* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017095.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03313.17
|
0.67
|
2
|
5056.0
|
opposite-strand
|
Serine dehydratase alpha chain
|
2
|
PF02219.19
|
1.0
|
3
|
4100
|
opposite-strand
|
Methylenetetrahydrofolate reductase
|
3
|
PF01837.18
|
1.0
|
3
|
1814
|
opposite-strand
|
Homocysteine biosynthesis enzyme, sulfur-incorporation
|
4
|
PF00037.29
|
1.0
|
3
|
1814
|
opposite-strand
|
4Fe-4S binding domain
|
5
|
PF12838.9
|
1.0
|
3
|
1814
|
opposite-strand
|
4Fe-4S dicluster domain
|
6
|
PF14697.8
|
1.0
|
3
|
1814
|
opposite-strand
|
4Fe-4S dicluster domain
|
7
|
PF13187.8
|
1.0
|
3
|
1814
|
opposite-strand
|
4Fe-4S dicluster domain
|
8
|
PF00696.30
|
1.0
|
3
|
373
|
opposite-strand
|
Amino acid kinase family
|
9
|
PF13840.8
|
1.0
|
3
|
373
|
opposite-strand
|
ACT domain
|
10
|
PF00709.23
|
1.0
|
3
|
51
|
same-strand
|
Adenylosuccinate synthetase
|
11
|
PF01927.18
|
1.0
|
3
|
1301
|
same-strand
|
Mut7-C RNAse domain
|
12
|
PF14385.8
|
1.0
|
3
|
3297
|
same-strand
|
Domain of unknown function (DUF4416)
|
13
|
PF00919.22
|
0.67
|
2
|
3750.0
|
same-strand
|
Uncharacterized protein family UPF0004
|
14
|
PF04055.23
|
0.67
|
2
|
3750.0
|
same-strand
|
Radical SAM superfamily
|
15
|
PF18693.3
|
0.67
|
2
|
3750.0
|
same-strand
|
TRAM domain
|
16
|
PF01938.22
|
0.67
|
2
|
3750.0
|
same-strand
|
TRAM domain
|
17
|
PF14451.8
|
0.67
|
2
|
1307.0
|
same-strand
|
Mut7-C ubiquitin
|
18
|
PF12837.9
|
0.67
|
2
|
1821.0
|
opposite-strand
|
4Fe-4S binding domain
|
++ More..