Result : Q3APJ1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | CP000108.1 |
| Organism | Chlorobium chlorochromatii (strain CaD3) |
| Left | 2351236 |
| Right | 2351427 |
| Strand | - |
| Nucleotide Sequence | ATGAGCGACAACGATAAAACAGTTACAATTACCCAAGTACGCAGTGTGATTGGTTGTACCCAAAAACAAAAAGCAACTATTCAGGCTCTTGGACTTGGAAGACCTAATTATAGTGTTGTAAAACCAGATAATGCTTGTACAAGAGGTCAAATTCGTGTAGTACAACATTTGGTTAAGATTGAAGAAAACTAA |
| Sequence | MSDNDKTVTITQVRSVIGCTQKQKATIQALGLGRPNYSVVKPDNACTRGQIRVVQHLVKIEEN |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q3APJ1 |
| ORF Length (Amino Acid) | 63 |
++ More..
| Conservation Analysis |
No. of Species: 257
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2448202 | 2448357 | - | NC_010803.1 | Chlorobium limicola DSM 245 |
| 2 | 2239713 | 2239901 | - | NC_011059.1 | Prosthecochloris aestuarii DSM 271 |
| 3 | 196715 | 196870 | + | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 4 | 2789681 | 2789836 | - | NC_008639.1 | Chlorobium phaeobacteroides DSM 266 |
| 5 | 296541 | 296696 | + | NC_011060.1 | Pelodictyon phaeoclathratiforme BU-1 |
| 6 | 2055487 | 2055642 | - | NC_002932.3 | Chlorobaculum tepidum TLS |
| 7 | 2669728 | 2669883 | - | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 8 | 198527 | 198682 | + | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 9 | 1303298 | 1303498 | + | NC_011026.1 | Chloroherpeton thalassium ATCC 35110 |
| 10 | 1028524 | 1028709 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 11 | 1548068 | 1548229 | + | NC_015681.1 | Thermodesulfatator indicus DSM 15286 |
| 12 | 236019 | 236207 | - | NC_018178.1 | Melioribacter roseus P3M-2 |
| 13 | 1307381 | 1307560 | + | NZ_LS483464.1 | Corynebacterium renale |
| 14 | 1209429 | 1209584 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 15 | 1195767 | 1195925 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 16 | 1621222 | 1621404 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 17 | 378559 | 378744 | + | NZ_CP011546.1 | Corynebacterium uterequi |
| 18 | 761651 | 761809 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 19 | 3433869 | 3434048 | + | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 20 | 500754 | 500939 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 21 | 1007280 | 1007495 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 22 | 3696207 | 3696389 | + | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 23 | 375783 | 375941 | - | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 24 | 815017 | 815190 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 25 | 830209 | 830382 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 26 | 683341 | 683559 | + | NZ_CP036250.1 | Egicoccus halophilus |
| 27 | 3670134 | 3670310 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 28 | 1610282 | 1610464 | - | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 29 | 1561304 | 1561486 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 30 | 297739 | 297921 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 31 | 77387 | 77566 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 32 | 2575324 | 2575506 | + | NZ_CP070062.1 | Coprococcus comes |
| 33 | 3972186 | 3972371 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 34 | 1418379 | 1418561 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 35 | 1150057 | 1150239 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 36 | 580812 | 580967 | + | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 37 | 2542974 | 2543141 | - | NZ_CP031421.1 | Microbacterium oleivorans |
| 38 | 2055351 | 2055530 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 39 | 499940 | 500095 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 40 | 4764816 | 4764998 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 41 | 420755 | 420940 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 42 | 3991120 | 3991278 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 43 | 2737651 | 2737869 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 44 | 2510859 | 2511041 | - | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 45 | 3239868 | 3240050 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 46 | 372653 | 372835 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 47 | 412266 | 412448 | + | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 48 | 5457518 | 5457673 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 49 | 1300510 | 1300728 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 50 | 2693192 | 2693410 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 51 | 4426501 | 4426659 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 52 | 4547852 | 4548010 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 53 | 4681644 | 4681802 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 54 | 5850771 | 5850929 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 55 | 1642796 | 1642981 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 56 | 1104896 | 1105081 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 57 | 983702 | 983878 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 58 | 2544540 | 2544731 | - | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 59 | 3194255 | 3194422 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 60 | 449485 | 449670 | + | NZ_CP011545.1 | Corynebacterium testudinoris |
