ProsmORF-pred
Result : A7HLU0
Protein Information
Information Type Description
Protein name 50S ribosomal protein L28
NCBI Accession ID CP000771.1
Organism Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)
Left 1121643
Right 1121864
Strand +
Nucleotide Sequence ATGGCAAAATGTGAAATATGCGGAAAAGAACCAAGAGCTGGTAAAAACGTTAGCCACTCAAACAGACATACAAACAGATGGTTTAAGCCAAATGTTCAAAAAGTAAGGGTTCTTCTCGACGATGGAACAGTTAAAAGAATGAATGTCTGTACCAGCTGTTTAAAAGCAGGAAAAGTTAGAAGATACGTAAGCAAATCACAATCCGTAGCATTGGAGGCATAA
Sequence MAKCEICGKEPRAGKNVSHSNRHTNRWFKPNVQKVRVLLDDGTVKRMNVCTSCLKAGKVRRYVSKSQSVALEA
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pubmed ID
Domain CDD:412338
Functional Category Ribosomal_protein
Uniprot ID A7HLU0
ORF Length (Amino Acid) 73
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 450
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1121643 1121864 + NC_009718.1 Fervidobacterium nodosum Rt17-B1
2 1345495 1345716 - NZ_CP014334.1 Fervidobacterium islandicum
3 1316013 1316234 - NC_017095.1 Fervidobacterium pennivorans DSM 9078
4 1323867 1324076 - NC_011653.1 Thermosipho africanus TCF52B
5 1055884 1056096 - NZ_CP007389.1 Thermosipho melanesiensis
6 430164 430376 - NC_011978.1 Thermotoga neapolitana DSM 4359
7 680094 680306 - NC_023151.1 Thermotoga maritima MSB8
8 678002 678214 - NC_009486.1 Thermotoga petrophila RKU-1
9 2009884 2010084 - NZ_AP014510.1 Thermotoga profunda AZM34c06
10 916606 916818 + NC_013642.1 Thermotoga naphthophila RKU-10
11 1723106 1723303 + NC_009828.1 Pseudothermotoga lettingae TMO
12 1758161 1758358 + NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921
13 1894211 1894405 + NC_016751.1 Marinitoga piezophila KA3
14 388766 388966 + NZ_AP014509.1 Thermotoga caldifontis AZM44c09
15 333615 333815 + NC_015707.1 Pseudothermotoga thermarum DSM 5069
16 591229 591420 + NZ_CP011232.1 Kosmotoga pacifica
17 242257 242454 - NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178
18 1411440 1411637 + NC_015682.1 Thermodesulfobacterium geofontis OPF15
19 1789531 1789722 - NC_012785.1 Kosmotoga olearia TBF 19.5.1
20 756705 756896 - NZ_CP048877.1 Thermosulfuriphilus ammonigenes
21 575850 576047 + NZ_AP014945.1 Caldimicrobium thiodismutans
22 614068 614265 - NC_015681.1 Thermodesulfatator indicus DSM 15286
23 2259177 2259371 + NZ_AP017470.1 Thermotomaculum hydrothermale
24 50396 50605 + NC_000918.1 Aquifex aeolicus VF5
25 1191438 1191632 - NZ_LT906453.1 Dermatophilus congolensis
26 1617456 1617647 - NZ_AP019004.1 Phascolarctobacterium faecium
27 859016 859201 + NC_009664.2 Kineococcus radiotolerans SRS30216 = ATCC BAA-149
28 1435147 1435338 + NZ_CP012117.1 Dermabacter vaginalis
29 2263333 2263524 - NZ_AP017900.1 Nocardia seriolae
30 457448 457639 + NC_017934.1 Mesotoga prima MesG1.Ag.4.2
31 2018129 2018320 + NC_010003.1 Petrotoga mobilis SJ95
32 1381423 1381617 + NZ_CP044548.2 Janibacter melonis
33 8842384 8842575 - NZ_CP022088.2 Nocardia brasiliensis
34 1853467 1853649 - NZ_LR134363.1 Actinomyces slackii
35 786207 786398 - NZ_LT821227.1 Phoenicibacter congonensis
