Result : Q2NIX2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | CP000061.1 |
| Organism | Aster yellows witches'-broom phytoplasma (strain AYWB) |
| Left | 524026 |
| Right | 524223 |
| Strand | - |
| Nucleotide Sequence | ATGAAATTAAAAATTACTCTTACCAAAAGTCTTATTGCTTGTCGTTTTAATCAAATTAAAACCGCTCACTGCCTAGGTTTAAAAAAAATTAACAATCAAGTTATTAAAGATGATACTCCAGCCATCCATGGAATGATTAAAACCATCAGTCATCTTGTTGTAGTTGAAAAAGTTTCTTATACAAAGGAGCAAAAATAA |
| Sequence | MKLKITLTKSLIACRFNQIKTAHCLGLKKINNQVIKDDTPAIHGMIKTISHLVVVEKVSYTKEQK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 16672622 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q2NIX2 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 248
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1445578 | 1445757 | - | NC_022538.1 | Acholeplasma palmae J233 |
| 2 | 456592 | 456768 | + | NZ_LR215048.1 | Acholeplasma axanthum |
| 3 | 278932 | 279111 | + | NC_022549.1 | Acholeplasma brassicae |
| 4 | 92593 | 92766 | + | NC_010163.1 | Acholeplasma laidlawii PG-8A |
| 5 | 1540017 | 1540196 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 6 | 702887 | 703066 | + | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 7 | 138571 | 138753 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 8 | 1827977 | 1828138 | - | NZ_LT906439.1 | Streptococcus merionis |
| 9 | 2954817 | 2954978 | - | NZ_CP045875.1 | Heliorestis convoluta |
| 10 | 114364 | 114525 | + | NZ_LS483343.1 | Streptococcus ferus |
| 11 | 82904 | 83065 | + | NZ_AP018400.1 | Streptococcus ruminantium |
| 12 | 1244016 | 1244201 | + | NC_011653.1 | Thermosipho africanus TCF52B |
| 13 | 878650 | 878811 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 14 | 80057 | 80218 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 15 | 404578 | 404760 | + | NZ_CP006950.1 | Dehalococcoides mccartyi CG4 |
| 16 | 81670 | 81831 | + | NC_012924.1 | Streptococcus suis SC84 |
| 17 | 3295825 | 3296007 | - | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 18 | 94504 | 94665 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 19 | 973834 | 974001 | + | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 20 | 2948690 | 2948857 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 21 | 444137 | 444298 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 22 | 963136 | 963303 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 23 | 701793 | 701960 | + | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 24 | 3510601 | 3510768 | + | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 25 | 1055201 | 1055383 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 26 | 2373058 | 2373237 | - | NZ_CP023434.1 | Suicoccus acidiformans |
| 27 | 1755639 | 1755800 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 28 | 2029754 | 2029915 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 29 | 996951 | 997127 | + | NZ_CP007389.1 | Thermosipho melanesiensis |
| 30 | 1642796 | 1642981 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 31 | 3913288 | 3913470 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 32 | 4075180 | 4075362 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 33 | 3270243 | 3270425 | - | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 34 | 2576757 | 2576930 | - | NZ_CP041091.1 | Nocardioides sambongensis |
| 35 | 2797961 | 2798128 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 36 | 1104896 | 1105081 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 37 | 2251723 | 2251902 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 38 | 4687620 | 4687802 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 39 | 5996273 | 5996455 | + | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 40 | 5622044 | 5622226 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 41 | 6054271 | 6054453 | + | NZ_CP022744.1 | Streptomyces lincolnensis |
| 42 | 5734319 | 5734498 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 43 | 4150750 | 4150929 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 44 | 3627321 | 3627500 | - | NZ_CP033433.1 | Cohnella candidum |
| 45 | 677324 | 677485 | + | NZ_CP043405.1 | Streptococcus ratti |
| 46 | 70939 | 71100 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 47 | 5606261 | 5606443 | + | NZ_CP022685.1 | Streptomyces formicae |
| 48 | 4163394 | 4163576 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 49 | 4289156 | 4289338 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 50 | 4061495 | 4061677 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 51 | 2360532 | 2360717 | + | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 52 | 129483 | 129665 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 53 | 135128 | 135310 | + | NC_011725.1 | Bacillus cereus B4264 |
| 54 | 2944865 | 2945050 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 55 | 852042 | 852203 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 56 | 1006072 | 1006248 | - | NZ_LR215050.1 | Acholeplasma hippikon |
| 57 | 1283058 | 1283231 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 58 | 4753310 | 4753492 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 59 | 1165111 | 1165272 | - | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 60 | 90340 | 90501 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 61 | 2502050 | 2502229 | + | NZ_LN849456.1 | Devriesea agamarum |