| 61 | 5085641 | 5085796 | - | NZ_CP039126.1 | Blautia producta |
| 62 | 240340 | 240495 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 63 | 777668 | 777859 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 64 | 1159046 | 1159219 | + | NC_013523.1 | Sphaerobacter thermophilus DSM 20745 |
| 65 | 1185579 | 1185734 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 66 | 1426496 | 1426651 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 67 | 569376 | 569558 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 68 | 2352197 | 2352385 | + | NC_016633.1 | Sphaerochaeta pleomorpha str. Grapes |
| 69 | 1643423 | 1643584 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 70 | 6739809 | 6739970 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 71 | 968005 | 968184 | - | NZ_CP014056.2 | Grimontia hollisae |
| 72 | 318917 | 319102 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 73 | 1987262 | 1987441 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 74 | 2477502 | 2477684 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 75 | 2046548 | 2046730 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 76 | 340756 | 340938 | + | NZ_LN879430.1 | Herbinix luporum |
| 77 | 1269202 | 1269390 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 78 | 509591 | 509773 | + | NZ_CP030280.1 | Blautia argi |
| 79 | 485928 | 486089 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 80 | 1138842 | 1138997 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 81 | 5770418 | 5770594 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 82 | 1698065 | 1698238 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 83 | 2055980 | 2056192 | - | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 84 | 5523691 | 5523846 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 85 | 392334 | 392513 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 86 | 5002788 | 5002970 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 87 | 555200 | 555382 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 88 | 107802 | 107984 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 89 | 1973321 | 1973500 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 90 | 2194375 | 2194530 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 91 | 1696887 | 1697054 | - | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 92 | 1504645 | 1504806 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 93 | 3531008 | 3531163 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 94 | 1696676 | 1696831 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 95 | 2807055 | 2807210 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 96 | 5572410 | 5572565 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 97 | 5278392 | 5278571 | + | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 98 | 553456 | 553611 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 99 | 971425 | 971598 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 100 | 1506293 | 1506475 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 101 | 243739 | 243918 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 102 | 1394818 | 1395000 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 103 | 2593878 | 2594057 | - | NZ_LR134483.1 | Listeria grayi |
| 104 | 3353429 | 3353611 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 105 | 3411257 | 3411439 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 106 | 348652 | 348834 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 107 | 644800 | 644979 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 108 | 2300503 | 2300682 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 109 | 712614 | 712793 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 110 | 3120659 | 3120841 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 111 | 3156207 | 3156389 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 112 | 1560054 | 1560236 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 113 | 321677 | 321853 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 114 | 156871 | 157056 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 115 | 1422735 | 1422893 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 116 | 2890540 | 2890722 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 117 | 2426065 | 2426244 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 118 | 2730483 | 2730650 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 119 | 1098884 | 1099039 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 120 | 1276166 | 1276348 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 121 | 3981543 | 3981749 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 122 | 5926993 | 5927175 | - | NZ_AP023355.1 | Actinocatenispora thailandica |
| 123 | 623885 | 624079 | + | NZ_CP066802.1 | Actinomyces weissii |
| 124 | 2309398 | 2309577 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 125 | 504687 | 504842 | - | NC_017079.1 | Caldilinea aerophila DSM 14535 = NBRC 104270 |
| 126 | 3990865 | 3991050 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 127 | 3568047 | 3568223 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 128 | 3820360 | 3820542 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 129 | 1231320 | 1231493 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 130 | 25685 | 25864 | + | NZ_CP034562.1 | Flammeovirga pectinis |
