Result : Q2N9C0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S17 |
| NCBI Accession ID | CP000157.1 |
| Organism | Erythrobacter litoralis (strain HTCC2594) |
| Left | 1680122 |
| Right | 1680424 |
| Strand | - |
| Nucleotide Sequence | ATGCCGAAACGTATCCTGATCGGGACTGTCACCTCCGACAAGACCGACAAGACCGTGACCGTGCTGGTCGAACGCAAGGTGAAGCACCCGCTCTACGGGAAGATCATCCGTCGTTCGAAGAAGTATCACGCTCACGACGAGAAGAACGAATACACGCTGGGCGACGTCGTCCGCATCGAAGAGACCAAGCCGATCTCGAAGACGAAAACCTGGGCCGTGAAAGACCGCGTCGTTGCGGGCGGAACGCAGGCGATCGAGGCGGATCTCGATGTGGCCGAAGCCACCCCCGGTGGTGCCGAGTAA |
| Sequence | MPKRILIGTVTSDKTDKTVTVLVERKVKHPLYGKIIRRSKKYHAHDEKNEYTLGDVVRIEETKPISKTKTWAVKDRVVAGGTQAIEADLDVAEATPGGAE |
| Source of smORF | Swiss-Prot |
| Function | One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_01345}. |
| Pubmed ID | 19168610 |
| Domain | CDD:412327 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q2N9C0 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 147
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1238948 | 1239238 | - | NZ_CP037948.1 | Qipengyuania sediminis |
| 2 | 2270238 | 2270528 | - | NZ_CP053921.1 | Erythrobacter mangrovi |
| 3 | 2974013 | 2974303 | - | NZ_CP016033.1 | Erythrobacter neustonensis |
| 4 | 231073 | 231363 | - | NZ_CP024920.1 | Qipengyuania seohaensis |
| 5 | 2194863 | 2195153 | - | NZ_AP019389.1 | Qipengyuania flava |
| 6 | 2422238 | 2422528 | - | NZ_CP031357.1 | Erythrobacter aureus |
| 7 | 1382535 | 1382825 | + | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 8 | 1491629 | 1491919 | - | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 9 | 1267436 | 1267726 | + | NZ_CP017057.1 | Erythrobacter litoralis |
| 10 | 1319493 | 1319783 | + | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 11 | 1463481 | 1463780 | + | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 12 | 1122441 | 1122731 | - | NZ_CP022889.1 | Tsuneonella mangrovi |
| 13 | 532922 | 533212 | + | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 14 | 1324311 | 1324607 | + | NZ_CP016545.1 | Paraurantiacibacter namhicola |
| 15 | 209546 | 209839 | - | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 16 | 3197112 | 3197399 | + | NZ_CP009291.1 | Novosphingobium pentaromativorans US6-1 |
| 17 | 72582 | 72872 | + | NZ_CP011452.2 | Croceibacterium atlanticum |
| 18 | 3451197 | 3451466 | - | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 19 | 1656285 | 1656641 | - | NZ_CP060717.1 | Sphingomonas rhizophila |
| 20 | 2592609 | 2592881 | - | NZ_CP009571.1 | Sphingomonas taxi |
| 21 | 1236576 | 1236848 | - | NZ_CP023705.1 | Sphingomonas melonis |
| 22 | 1303287 | 1303556 | + | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 23 | 4885914 | 4886186 | - | NZ_CP014168.1 | Sphingomonas panacis |
| 24 | 3078284 | 3078553 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 25 | 2399563 | 2399853 | - | NZ_CP060052.1 | Croceicoccus marinus |
| 26 | 3093699 | 3093971 | - | NZ_CP061038.1 | Sphingomonas alpina |
| 27 | 1754322 | 1754603 | - | NZ_CP014681.1 | Kozakia baliensis |
| 28 | 3263653 | 3263913 | + | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 29 | 358474 | 358743 | - | NZ_CP032485.1 | Neokomagataea tanensis |
| 30 | 1060165 | 1060416 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 31 | 411483 | 411755 | - | NZ_CP038141.1 | Swingsia samuiensis |
| 32 | 286539 | 286811 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 33 | 463463 | 463735 | - | NZ_CP068419.1 | Gluconobacter sphaericus |
| 34 | 1195710 | 1195997 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 35 | 1954664 | 1954936 | - | NZ_CP014689.1 | Gluconobacter albidus |
| 36 | 415057 | 415329 | - | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 37 | 1214373 | 1214654 | - | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 38 | 5014878 | 5015150 | - | NC_023018.2 | Pandoraea pnomenusa |
| 39 | 1001842 | 1002102 | + | NZ_CP009727.1 | Burkholderia mallei |
| 40 | 2444239 | 2444520 | - | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 41 | 1720652 | 1720945 | - | NC_015387.1 | Marinithermus hydrothermalis DSM 14884 |
| 42 | 763172 | 763432 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 43 | 4624857 | 4625117 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 44 | 725108 | 725368 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 45 | 2692440 | 2692682 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 46 | 3263114 | 3263371 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 47 | 3176154 | 3176426 | - | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 48 | 1321823 | 1322077 | + | NZ_CP030918.1 | Paracoccus suum |
