 1658696 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 124 | 4231107 | 4231376 | - | NZ_CP065640.1 | Serratia rubidaea |
| 125 | 1508358 | 1508630 | - | NZ_CP067057.1 | Rahnella aceris |
| 126 | 3029835 | 3030107 | - | NZ_LR134494.1 | Serratia quinivorans |
| 127 | 1521106 | 1521381 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 128 | 815073 | 815366 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 129 | 2752038 | 2752313 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 130 | 2003076 | 2003345 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 131 | 1422667 | 1422945 | + | NZ_CP040449.1 | Aeromonas simiae |
| 132 | 3444926 | 3445198 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 133 | 1494823 | 1495098 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 134 | 66866 | 67138 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 135 | 1962364 | 1962642 | + | NZ_CP037951.1 | Parashewanella tropica |
| 136 | 2804037 | 2804336 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 137 | 535141 | 535434 | - | NZ_CP033744.1 | Citrobacter freundii |
| 138 | 1143728 | 1144021 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 139 | 3154477 | 3154749 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 140 | 255880 | 256158 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 141 | 926767 | 927042 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 142 | 1911662 | 1911955 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 143 | 1127321 | 1127599 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 144 | 5078875 | 5079147 | - | NZ_CP011254.1 | Serratia fonticola |
| 145 | 1988904 | 1989179 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 146 | 2564879 | 2565154 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 147 | 1916956 | 1917228 | - | NZ_CP065534.1 | Lonsdalea populi |
| 148 | 1584968 | 1585249 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 149 | 1903503 | 1903796 | + | NZ_LR134340.1 | Escherichia marmotae |
| 150 | 4422546 | 4422839 | - | NZ_CP053416.1 | Salmonella bongori |
| 151 | 1636899 | 1637177 | - | NZ_CP035688.1 | Vibrio metoecus |
| 152 | 2350063 | 2350320 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 153 | 2135634 | 2135909 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 154 | 4072265 | 4072522 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 155 | 1925281 | 1925562 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 156 | 672337 | 672612 | - | NZ_CP049115.1 | Pantoea stewartii |
| 157 | 1966017 | 1966295 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 158 | 1092330 | 1092587 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 159 | 1680422 | 1680679 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 160 | 2385590 | 2385883 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 161 | 696745 | 697035 | + | NZ_CP016604.1 | Otariodibacter oris |
| 162 | 1991152 | 1991409 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 163 | 2437328 | 2437585 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 164 | 2783494 | 2783784 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 165 | 2599694 | 2599951 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 166 | 4233522 | 4233797 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 167 | 2506056 | 2506313 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 168 | 2282883 | 2283140 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 169 | 3874715 | 3874972 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 170 | 2402399 | 2402656 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 171 | 1862121 | 1862378 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 172 | 1504440 | 1504691 | + | NZ_CP061280.1 | Mannheimia bovis |
| 173 | 923500 | 923790 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 174 | 2755542 | 2755808 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 175 | 1850217 | 1850492 | + | NZ_LR134201.1 | Cedecea lapagei |
| 176 | 1928263 | 1928538 | + | NZ_CP023525.1 | Cedecea neteri |
| 177 | 1457747 | 1458025 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 178 | 1554620 | 1554919 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 179 | 1318811 | 1319050 | + | NZ_CP046531.1 | Mannheimia ovis |
| 180 | 1478578 | 1478817 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 181 | 1778659 | 1778895 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 182 | 2473780 | 2474028 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 183 | 1509005 | 1509232 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP021376.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01612.22 | 0.79 | 143 | 2033 | same-strand | 3'-5' exonuclease |
| 2 | PF00570.25 | 0.79 | 144 | 2033.5 | same-strand | HRDC domain |
| 3 | PF03776.16 | 0.91 | 165 | 1665 | opposite-strand | Septum formation topological specificity factor MinE |
| 4 | PF13614.8 | 0.91 | 165 | 850.5 | opposite-strand | AAA domain |
| 5 | PF01656.25 | 0.91 | 165 | 850.5 | opposite-strand | CobQ/CobB/MinD/ParA nucleotide binding domain |
| 6 | PF03775.18 | 0.91 | 165 | 129.0 | opposite-strand | Septum formation inhibitor MinC, C-terminal domain |
| 7 | PF05209.15 | 0.91 | 165 | 129.0 | opposite-strand | Septum formation inhibitor MinC, N-terminal domain |
| 8 | PF00501.30 | 0.7 | 127 | 3225 | same-strand | AMP-binding enzyme |
| 9 | PF13193.8 | 0.7 | 127 | 3225 | same-strand | AMP-binding enzyme C-terminal domain |
| 10 | PF03692.17 | 0.81 | 148 | 1072 | same-strand | Putative zinc- or iron-chelating domain |
| 11 | PF01557.20 | 0.63 | 114 | 199 | same-strand | Fumarylacetoacetate (FAA) hydrolase family |
++ More..