| 131 | 1163474 | 1163632 | + | NZ_AP018712.1 | Tepiditoga spiralis |
| 132 | 1710606 | 1710767 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 133 | 1774964 | 1775125 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 134 | 202123 | 202302 | - | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 135 | 1431078 | 1431257 | - | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 136 | 763037 | 763219 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 137 | 794190 | 794369 | + | NZ_AP018587.1 | Staphylococcus caprae |
| 138 | 776672 | 776851 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 139 | 903605 | 903760 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 140 | 1972433 | 1972612 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 141 | 730042 | 730221 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 142 | 796735 | 796914 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 143 | 2096104 | 2096289 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 144 | 617658 | 617837 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 145 | 70590 | 70769 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 146 | 77697 | 77876 | + | NZ_CP065211.1 | Enterococcus lactis |
| 147 | 2240329 | 2240508 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 148 | 1722090 | 1722269 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 149 | 770131 | 770289 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 150 | 74995 | 75174 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 151 | 3729197 | 3729367 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 152 | 4866926 | 4867111 | + | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 153 | 2694997 | 2695176 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 154 | 2592523 | 2592702 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 155 | 2718408 | 2718587 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 156 | 2697267 | 2697446 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 157 | 387160 | 387339 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 158 | 1763148 | 1763327 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 159 | 1662620 | 1662799 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 160 | 3857733 | 3857906 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 161 | 5051181 | 5051336 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 162 | 2195478 | 2195633 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 163 | 4694783 | 4694938 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 164 | 565649 | 565828 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 165 | 1515096 | 1515275 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 166 | 716328 | 716507 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 167 | 754667 | 754846 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 168 | 2163785 | 2163964 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 169 | 2265257 | 2265436 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 170 | 4492886 | 4493068 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 171 | 251661 | 251843 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 172 | 64695 | 64880 | + | NZ_CP036259.1 | Sporomusa termitida |
| 173 | 4358735 | 4358908 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 174 | 3512060 | 3512242 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 175 | 581987 | 582166 | - | NZ_CP023011.2 | Enterococcus hirae |
| 176 | 3165955 | 3166134 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 177 | 1157150 | 1157308 | + | NZ_CP018044.1 | Bifidobacterium choerinum |
| 178 | 1777259 | 1777438 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 179 | 2602841 | 2603020 | - | NZ_LT906444.1 | Listeria welshimeri |
| 180 | 2686410 | 2686568 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 181 | 482678 | 482857 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 182 | 2926458 | 2926616 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 183 | 1528423 | 1528608 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 184 | 668910 | 669095 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 185 | 4320063 | 4320248 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 186 | 321476 | 321634 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 187 | 3317516 | 3317674 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 188 | 3554035 | 3554208 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 189 | 7656380 | 7656562 | - | NC_014666.1 | Frankia inefficax |
| 190 | 1252557 | 1252742 | - | NZ_AP017457.1 | Aurantimicrobium minutum |
| 191 | 1070417 | 1070584 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 192 | 2795200 | 2795373 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 193 | 2573992 | 2574174 | - | NZ_CP015961.1 | Dietzia timorensis |
| 194 | 3599820 | 3599999 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 195 | 2991390 | 2991572 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 196 | 2439138 | 2439302 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 197 | 2439077 | 2439241 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 198 | 3897971 | 3898144 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 199 | 150438 | 150608 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 200 | 281413 | 281589 | - | NZ_CP026363.1 | Brevibacillus agri |