| 49 | 1573928 | 1574197 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 50 | 2502772 | 2503044 | + | NZ_CP035900.1 | Burkholderia glumae |
| 51 | 161270 | 161542 | - | NZ_LN606600.1 | Acetobacter senegalensis |
| 52 | 1640914 | 1641207 | - | NC_014761.1 | Oceanithermus profundus DSM 14977 |
| 53 | 935761 | 936027 | - | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 54 | 1447471 | 1447740 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 55 | 3687930 | 3688202 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 56 | 924792 | 925046 | + | NZ_CP029353.1 | Azospirillum thermophilum |
| 57 | 1295589 | 1295831 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 58 | 672064 | 672405 | - | NZ_CP041659.1 | Sphingomonas xanthus |
| 59 | 415401 | 415670 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 60 | 1873049 | 1873357 | + | NZ_CP011232.1 | Kosmotoga pacifica |
| 61 | 1586068 | 1586385 | - | NC_006461.1 | Thermus thermophilus HB8 |
| 62 | 413876 | 414193 | + | NZ_CP014141.1 | Thermus parvatiensis |
| 63 | 388455 | 388730 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 64 | 262686 | 263003 | + | NC_019386.1 | Thermus oshimai JL-2 |
| 65 | 643877 | 644128 | - | NZ_CP024422.1 | Paracoccus yeei |
| 66 | 1121277 | 1121528 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 67 | 1445566 | 1445874 | - | NC_017095.1 | Fervidobacterium pennivorans DSM 9078 |
| 68 | 3314128 | 3314373 | - | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 69 | 1487765 | 1488073 | - | NZ_CP014334.1 | Fervidobacterium islandicum |
| 70 | 1813953 | 1814228 | - | NZ_CP026328.2 | Acidithiobacillus caldus |
| 71 | 1156999 | 1157289 | + | NZ_CP010028.1 | Deinococcus radiopugnans |
| 72 | 3253763 | 3254017 | + | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 73 | 1696407 | 1696694 | + | NC_022795.1 | Pseudothermotoga hypogea DSM 11164 = NBRC 106472 |
| 74 | 164835 | 165104 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 75 | 697467 | 697733 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 76 | 324154 | 324471 | + | NZ_CP010822.1 | Thermus aquaticus Y51MC23 |
| 77 | 3588769 | 3589017 | - | NZ_CP040449.1 | Aeromonas simiae |
| 78 | 1430424 | 1430666 | - | NZ_CP064063.1 | Brucella anthropi |
| 79 | 1335722 | 1336039 | + | NZ_CP016312.1 | Thermus brockianus |
| 80 | 6417354 | 6417620 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 81 | 1194494 | 1194736 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 82 | 1195605 | 1195847 | - | NC_004310.3 | Brucella suis 1330 |
| 83 | 1201393 | 1201635 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 84 | 1201920 | 1202162 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 85 | 792169 | 792411 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 86 | 792159 | 792401 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 87 | 1210863 | 1211105 | - | NC_007618.1 | Brucella abortus 2308 |
| 88 | 1510934 | 1511176 | + | NZ_LT605585.1 | Brucella inopinata |
| 89 | 2019075 | 2019332 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 90 | 422085 | 422336 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 91 | 1036129 | 1036413 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 92 | 620142 | 620411 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 93 | 1218977 | 1219279 | - | NC_009718.1 | Fervidobacterium nodosum Rt17-B1 |
| 94 | 1132962 | 1133213 | + | NZ_CP029479.1 | Phenylobacterium parvum |
| 95 | 422922 | 423167 | + | NC_015161.1 | Deinococcus proteolyticus MRP |
| 96 | 2950424 | 2950717 | - | NC_014212.1 | Meiothermus silvanus DSM 9946 |
| 97 | 625083 | 625328 | - | NC_011666.1 | Methylocella silvestris BL2 |
| 98 | 4254162 | 4254407 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 99 | 2737241 | 2737504 | - | NC_017790.1 | Deinococcus gobiensis I-0 |
| 100 | 2397807 | 2398055 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 101 | 5602776 | 5603039 | - | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
| 102 | 2623129 | 2623392 | + | NZ_CP060711.1 | Thermomonas brevis |
| 103 | 1969235 | 1969498 | + | NZ_CP015367.1 | Methylobacterium phyllosphaerae |
| 104 | 2681830 | 2682093 | + | NZ_CP003811.1 | Methylobacterium oryzae CBMB20 |