36 2591419 2591607 + NC_014830.1 Intrasporangium calvum DSM 43043
37 2055588 2055770 - NC_013235.1 Nakamurella multipartita DSM 44233
38 923699 923896 - NZ_CP042909.1 Thermosulfurimonas marina
39 109211 109393 - NZ_LR134350.1 Actinomyces howellii
40 562723 562911 - NC_014720.1 Caldicellulosiruptor kronotskyensis 2002
41 4347103 4347294 + NC_006361.1 Nocardia farcinica IFM 10152
42 49316 49507 - NZ_CP033972.1 Gordonia insulae
43 751718 751909 + NZ_CP007519.1 Trueperella pyogenes
44 3536265 3536450 - NZ_CP014989.1 Serinicoccus hydrothermalis
45 1983036 1983224 + NC_014657.1 Caldicellulosiruptor owensensis OL
46 2132491 2132679 + NC_014392.1 Caldicellulosiruptor obsidiansis OB47
47 2078968 2079156 + NC_015949.1 Caldicellulosiruptor lactoaceticus 6A
48 421990 422178 - NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B
49 2327050 2327238 + NC_012034.1 Caldicellulosiruptor bescii DSM 6725
50 6230737 6230922 - NZ_CP023691.1 Streptomyces platensis
51 2273276 2273467 - NZ_AP023396.1 Nocardia wallacei
52 1928847 1929041 + NZ_LN824141.1 Defluviitoga tunisiensis
53 615129 615317 - NC_014652.1 Caldicellulosiruptor hydrothermalis 108
54 3623828 3624019 - NZ_CP026746.1 Nocardia cyriacigeorgica
55 1195526 1195711 - NZ_CP045737.1 Aeromicrobium yanjiei
56 3520718 3520909 + NZ_CP027793.1 Rhodococcus hoagii
57 4838869 4839060 + NZ_CP041695.1 Nocardia otitidiscaviarum
58 5755575 5755766 + NZ_LR134352.1 Nocardia asteroides
59 4871441 4871632 + NZ_CP018082.1 Nocardia mangyaensis
60 1293914 1294099 - NZ_CP026952.1 Aeromicrobium chenweiae
61 2615176 2615379 + NC_016629.1 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay
62 1017872 1018063 - NZ_CP033325.1 Georgenia faecalis
63 2960011 2960202 + NZ_CP022657.1 Tumebacillus algifaecis
64 1048249 1048431 - NZ_CP025227.1 Actinomyces wuliandei
65 2123651 2123836 + NZ_CP040887.1 Serinicoccus chungangensis
66 6358051 6358236 - NZ_CP020569.1 Streptomyces gilvosporeus
67 2947293 2947475 + NZ_CP014228.1 Actinomyces radicidentis
68 2677062 2677244 + NZ_CP066049.1 Actinomyces naeslundii
69 1631787 1631969 + NZ_CP066060.1 Actinomyces oris
70 431794 431976 - NZ_LR134477.1 Actinomyces viscosus
71 2406116 2406310 - NZ_CP011112.1 Luteipulveratus mongoliensis
72 5736415 5736600 - NZ_CP072931.1 Streptomyces auratus AGR0001
73 1914227 1914418 - NZ_LR134476.1 Trueperella bialowiezensis
74 2323940 2324131 - NZ_LS974202.1 Mesotoga infera
75 1336863 1337051 + NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1
76 446247 446441 - NC_012440.1 Persephonella marina EX-H1
77 2100783 2100968 - NZ_LR134356.1 Mycolicibacterium aurum
78 862305 862496 - NZ_AP019551.1 Athalassotoga saccharophila
79 1104458 1104640 - NZ_CP039292.1 Actinomyces procaprae
80 1044096 1044287 - NZ_CP051884.1 Cellulomonas taurus
81 2441800 2441991 - NZ_CP022208.1 Rhodococcus pyridinivorans
82 2035275 2035466 - NZ_LT906450.1 Rhodococcus rhodochrous
83 2218127 2218312 + NZ_CP023692.1 Streptomyces vinaceus
84 2578313 2578501 + NC_016627.1 Acetivibrio clariflavus DSM 19732
85 3406436 3406627 - NZ_CP021434.1 Tumebacillus avium