| 62 | 4888845 | 4889027 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 63 | 78857 | 79018 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 64 | 635359 | 635556 | + | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 65 | 4984506 | 4984688 | - | NZ_CP040336.1 | Bacillus luti |
| 66 | 134926 | 135108 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 67 | 776672 | 776851 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 68 | 730042 | 730221 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 69 | 796735 | 796914 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 70 | 4903434 | 4903616 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 71 | 78377 | 78538 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 72 | 115504 | 115665 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 73 | 499783 | 499944 | - | NZ_LR134293.1 | Streptococcus canis |
| 74 | 135792 | 135974 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 75 | 63852 | 64013 | + | NZ_LR594050.1 | Streptococcus porcinus |
| 76 | 163978 | 164160 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 77 | 134847 | 135029 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 78 | 5209091 | 5209273 | + | NZ_CP023688.1 | Streptomyces rimosus |
| 79 | 3881868 | 3882050 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 80 | 1286618 | 1286797 | + | NZ_CP027770.1 | Staphylococcus felis |
| 81 | 721936 | 722103 | - | NC_015707.1 | Pseudothermotoga thermarum DSM 5069 |
| 82 | 1479882 | 1480043 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 83 | 498159 | 498320 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 84 | 2458500 | 2458685 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 85 | 4094153 | 4094332 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 86 | 1366348 | 1366530 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 87 | 3688868 | 3689050 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 88 | 4556109 | 4556291 | + | NZ_AP023439.1 | Streptomyces tuirus |
| 89 | 4473828 | 4474010 | + | NZ_CP029043.1 | Streptomyces nigra |
| 90 | 5091407 | 5091589 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 91 | 4771233 | 4771415 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 92 | 3656009 | 3656167 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 93 | 5258637 | 5258819 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 94 | 5453171 | 5453353 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 95 | 3960459 | 3960641 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 96 | 3937013 | 3937195 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 97 | 9173844 | 9174026 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 98 | 6605004 | 6605186 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 99 | 6312428 | 6312610 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 100 | 6070326 | 6070508 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 101 | 899557 | 899739 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 102 | 1412233 | 1412394 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 103 | 73291 | 73452 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 104 | 4303236 | 4303424 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 105 | 3958801 | 3958983 | - | NZ_CP023691.1 | Streptomyces platensis |
| 106 | 2007634 | 2007816 | - | NC_006085.1 | Cutibacterium acnes KPA171202 |
| 107 | 7510057 | 7510239 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 108 | 1853312 | 1853473 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 109 | 1835135 | 1835296 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 110 | 84909 | 85067 | + | NZ_LR134512.1 | Streptococcus agalactiae |
| 111 | 2065163 | 2065345 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 112 | 617658 | 617837 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 113 | 485928 | 486089 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 114 | 1747377 | 1747538 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 115 | 2957 | 3118 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 116 | 300122 | 300283 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 117 | 2694997 | 2695176 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 118 | 1516208 | 1516393 | - | NZ_LT906446.1 | Megamonas hypermegale |
| 119 | 686773 | 686958 | + | NC_007777.1 | Frankia casuarinae |
| 120 | 275396 | 275572 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 121 | 4356282 | 4356464 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 122 | 2814396 | 2814566 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 123 | 3475140 | 3475322 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 124 | 3866403 | 3866585 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 125 | 136607 | 136789 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 126 | 2362741 | 2362929 | + | NZ_CP031092.1 | Salicibibacter kimchii |
| 127 | 1956883 | 1957044 | - | NC_008025.1 | Deinococcus geothermalis DSM 11300 |