| 201 | 6059558 | 6059734 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 202 | 1054886 | 1055041 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 203 | 2397671 | 2397841 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 204 | 3600058 | 3600240 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 205 | 4465191 | 4465373 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 206 | 3617892 | 3618050 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 207 | 534497 | 534679 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 208 | 1286618 | 1286797 | + | NZ_CP027770.1 | Staphylococcus felis |
| 209 | 3486266 | 3486454 | - | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 210 | 642818 | 642976 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 211 | 2126015 | 2126200 | - | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 212 | 2251723 | 2251902 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 213 | 2642255 | 2642422 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 214 | 766462 | 766647 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 215 | 789558 | 789734 | + | NC_013525.1 | Thermobaculum terrenum ATCC BAA-798 |
| 216 | 5202444 | 5202629 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 217 | 4500605 | 4500826 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 218 | 1308004 | 1308186 | - | NZ_CP027228.1 | Mogibacterium diversum |
| 219 | 221509 | 221685 | - | NZ_CP034437.1 | Paenibacillus albus |
| 220 | 1313472 | 1313654 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 221 | 3615911 | 3616093 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 222 | 2348032 | 2348202 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 223 | 146225 | 146386 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 224 | 4175562 | 4175741 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 225 | 339364 | 339546 | + | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 226 | 686773 | 686958 | + | NC_007777.1 | Frankia casuarinae |
| 227 | 2069192 | 2069371 | - | NZ_LT906473.1 | Corynebacterium cystitidis |
| 228 | 1052258 | 1052437 | - | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 229 | 2719431 | 2719613 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 230 | 5536065 | 5536244 | + | NZ_CP014263.1 | Spirosoma montaniterrae |
| 231 | 4056304 | 4056459 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 232 | 570167 | 570349 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 233 | 796978 | 797163 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 234 | 2525576 | 2525758 | - | NZ_CP015449.1 | Dietzia lutea |
| 235 | 471387 | 471545 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 236 | 3946501 | 3946686 | - | NZ_CP019870.1 | Clostridioides difficile |
| 237 | 250649 | 250828 | - | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 238 | 248192 | 248371 | - | NZ_CP040106.1 | Echinicola rosea |
| 239 | 2318163 | 2318348 | + | NZ_CP023777.1 | Chitinophaga caeni |
| 240 | 147210 | 147365 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 241 | 394523 | 394702 | + | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 242 | 1470291 | 1470473 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 243 | 1827911 | 1828090 | + | NC_018010.1 | Belliella baltica DSM 15883 |
| 244 | 2042287 | 2042454 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 245 | 1717187 | 1717348 | - | NC_015387.1 | Marinithermus hydrothermalis DSM 14884 |
| 246 | 2502062 | 2502229 | + | NZ_LN849456.1 | Devriesea agamarum |
| 247 | 3457479 | 3457661 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 248 | 1794698 | 1794877 | + | NZ_CP020105.1 | Spirosoma rigui |
| 249 | 4496738 | 4496917 | + | NZ_CP021235.1 | Pontibacter actiniarum |
| 250 | 2160321 | 2160491 | - | NC_008148.1 | Rubrobacter xylanophilus DSM 9941 |
| 251 | 1256344 | 1256523 | + | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 252 | 968209 | 968391 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 253 | 83453 | 83632 | + | NZ_CP053435.1 | Spirosoma taeanense |
| 254 | 3757457 | 3757636 | - | NZ_CP025096.1 | Spirosoma pollinicola |
| 255 | 6241769 | 6241948 | + | NZ_CP010429.1 | Spirosoma radiotolerans |
| 256 | 169095 | 169274 | - | NZ_CP050063.1 | Spirosoma aureum |
| 257 | 453627 | 453806 | - | NZ_CP020104.1 | Spirosoma aerolatum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010803.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00344.22 | 0.77 | 197 | 474 | same-strand | SecY |
| 2 | PF00828.21 | 0.99 | 255 | 17 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 3 | PF03719.17 | 1.0 | 256 | 16.5 | same-strand | Ribosomal protein S5, C-terminal domain |
| 4 | PF00333.22 | 1.0 | 256 | 16.5 | same-strand | Ribosomal protein S5, N-terminal domain |
| 5 | PF00861.24 | 0.99 | 255 | 552 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 6 | PF00347.25 | 1.0 | 257 | 987 | same-strand | Ribosomal protein L6 |
| 7 | PF00410.21 | 1.0 | 257 | 1572 | same-strand | Ribosomal protein S8 |
| 8 | PF00253.23 | 0.84 | 215 | 2024 | same-strand | Ribosomal protein S14p/S29e |
++ More..