| 105 | 297225 | 297500 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 106 | 4197906 | 4198175 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 107 | 521266 | 521535 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 108 | 2868747 | 2869016 | - | NZ_CP029843.1 | Lysobacter maris |
| 109 | 2269684 | 2269953 | + | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
| 110 | 336532 | 336795 | + | NZ_CP029556.1 | Lysobacter oculi |
| 111 | 993272 | 993571 | + | NZ_CP007389.1 | Thermosipho melanesiensis |
| 112 | 1159775 | 1160050 | + | NZ_AP018712.1 | Tepiditoga spiralis |
| 113 | 1603939 | 1604196 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 114 | 2001572 | 2001829 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 115 | 1899149 | 1899430 | + | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 116 | 1240344 | 1240643 | + | NC_011653.1 | Thermosipho africanus TCF52B |
| 117 | 2685709 | 2685951 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
| 118 | 2993259 | 2993525 | + | NZ_CP048711.1 | Kineobactrum salinum |
| 119 | 2429243 | 2429503 | - | NZ_AP017372.2 | Halorhodospira halochloris |
| 120 | 924633 | 924902 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 121 | 2360391 | 2360654 | + | NC_010505.1 | Methylobacterium radiotolerans JCM 2831 |
| 122 | 1859171 | 1859437 | + | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 123 | 877027 | 877296 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 124 | 689267 | 689533 | + | NZ_CP053627.1 | Xylella taiwanensis |
| 125 | 180757 | 181014 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 126 | 183715 | 183972 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 127 | 485500 | 485766 | + | NZ_CP031423.1 | Microbacterium lemovicicum |
| 128 | 486577 | 486822 | + | NZ_CP034044.1 | Mycoplasma struthionis |
| 129 | 3426054 | 3426311 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 130 | 179519 | 179776 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 131 | 3586786 | 3587043 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 132 | 3540664 | 3540921 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 133 | 2069721 | 2069978 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 134 | 954401 | 954646 | - | NZ_CP042997.1 | Aquisphaera giovannonii |
| 135 | 345840 | 346085 | + | NZ_CP040463.1 | Caminibacter mediatlanticus TB-2 |
| 136 | 267163 | 267420 | + | NZ_CP002082.1 | Spiroplasma mirum ATCC 29335 |
| 137 | 293517 | 293774 | + | NZ_CP011855.1 | Spiroplasma atrichopogonis |
| 138 | 1586242 | 1586487 | - | NZ_CP027432.2 | Caminibacter pacificus |
| 139 | 941416 | 941676 | + | NZ_CP067016.1 | Anaerococcus obesiensis |
| 140 | 326115 | 326375 | + | NZ_CP066014.1 | Anaerococcus vaginalis |
| 141 | 2139405 | 2139653 | + | NZ_CP011308.1 | Sulfurovum lithotrophicum |
| 142 | 5438268 | 5438576 | + | NZ_CP036278.1 | Aeoliella mucimassa |
| 143 | 155654 | 155902 | + | NZ_CP063164.1 | Sulfurovum indicum |
| 144 | 310461 | 310718 | + | NZ_CP011856.1 | Spiroplasma eriocheiris |
| 145 | 3031277 | 3031540 | + | NC_014962.1 | Isosphaera pallida ATCC 43644 |
| 146 | 159180 | 159431 | + | NZ_AP022847.1 | Nitrosophilus alvini |
| 147 | 315842 | 316138 | + | NZ_CP030103.1 | Mycoplasma cloacale |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP037948.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00410.21 | 0.88 | 130 | 1668.5 | same-strand | Ribosomal protein S8 |
| 2 | PF00253.23 | 0.87 | 128 | 1339.0 | same-strand | Ribosomal protein S14p/S29e |
| 3 | PF00673.23 | 0.89 | 131 | 743 | same-strand | ribosomal L5P family C-terminus |
| 4 | PF00281.21 | 0.9 | 133 | 743 | same-strand | Ribosomal protein L5 |
| 5 | PF17136.6 | 0.87 | 128 | 425.5 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 6 | PF00467.31 | 0.78 | 114 | 407.5 | same-strand | KOW motif |
| 7 | PF00238.21 | 0.9 | 133 | 35 | same-strand | Ribosomal protein L14p/L23e |
| 8 | PF00831.25 | 1.0 | 147 | 11 | same-strand | Ribosomal L29 protein |
| 9 | PF00252.20 | 0.97 | 142 | 214.0 | same-strand | Ribosomal protein L16p/L10e |
| 10 | PF00189.22 | 0.99 | 146 | 664.5 | same-strand | Ribosomal protein S3, C-terminal domain |
| 11 | PF07650.19 | 0.99 | 145 | 664 | same-strand | KH domain |
| 12 | PF00237.21 | 1.0 | 147 | 1373 | same-strand | Ribosomal protein L22p/L17e |
| 13 | PF00203.23 | 0.95 | 140 | 1752.0 | same-strand | Ribosomal protein S19 |
++ More..