| 128 | 777276 | 777461 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 129 | 1032518 | 1032703 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 130 | 1710606 | 1710767 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 131 | 1774964 | 1775125 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 132 | 189046 | 189234 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 133 | 244177 | 244341 | + | NC_008593.1 | Clostridium novyi NT |
| 134 | 852800 | 852958 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 135 | 5681707 | 5681889 | + | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 136 | 2592523 | 2592702 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 137 | 2718408 | 2718587 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 138 | 2697267 | 2697446 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 139 | 387160 | 387339 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 140 | 392334 | 392513 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 141 | 100159 | 100320 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 142 | 2174896 | 2175054 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 143 | 569087 | 569263 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 144 | 2018314 | 2018493 | + | NZ_CP023671.1 | Clostridium septicum |
| 145 | 2309398 | 2309577 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 146 | 2072200 | 2072388 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 147 | 438666 | 438848 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 148 | 2069714 | 2069896 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 149 | 1972433 | 1972612 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 150 | 165037 | 165225 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 151 | 2602841 | 2603020 | - | NZ_LT906444.1 | Listeria welshimeri |
| 152 | 2055351 | 2055530 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 153 | 2432176 | 2432358 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 154 | 2419603 | 2419761 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 155 | 1484151 | 1484312 | - | NZ_CP014334.1 | Fervidobacterium islandicum |
| 156 | 5290675 | 5290851 | - | NZ_CP009288.1 | Paenibacillus durus |
| 157 | 1755707 | 1755895 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 158 | 2983075 | 2983257 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 159 | 222176 | 222334 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 160 | 1343434 | 1343613 | - | NC_015318.1 | Hippea maritima DSM 10411 |
| 161 | 1052258 | 1052437 | - | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 162 | 1908050 | 1908211 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 163 | 253657 | 253836 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 164 | 221509 | 221685 | - | NZ_CP034437.1 | Paenibacillus albus |
| 165 | 228313 | 228504 | + | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 166 | 1757731 | 1757892 | + | NZ_CP013237.1 | Streptococcus mutans |
| 167 | 1777259 | 1777438 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 168 | 971541 | 971720 | - | NZ_CP071376.1 | Clostridium gasigenes |
| 169 | 1515096 | 1515275 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 170 | 716328 | 716507 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 171 | 754667 | 754846 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 172 | 2163785 | 2163964 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 173 | 2265257 | 2265436 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 174 | 1771625 | 1771804 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 175 | 869273 | 869467 | - | NZ_CP060716.1 | Leucobacter denitrificans |
| 176 | 2581613 | 2581795 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 177 | 2117303 | 2117482 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 178 | 74995 | 75174 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 179 | 77697 | 77876 | + | NZ_CP065211.1 | Enterococcus lactis |
| 180 | 3070552 | 3070725 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 181 | 431649 | 431828 | + | NZ_CP014164.1 | Aerococcus viridans |
| 182 | 32989 | 33150 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 183 | 2240329 | 2240508 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 184 | 146889 | 147071 | + | NZ_CP012024.1 | Bacillus smithii |
| 185 | 565649 | 565828 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 186 | 482678 | 482857 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 187 | 1470291 | 1470473 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 188 | 2348032 | 2348202 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 189 | 281413 | 281589 | - | NZ_CP026363.1 | Brevibacillus agri |
| 190 | 5281008 | 5281187 | - | NZ_CP020953.1 | Clostridium drakei |
| 191 | 4643014 | 4643193 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 192 | 1722090 | 1722269 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 193 | 1671633 | 1671815 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 194 | 712614 | 712793 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 195 | 202222 | 202401 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 196 | 3165955 | 3166134 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 197 | 3669844 | 3670023 | - | NZ_CP028842.1 | Clostridium botulinum |
