* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP006569.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03741.18
|
1.0
|
2
|
4062.5
|
same-strand
|
Integral membrane protein TerC family
|
2
|
PF03471.19
|
1.0
|
2
|
4062.5
|
same-strand
|
Transporter associated domain
|
3
|
PF03313.17
|
1.0
|
2
|
2490.5
|
opposite-strand
|
Serine dehydratase alpha chain
|
4
|
PF03315.17
|
1.0
|
2
|
2490.5
|
opposite-strand
|
Serine dehydratase beta chain
|
5
|
PF00293.30
|
1.0
|
2
|
1544.0
|
opposite-strand
|
NUDIX domain
|
6
|
PF00425.20
|
1.0
|
2
|
147.5
|
opposite-strand
|
chorismate binding enzyme
|
7
|
PF04715.15
|
1.0
|
2
|
147.5
|
opposite-strand
|
Anthranilate synthase component I, N terminal region
|
8
|
PF01042.23
|
1.0
|
2
|
27.5
|
opposite-strand
|
Endoribonuclease L-PSP
|
9
|
PF13307.8
|
1.0
|
2
|
525.5
|
same-strand
|
Helicase C-terminal domain
|
10
|
PF04851.17
|
1.0
|
2
|
525.5
|
same-strand
|
Type III restriction enzyme, res subunit
|
11
|
PF03843.15
|
1.0
|
2
|
3361.0
|
same-strand
|
Outer membrane lipoprotein Slp family
|
++ More..