Result : Q32F31
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YobH |
| NCBI Accession ID | CP000034.1 |
| Organism | Shigella dysenteriae serotype 1 (strain Sd197) |
| Left | 1793426 |
| Right | 1793665 |
| Strand | + |
| Nucleotide Sequence | ATGCGATTCATCATTCGCACAGTTATGCTGATAGCACTGGTATGGATAGGATTATTACTCAGCGGATATGGCGTTTTGATTGGAAGCAAAGAGAATGCCGCAGGATTAGGTTTGCAATGTACCTATCTGACTGCCAGAGGCACCAGCACGGTACAATACTTGCACACTAAAAGTGGTTTTTTGGGGATAACAGATTGCCCGCTGTTACGCAAAAGCAATATCGTGGTCGATAATGGTTAA |
| Sequence | MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLTARGTSTVQYLHTKSGFLGITDCPLLRKSNIVVDNG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam13996. Profile Description: YobH-like protein. The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL. |
| Pubmed ID | 16275786 |
| Domain | CDD:404816 |
| Functional Category | Others |
| Uniprot ID | Q32F31 |
| ORF Length (Amino Acid) | 79 |
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| Conservation Analysis |
No. of Species: 93
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1809344 | 1809583 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1908925 | 1909164 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1440356 | 1440595 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 2510892 | 2511131 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 1841836 | 1842075 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 1940973 | 1941212 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 1367709 | 1367948 | + | NZ_CP038469.1 | Citrobacter tructae |
| 8 | 1116180 | 1116419 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 9 | 2788394 | 2788633 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 4520554 | 4520793 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 562761 | 563000 | + | NZ_CP033744.1 | Citrobacter freundii |
| 12 | 4154157 | 4154396 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 13 | 1546846 | 1547085 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 14 | 1989747 | 1989986 | - | NZ_CP041247.1 | Raoultella electrica |
| 15 | 2064255 | 2064494 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 16 | 2800139 | 2800378 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 17 | 4490675 | 4490914 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 18 | 1985320 | 1985559 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 19 | 2104625 | 2104864 | - | NZ_CP050508.1 | Raoultella terrigena |
| 20 | 5212991 | 5213230 | + | NZ_CP026047.1 | Raoultella planticola |
| 21 | 1880603 | 1880842 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 22 | 1821515 | 1821754 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 23 | 2852850 | 2853089 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 24 | 1899743 | 1899982 | - | NZ_CP023525.1 | Cedecea neteri |
| 25 | 2251509 | 2251748 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 26 | 2342447 | 2342686 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 27 | 237160 | 237399 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 28 | 1937217 | 1937456 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 29 | 4448233 | 4448472 | + | NZ_CP053416.1 | Salmonella bongori |
| 30 | 604594 | 604833 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 31 | 3768669 | 3768908 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 32 | 2679213 | 2679452 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 33 | 2730554 | 2730793 | + | NC_015968.1 | Enterobacter soli |
| 34 | 2776705 | 2776944 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 35 | 690564 | 690803 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 36 | 2888331 | 2888570 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 37 | 2225087 | 2225326 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 38 | 2799091 | 2799330 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 39 | 2982137 | 2982376 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 40 | 1798981 | 1799220 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 41 | 2540192 | 2540431 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 42 | 1964638 | 1964877 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 43 | 2019789 | 2020028 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 44 | 122897 | 123136 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 45 | 2011397 | 2011636 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 46 | 3337457 | 3337696 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 47 | 1879730 | 1879969 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 48 | 1462340 | 1462579 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 49 | 2781440 | 2781676 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 50 | 1947752 | 1947991 | - | NZ_CP054254.1 | Klebsiella variicola |