| 198 | 3950970 | 3951149 | - | NZ_CP011663.1 | Clostridium sporogenes |
| 199 | 274990 | 275169 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 200 | 4430638 | 4430817 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 201 | 2593878 | 2594057 | - | NZ_LR134483.1 | Listeria grayi |
| 202 | 3343287 | 3343466 | - | NZ_CP040924.1 | Clostridium thermarum |
| 203 | 186526 | 186702 | - | NZ_CP046314.1 | Gemella morbillorum |
| 204 | 1763148 | 1763327 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 205 | 581987 | 582166 | - | NZ_CP023011.2 | Enterococcus hirae |
| 206 | 241724 | 241903 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 207 | 309793 | 309960 | + | NZ_CP029494.1 | Deinococcus irradiatisoli |
| 208 | 2795200 | 2795373 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 209 | 1193576 | 1193752 | - | NZ_CP021904.1 | Alkalitalea saponilacus |
| 210 | 5082837 | 5083016 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 211 | 155208 | 155390 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 212 | 236019 | 236207 | - | NC_018178.1 | Melioribacter roseus P3M-2 |
| 213 | 2966411 | 2966584 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 214 | 3615911 | 3616093 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 215 | 2148594 | 2148773 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 216 | 77387 | 77566 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 217 | 3080005 | 3080166 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 218 | 261205 | 261375 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 219 | 2216852 | 2217010 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 220 | 199265 | 199444 | + | NZ_CP043998.1 | Clostridium diolis |
| 221 | 2426065 | 2426244 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 222 | 644800 | 644979 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 223 | 1973321 | 1973500 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 224 | 394523 | 394702 | + | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 225 | 1662620 | 1662799 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 226 | 750939 | 751097 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 227 | 312512 | 312691 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 228 | 2873024 | 2873182 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 229 | 481339 | 481518 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 230 | 240417 | 240596 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 231 | 510500 | 510679 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 232 | 1754743 | 1754919 | - | NZ_LR134484.1 | Gemella haemolysans |
| 233 | 3529796 | 3529975 | - | NZ_CP030775.1 | Clostridium butyricum |
| 234 | 2300503 | 2300682 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 235 | 3979808 | 3979987 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 236 | 840660 | 840839 | + | NZ_CP030848.1 | Sphingobacterium hotanense |
| 237 | 2741311 | 2741493 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 238 | 2366538 | 2366714 | - | NC_018664.1 | Gottschalkia acidurici 9a |
| 239 | 274908 | 275066 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 240 | 407156 | 407335 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 241 | 6309284 | 6309460 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 242 | 4226396 | 4226572 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 243 | 4362283 | 4362456 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 244 | 3550944 | 3551123 | - | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 245 | 287274 | 287453 | + | NZ_CP014204.2 | Clostridium baratii |
| 246 | 1621222 | 1621404 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 247 | 770131 | 770289 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 248 | 1995564 | 1995740 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_022538.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01176.21 | 0.77 | 192 | 2886.5 | same-strand | Translation initiation factor 1A / IF-1 |
| 2 | PF00406.24 | 0.93 | 230 | 1859.0 | same-strand | Adenylate kinase |
| 3 | PF13207.8 | 0.93 | 230 | 1859.0 | same-strand | AAA domain |
| 4 | PF05191.16 | 0.74 | 183 | 1830 | same-strand | Adenylate kinase, active site lid |
| 5 | PF13238.8 | 0.65 | 161 | 1891 | same-strand | AAA domain |
| 6 | PF13671.8 | 0.72 | 178 | 1945.5 | same-strand | AAA domain |
| 7 | PF00344.22 | 0.98 | 244 | 482.0 | same-strand | SecY |
| 8 | PF00828.21 | 0.99 | 246 | 23.0 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 9 | PF00333.22 | 1.0 | 248 | 14.0 | same-strand | Ribosomal protein S5, N-terminal domain |
| 10 | PF03719.17 | 1.0 | 248 | 14.0 | same-strand | Ribosomal protein S5, C-terminal domain |
| 11 | PF00861.24 | 1.0 | 248 | 547.0 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 12 | PF00347.25 | 1.0 | 248 | 965.0 | same-strand | Ribosomal protein L6 |
| 13 | PF00410.21 | 1.0 | 248 | 1557.0 | same-strand | Ribosomal protein S8 |
| 14 | PF00253.23 | 0.89 | 220 | 1989.0 | same-strand | Ribosomal protein S14p/S29e |
++ More..