Result : Q2JWU5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Photosystem II reaction center protein Ycf12 |
| NCBI Accession ID | CP000239.1 |
| Organism | Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) |
| Left | 557019 |
| Right | 557126 |
| Strand | + |
| Nucleotide Sequence | ATGTTCGGACAGTACGAAGTGTTTGTGCAGTTGCTGCTGTTGGCCTTGATCGTCCTGGCAGGGCCAGCGGTCATTCTGCTGCTTTACCTGCGCGGCGCCGATATGTAG |
| Sequence | MFGQYEVFVQLLLLALIVLAGPAVILLLYLRGADM |
| Source of smORF | Swiss-Prot |
| Function | A core subunit of photosystem II (PSII). {ECO:0000255|HAMAP-Rule:MF_01329}. |
| Pubmed ID | 18059494 |
| Domain | CDD:421560 |
| Functional Category | Others |
| Uniprot ID | Q2JWU5 |
| ORF Length (Amino Acid) | 35 |
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| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1815154 | 1815240 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 2 | 2709991 | 2710080 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 3 | 6078006 | 6078095 | - | NC_019751.1 | Calothrix sp. PCC 6303 |
| 4 | 3270130 | 3270216 | + | NC_014248.1 | 'Nostoc azollae' 0708 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP060822.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03692.17 | 0.75 | 3 | 179 | opposite-strand | Putative zinc- or iron-chelating domain |
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