| 51 | 1810041 | 1810277 | - | NZ_CP038853.1 | Pantoea vagans |
| 52 | 2249393 | 2249629 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 53 | 1828538 | 1828774 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 54 | 696104 | 696343 | + | NZ_CP049115.1 | Pantoea stewartii |
| 55 | 2515268 | 2515507 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 56 | 4260120 | 4260335 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 57 | 894276 | 894515 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 58 | 2078490 | 2078726 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 59 | 1825552 | 1825791 | - | NZ_LR134201.1 | Cedecea lapagei |
| 60 | 2431771 | 2432013 | + | NZ_CP061511.1 | Mixta calida |
| 61 | 1728626 | 1728862 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 62 | 2168254 | 2168490 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 63 | 2111893 | 2112129 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 64 | 2597397 | 2597636 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 65 | 2555225 | 2555467 | + | NZ_CP026377.1 | Mixta gaviniae |
| 66 | 2183673 | 2183909 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 67 | 261721 | 261960 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 68 | 1891561 | 1891800 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 69 | 1629179 | 1629418 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 70 | 4062590 | 4062826 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 71 | 2556189 | 2556428 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 72 | 1937815 | 1938051 | + | NZ_CP067057.1 | Rahnella aceris |
| 73 | 4383910 | 4384143 | + | NZ_CP065640.1 | Serratia rubidaea |
| 74 | 2099275 | 2099508 | - | NZ_CP071320.1 | Serratia ureilytica |
| 75 | 860730 | 860948 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 76 | 692512 | 692739 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 77 | 3025178 | 3025411 | + | NZ_LT906479.1 | Serratia ficaria |
| 78 | 1993305 | 1993511 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 79 | 3640461 | 3640667 | - | NZ_CP007230.1 | Yersinia similis |
| 80 | 3439662 | 3439904 | - | NZ_CP019706.1 | Pantoea alhagi |
| 81 | 3098790 | 3099023 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 82 | 2613239 | 2613448 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 83 | 2015027 | 2015236 | - | NZ_CP043727.1 | Yersinia canariae |
| 84 | 2297713 | 2297946 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 85 | 3000411 | 3000644 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 86 | 2581747 | 2581956 | + | NZ_CP046293.1 | Yersinia intermedia |
| 87 | 3204647 | 3204856 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 88 | 3538871 | 3539107 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 89 | 1470642 | 1470854 | - | NZ_CP032487.1 | Yersinia hibernica |
| 90 | 3105818 | 3106051 | + | NZ_LR134494.1 | Serratia quinivorans |
| 91 | 3110921 | 3111154 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 92 | 1630150 | 1630392 | + | NZ_CP028271.1 | Mixta intestinalis |
| 93 | 942949 | 943161 | + | NZ_CP009787.1 | Yersinia rohdei |
| 94 | 2240786 | 2240995 | + | NZ_CP015581.1 | Tatumella citrea |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04352.15 | 0.73 | 68 | 5629 | opposite-strand | ProQ/FINO family |
| 2 | PF17516.4 | 0.73 | 68 | 5629 | opposite-strand | ProQ C-terminal domain |
| 3 | PF17804.3 | 0.8 | 74 | 3569 | opposite-strand | Tail specific protease N-terminal domain |
| 4 | PF03572.20 | 0.8 | 74 | 3569 | opposite-strand | Peptidase family S41 |
| 5 | PF11818.10 | 0.8 | 74 | 3569 | opposite-strand | C-terminal domain of tail specific protease (DUF3340) |
| 6 | PF00595.26 | 0.8 | 74 | 3569 | opposite-strand | PDZ domain |
| 7 | PF17820.3 | 0.8 | 74 | 3569 | opposite-strand | PDZ domain |
| 8 | PF01435.20 | 0.8 | 74 | 2462 | opposite-strand | Peptidase family M48 |
| 9 | PF07690.18 | 0.66 | 61 | 1034.5 | same-strand | Major Facilitator Superfamily |
| 10 | PF01614.20 | 0.75 | 70 | 58 | opposite-strand | Bacterial transcriptional regulator |
| 11 | PF09339.12 | 0.75 | 70 | 58 | opposite-strand | IclR helix-turn-helix domain |
| 12 | PF13412.8 | 0.74 | 69 | 58.5 | opposite-strand | Winged helix-turn-helix DNA-binding |
| 13 | PF13974.8 | 1.0 | 93 | 378.0 | opposite-strand | YebO-like protein |
| 14 | PF00313.24 | 0.78 | 73 | 2171.0 | opposite-strand | 'Cold-shock' DNA-binding domain |
| 15 | PF13649.8 | 0.72 | 67 | 2729.0 | opposite-strand | Methyltransferase domain |
| 16 | PF08241.14 | 0.72 | 67 | 2729.0 | opposite-strand | Methyltransferase domain |
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