Result : Q3A6Y1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0235 protein Pcar_0617 |
| NCBI Accession ID | CP000142.2 |
| Organism | Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) |
| Left | 746442 |
| Right | 746729 |
| Strand | + |
| Nucleotide Sequence | ATGGCGGAATGTCTGTCGCAAACCGATAAGGGCGTTGTGCTCAGTGTCCATGTGCAACCGCGGGCCAGTCGGAATGAATTGGCCGGTTTGCAGGGGGAAAGTCTCAAAATCCGCCTCACCTCACCGCCGGTTGAAGGTGCCGCCAATAAATTGTGCCGGGAATTTCTCGCCAAATTGCTGGGGGTGGCCAAAAGTCGGGTGACCCTCGTGTCCGGTGATAAATCGCGTCATAAACGTCTCCTTATCGAGGGTGTTACTCTCGATGAAGTACGCAATAAACTGCTTTAA |
| Sequence | MAECLSQTDKGVVLSVHVQPRASRNELAGLQGESLKIRLTSPPVEGAANKLCREFLAKLLGVAKSRVTLVSGDKSRHKRLLIEGVTLDEVRNKLL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00811. Profile Description: Uncharacterized ACR, YggU family COG1872. hypothetical protein; Validated |
| Pubmed ID | |
| Domain | CDD:412584 |
| Functional Category | Others |
| Uniprot ID | Q3A6Y1 |
| ORF Length (Amino Acid) | 95 |
++ More..
| Conservation Analysis |
No. of Species: 32
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 746442 | 746729 | + | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 2 | 2773664 | 2773954 | + | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 3 | 2522565 | 2522852 | - | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 4 | 2681396 | 2681689 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 5 | 1378761 | 1379069 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 6 | 1289079 | 1289321 | - | NC_007517.1 | Geobacter metallireducens GS-15 |
| 7 | 23904 | 24185 | + | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 8 | 922319 | 922567 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 9 | 1988639 | 1988893 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 10 | 2646716 | 2647024 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 11 | 395338 | 395643 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 12 | 2668984 | 2669235 | + | NZ_CP040098.1 | Desulfoglaeba alkanexedens ALDC |
| 13 | 330070 | 330348 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 14 | 3055010 | 3055252 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 15 | 490981 | 491232 | - | NZ_AP013035.1 | Thermosulfidibacter takaii ABI70S6 |
| 16 | 1730673 | 1730915 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 17 | 3624718 | 3624957 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 18 | 2139730 | 2139981 | + | NZ_CP010904.1 | Kiritimatiella glycovorans |
| 19 | 1736443 | 1736712 | - | NC_002932.3 | Chlorobaculum tepidum TLS |
| 20 | 4962577 | 4962885 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 21 | 1112342 | 1112590 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 22 | 47492 | 47785 | + | NC_011026.1 | Chloroherpeton thalassium ATCC 35110 |
| 23 | 268065 | 268316 | - | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 24 | 6222483 | 6222734 | + | NC_017030.1 | Corallococcus coralloides DSM 2259 |
| 25 | 1925090 | 1925347 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 26 | 2200782 | 2201051 | - | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 27 | 2653710 | 2654003 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 28 | 1030084 | 1030377 | - | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 29 | 3888325 | 3888609 | - | NZ_CP016210.1 | Azoarcus olearius |
| 30 | 1810246 | 1810527 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 31 | 2130065 | 2130361 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 32 | 4588140 | 4588436 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007498.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02325.19 | 0.72 | 23 | 496 | same-strand | YGGT family |
++ More..