Result : Q3ANZ6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative membrane protein insertion efficiency factor |
| NCBI Accession ID | CP000108.1 |
| Organism | Chlorobium chlorochromatii (strain CaD3) |
| Left | 2570807 |
| Right | 2571091 |
| Strand | - |
| Nucleotide Sequence | ATGAGCATCTGGAAGATTATTAATGCTATTCCGATTGTTCTGATTCGCTTGTACCGTACCTTTTTATCGCCTCTTTTAGGTCCTTCTTGTAAGTACGTCCCTACCTGTTCGAGTTATGCGCTTGAGGCTTTTGAGCGGCATAACTTTTTTTATGCCCTTTGGTTAACCATATGGCGTATTTTACGCTGCAATCCTTTTTCAAAAGGGGGATATGATCCTGTGCCACCTCTTCAAGGCACTCAACAATCCTCATCTCATCATCAAGAGTCATCTCATCATGGATAA |
| Sequence | MSIWKIINAIPIVLIRLYRTFLSPLLGPSCKYVPTCSSYALEAFERHNFFYALWLTIWRILRCNPFSKGGYDPVPPLQGTQQSSSHHQESSHHG |
| Source of smORF | Swiss-Prot |
| Function | Could be involved in insertion of integral membrane proteins into the membrane. {ECO:0000255|HAMAP-Rule:MF_00386}. |
| Pubmed ID | |
| Domain | CDD:412414 |
| Functional Category | Others |
| Uniprot ID | Q3ANZ6 |
| ORF Length (Amino Acid) | 94 |
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| Conservation Analysis |
No. of Species: 30
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3016790 | 3017074 | - | NC_011060.1 | Pelodictyon phaeoclathratiforme BU-1 |
| 2 | 2288026 | 2288268 | - | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 3 | 2794115 | 2794357 | - | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 4 | 3132426 | 3132704 | - | NC_008639.1 | Chlorobium phaeobacteroides DSM 266 |
| 5 | 2361963 | 2362223 | - | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 6 | 2511479 | 2511757 | - | NC_011059.1 | Prosthecochloris aestuarii DSM 271 |
| 7 | 6427557 | 6427829 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 8 | 4998341 | 4998634 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 9 | 2538664 | 2538939 | - | NZ_LR134302.1 | Achromobacter spanius |
| 10 | 1961502 | 1961813 | + | NC_020304.1 | Desulfocapsa sulfexigens DSM 10523 |
| 11 | 870630 | 870863 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 12 | 5132978 | 5133208 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 13 | 2294698 | 2294937 | + | NZ_CP020772.1 | Halobacillus mangrovi |
| 14 | 516443 | 516676 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 15 | 1738649 | 1738885 | - | NC_021291.1 | Spiribacter salinus M19-40 |
| 16 | 1165 | 1398 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 17 | 679484 | 679723 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 18 | 4037052 | 4037300 | - | NZ_LR134531.1 | Pragia fontium |
| 19 | 652578 | 652808 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 20 | 1863616 | 1863852 | - | NC_017856.1 | Methylophaga frappieri |
| 21 | 1637934 | 1638170 | + | NZ_CP023049.2 | Chryseobacterium piperi |
| 22 | 388623 | 388883 | - | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 23 | 1925828 | 1926064 | - | NC_022664.1 | Spiribacter curvatus |
| 24 | 2147438 | 2147668 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 25 | 1606815 | 1607066 | + | NZ_CP050995.1 | Chryseobacterium gallinarum |
| 26 | 1354640 | 1354879 | + | NZ_CP030918.1 | Paracoccus suum |
| 27 | 3282154 | 3282390 | - | NZ_LR134503.1 | Kaistella jeonii |
| 28 | 2366017 | 2366247 | - | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 29 | 5698562 | 5698807 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 30 | 2548 | 2790 | + | NC_022567.1 | Adlercreutzia equolifaciens DSM 19450 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011060.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02096.22 | 0.6 | 18 | 5.5 | same-strand | 60Kd inner membrane protein |
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