Protein Information |
Information Type | Description |
---|---|
Protein name | YcgL domain-containing protein XOO0428 |
NCBI Accession ID | AP008229.1 |
Organism | Xanthomonas oryzae pv. oryzae (strain MAFF 311018) |
Left | 460795 |
Right | 461055 |
Strand | + |
Nucleotide Sequence | ATGCACGCCTACGTCTATAAAAGCCAACGCAAGCAGGACACCTTCGTCTATCTCGCCACGCGTGACGATTTCTCCGGTCTTCCTGCCGAAGTGCAGGCGCAGCTGGCGCCGTTTTCGTTCGTGCTGGAGGTGGCGTTGACGCCCGAGCGACGGCTGGCGCAGGCCGACGTGGCAACGGTGCGCGAGGCGCTGGGCAAGCACGGTTTCTATCTGCAATTGCCGAAAACACGCGTGCTCGCAGGCGAGTGCGACTATGACTGA |
Sequence | MHAYVYKSQRKQDTFVYLATRDDFSGLPAEVQAQLAPFSFVLEVALTPERRLAQADVATVREALGKHGFYLQLPKTRVLAGECDYD |
Source of smORF | Swiss-Prot |
Function | The ORF matches to the profile of cl22628. Profile Description: YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure. |
Pubmed ID | |
Domain | CDD:419850 |
Functional Category | Others |
Uniprot ID | Q2P8E4 |
ORF Length (Amino Acid) | 86 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 337816 | 338076 | + | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
2 | 2533048 | 2533308 | - | NZ_CP018725.1 | Xanthomonas vesicatoria ATCC 35937 |
3 | 4571261 | 4571521 | - | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
4 | 4769768 | 4770028 | - | NZ_CP048044.1 | Xanthomonas citri |
5 | 4688779 | 4689039 | - | NZ_CP072268.1 | Xanthomonas euvesicatoria pv. alfalfae |
6 | 3912512 | 3912772 | - | NZ_LT853882.1 | Xanthomonas fragariae |
7 | 315439 | 315699 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
8 | 3235984 | 3236244 | - | NZ_CP016878.1 | Xanthomonas hortorum |
9 | 4623160 | 4623420 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
10 | 3914552 | 3914827 | - | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
11 | 945905 | 946177 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
12 | 4463306 | 4463566 | - | NZ_CP037883.1 | Stenotrophomonas indicatrix |
13 | 1837423 | 1837692 | + | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
14 | 2749485 | 2749754 | - | NZ_CP071517.1 | Lysobacter arenosi |
15 | 3503197 | 3503466 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
16 | 297177 | 297446 | + | NZ_CP046603.1 | Lysobacter soli |
17 | 478068 | 478325 | - | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
18 | 3314829 | 3315083 | - | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
19 | 329096 | 329353 | + | NZ_CP011129.1 | Lysobacter antibioticus |
20 | 5678188 | 5678457 | - | NZ_AP014940.1 | Lysobacter enzymogenes |
21 | 430883 | 431152 | + | NZ_CP029843.1 | Lysobacter maris |
22 | 1671725 | 1671994 | + | NZ_CP060711.1 | Thermomonas brevis |
23 | 2242747 | 2243007 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
24 | 180204 | 180464 | + | NZ_CP046570.1 | Xanthomonas albilineans |
25 | 2302137 | 2302409 | + | NZ_CP029556.1 | Lysobacter oculi |
26 | 4309665 | 4309925 | - | NZ_LS483377.1 | Stenotrophomonas maltophilia |
27 | 5648710 | 5648982 | - | NZ_CP023465.1 | Lysobacter capsici |
28 | 1799320 | 1799592 | + | NZ_CP042218.1 | Luteimonas granuli |
29 | 3277103 | 3277348 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
30 | 3379581 | 3379817 | - | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF12796.9 | 0.93 | 28 | -7.0 | same-strand | Ankyrin repeats (3 copies) |
2 | PF13637.8 | 0.93 | 28 | -7.0 | same-strand | Ankyrin repeats (many copies) |
3 | PF13857.8 | 0.93 | 28 | -7.0 | same-strand | Ankyrin repeats (many copies) |
4 | PF00999.23 | 0.67 | 20 | 3664.0 | opposite-strand | Sodium/hydrogen exchanger family |
5 | PF02254.20 | 0.7 | 21 | 3670 | opposite-strand | TrkA-N domain |