Result : A7MTC2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Trp operon repressor homolog |
| NCBI Accession ID | CP000789.1 |
| Organism | Vibrio campbellii (strain ATCC BAA-1116 / BB120) |
| Left | 1009682 |
| Right | 1009984 |
| Strand | + |
| Nucleotide Sequence | ATGTCACACGAACCTGAGTACAAAGACTGGCAACAGATTGTCGAACTGATCCGTTCTAGCGTGGATAACCAGCAACATGAGATGTTGTTAACCATGTTGATGACGCCAGATGAGAGAGAGTCGCTTACTGCACGCGTCAACATTCTGAATGAACTGCTCAAGGGCGAGCTTTCTCAGCGCCAAATCAGTCAAATGCTTGGAGTGGGTATTGCCACCATCACTCGTGGTTCGAATGAGTTAAAGTCGAAGTCGGATACGGACAAAGACAAACTCAAGACATTATTAGAGCAGGGTGCCCAATAA |
| Sequence | MSHEPEYKDWQQIVELIRSSVDNQQHEMLLTMLMTPDERESLTARVNILNELLKGELSQRQISQMLGVGIATITRGSNELKSKSDTDKDKLKTLLEQGAQ |
| Source of smORF | Swiss-Prot |
| Function | This protein is an aporepressor. When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription. {ECO:0000255|HAMAP-Rule:MF_00475}. |
| Pubmed ID | |
| Domain | CDD:419669 |
| Functional Category | DNA-binding |
| Uniprot ID | A7MTC2 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 50
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 539263 | 539565 | + | NZ_CP030788.1 | Vibrio campbellii |
| 2 | 1267828 | 1268130 | - | NZ_CP019959.1 | Vibrio owensii |
| 3 | 1685037 | 1685339 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 4 | 2562922 | 2563224 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 5 | 760748 | 761050 | + | NZ_CP009467.1 | Vibrio harveyi |
| 6 | 2696750 | 2697061 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 7 | 2354355 | 2354654 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 8 | 3104702 | 3105010 | - | NC_013456.1 | Vibrio antiquarius |
| 9 | 2581177 | 2581479 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 10 | 707651 | 707959 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 11 | 580001 | 580297 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 12 | 258710 | 259003 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 13 | 639543 | 639842 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 14 | 2263426 | 2263719 | - | NZ_AP019657.1 | Vibrio ponticus |
| 15 | 590946 | 591242 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 16 | 2659240 | 2659536 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 17 | 2385262 | 2385564 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 18 | 3079627 | 3079920 | - | NZ_CP040990.1 | Vibrio furnissii |
| 19 | 600043 | 600354 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 20 | 2242468 | 2242764 | - | NZ_CP033078.1 | Vibrio zhugei |
| 21 | 355907 | 356206 | + | NZ_CP035688.1 | Vibrio metoecus |
| 22 | 2825951 | 2826247 | - | NZ_AP014635.1 | Vibrio tritonius |
| 23 | 577704 | 578000 | + | NC_011753.2 | Vibrio atlanticus |
| 24 | 2694943 | 2695236 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 25 | 587805 | 588101 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 26 | 827882 | 828175 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 27 | 2483333 | 2483626 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 28 | 616125 | 616421 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 29 | 732680 | 733006 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 30 | 746967 | 747266 | + | NZ_CP046268.1 | Vibrio spartinae |
| 31 | 2242058 | 2242378 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 32 | 1969331 | 1969624 | + | NZ_CP014056.2 | Grimontia hollisae |
| 33 | 523957 | 524226 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 34 | 2818573 | 2818845 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 35 | 2150266 | 2150535 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 36 | 2842648 | 2842965 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 37 | 3548198 | 3548458 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 38 | 1796781 | 1797044 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 39 | 709007 | 709336 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 40 | 612524 | 612856 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 41 | 2618590 | 2618910 | + | NZ_CP011254.1 | Serratia fonticola |
| 42 | 3872417 | 3872671 | - | NZ_CP050150.1 | Hafnia alvei |
| 43 | 857818 | 858120 | + | NZ_LR134531.1 | Pragia fontium |
| 44 | 3807207 | 3807464 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 45 | 2207192 | 2207446 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 46 | 636007 | 636264 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 47 | 638015 | 638278 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 48 | 5298952 | 5299215 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 49 | 2905440 | 2905775 | - | NZ_CP067057.1 | Rahnella aceris |
| 50 | 696096 | 696359 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP030788.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02153.19 | 0.6 | 30 | 5544.5 | same-strand | Prephenate dehydrogenase |
| 2 | PF01817.23 | 0.64 | 32 | 4318.0 | both-strands | Chorismate mutase type II |
| 3 | PF07238.16 | 0.64 | 32 | 4192.5 | opposite-strand | PilZ domain |
| 4 | PF00005.29 | 0.98 | 49 | 2328.5 | opposite-strand | ABC transporter |
| 5 | PF12848.9 | 0.98 | 49 | 2332 | opposite-strand | ABC transporter |
| 6 | PF01464.22 | 1.0 | 50 | 83 | same-strand | Transglycosylase SLT domain |
| 7 | PF14718.8 | 1.0 | 50 | 65.5 | same-strand | Soluble lytic murein transglycosylase L domain |
| 8 | PF01931.20 | 1.0 | 50 | 58.0 | opposite-strand | Protein of unknown function DUF84 |
| 9 | PF00800.20 | 0.6 | 30 | 830.0 | opposite-strand | Prephenate dehydratase |
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