* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007519.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13426.9
|
1.0
|
2
|
4679
|
opposite-strand
|
PAS domain
|
2
|
PF01878.20
|
1.0
|
2
|
-3.0
|
same-strand
|
EVE domain
|
3
|
PF02457.18
|
1.0
|
2
|
653.0
|
same-strand
|
DisA bacterial checkpoint controller nucleotide-binding
|
4
|
PF08497.12
|
1.0
|
2
|
3550.5
|
same-strand
|
Radical SAM N-terminal
|
5
|
PF04055.23
|
1.0
|
2
|
3550.5
|
same-strand
|
Radical SAM superfamily
|
6
|
PF02518.28
|
1.0
|
2
|
5729.5
|
opposite-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
7
|
PF00512.27
|
1.0
|
2
|
5729.5
|
opposite-strand
|
His Kinase A (phospho-acceptor) domain
|
8
|
PF01590.28
|
1.0
|
2
|
5729.5
|
opposite-strand
|
GAF domain
|
9
|
PF08448.12
|
1.0
|
2
|
5729.5
|
opposite-strand
|
PAS fold
|
10
|
PF13185.8
|
1.0
|
2
|
5729.5
|
opposite-strand
|
GAF domain
|
11
|
PF00989.27
|
1.0
|
2
|
5729.5
|
opposite-strand
|
PAS fold
|
++ More..