Result : Q2S3E3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L31 |
| NCBI Accession ID | CP000159.1 |
| Organism | Salinibacter ruber (strain DSM 13855 / M31) |
| Left | 1463613 |
| Right | 1463867 |
| Strand | + |
| Nucleotide Sequence | ATGCAACACGATCTGCACCCCGAGTACAGCGAAGTAACCATCCAACTCGCGGACGGCTCCGAAATCACGACCCGGTCCACGATGGAGACCGACTCGTACGAGACCGAGGTCGACTCGACGAATCATCCGTTCTACACCGGCCGCCGTCAGTTCGTCGACACGGCCGGCCGCGTTGAGAAGTTCAACCGCCGGTACGGGCTCACCGATGACGACGAGGGAGACGACGAAGAGACGGAAGACGCCGCCGACGAGTAG |
| Sequence | MQHDLHPEYSEVTIQLADGSEITTRSTMETDSYETEVDSTNHPFYTGRRQFVDTAGRVEKFNRRYGLTDDDEGDDEETEDAADE |
| Source of smORF | Swiss-Prot |
| Function | Binds the 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_00501}. |
| Pubmed ID | 16330755 |
| Domain | CDD:412343 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q2S3E3 |
| ORF Length (Amino Acid) | 84 |
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| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1428335 | 1428589 | + | NZ_CP030356.1 | Salinibacter ruber |
| 2 | 84141 | 84392 | - | NC_013501.1 | Rhodothermus marinus DSM 4252 |
| 3 | 538550 | 538762 | + | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 4 | 271995 | 272204 | + | NZ_CP036150.1 | Oceanispirochaeta crateris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_013501.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00006.27 | 0.75 | 3 | 123 | same-strand | ATP synthase alpha/beta family, nucleotide-binding domain |
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