86 987576 987767 - NZ_LS483427.1 Arcanobacterium haemolyticum
87 1547799 1547981 + NZ_CP053642.1 Actinomyces marmotae
88 813682 813882 - NZ_CP007028.1 Thermocrinis ruber
89 2959362 2959547 + NZ_CP022744.1 Streptomyces lincolnensis
90 539074 539265 - NC_013740.1 Acidaminococcus fermentans DSM 20731
91 5318046 5318231 + NZ_AP022598.1 Mycolicibacterium parafortuitum
92 1396902 1397087 - NZ_CP030862.1 Streptomyces globosus
93 2937586 2937777 + NC_014158.1 Tsukamurella paurometabola DSM 20162
94 1338874 1339062 + NZ_CP009170.1 Thermoanaerobacter kivui
95 2774949 2775134 + NZ_CP023688.1 Streptomyces rimosus
96 1448639 1448827 + NC_015958.1 Thermoanaerobacter wiegelii Rt8.B1
97 3038123 3038308 + NZ_CP045643.1 Streptomyces fagopyri
98 2594592 2594777 - NZ_AP022570.1 Mycolicibacterium poriferae
99 2530773 2530964 + NZ_CP048813.1 Rhodococcus triatomae
100 3245726 3245917 + NZ_CP019066.1 Tsukamurella tyrosinosolvens
101 9321754 9321933 + NC_013131.1 Catenulispora acidiphila DSM 44928
102 2499514 2499705 - NZ_AP023172.1 Rhodococcus qingshengii
103 4975265 4975456 + NZ_CP015235.1 Rhodococcus fascians D188
104 3019090 3019275 + NC_013929.1 Streptomyces scabiei 87.22
105 2705666 2705851 + NZ_CP011340.1 Streptomyces pristinaespiralis
106 1012236 1012421 - NZ_LR026975.1 Mycolicibacterium hassiacum DSM 44199
107 1342290 1342481 - NZ_CP039291.1 Cellulomonas shaoxiangyii
108 6883911 6884093 + NZ_CP023445.1 Actinosynnema pretiosum
109 7026526 7026708 + NC_013093.1 Actinosynnema mirum DSM 43827
110 694167 694361 - NZ_AP013035.1 Thermosulfidibacter takaii ABI70S6
111 1496860 1497048 + NC_015519.1 Tepidanaerobacter acetatoxydans Re1
112 1017573 1017761 - NC_014377.1 Thermosediminibacter oceani DSM 16646
113 5710884 5711069 - NZ_CP023695.1 Streptomyces alboniger
114 1547520 1547744 + NZ_CP023695.1 Streptomyces alboniger
115 6643681 6643866 - NZ_CP022685.1 Streptomyces formicae
116 3061509 3061694 + NZ_CP023699.1 Streptomyces kanamyceticus
117 1005839 1006033 - NZ_CP013290.1 Janibacter indicus
118 5364040 5364225 - NZ_CP021080.1 Streptomyces pluripotens
119 5841343 5841528 - NZ_CP063374.1 Streptomyces chromofuscus
120 5584811 5584996 - NZ_CP010849.1 Streptomyces cyaneogriseus subsp. noncyanogenus
121 2271767 2271952 + NZ_CP022310.1 Streptomyces calvus
122 2572251 2572436 + NZ_LN831790.1 Streptomyces leeuwenhoekii
123 6015956 6016141 - NC_021985.1 Streptomyces collinus Tu 365
124 2542122 2542307 + NZ_CP026652.1 Streptomyces dengpaensis
125 2815077 2815262 + NZ_CP051006.1 Streptomyces griseofuscus
126 2975924 2976109 + NZ_CP030073.1 Streptomyces cadmiisoli
127 6605788 6605973 - NZ_CP047020.1 Streptomyces broussonetiae
128 3069884 3070069 + NZ_CP023689.1 Streptomyces chartreusis
129 7943860 7944045 + NZ_CP063373.1 Streptomyces ferrugineus
130 7634474 7634659 - NZ_CP045096.1 Streptomyces phaeolivaceus
131 7367716 7367901 - NZ_CP034463.1 Streptomyces aquilus
132 7180840 7181025 - NZ_CP034539.1 Streptomyces cyaneochromogenes
133 2072091 2072282 - NZ_CP029146.1 Rhodococcus ruber
134 2488394 2488579 + NZ_AP022563.1 Mycolicibacterium duvalii
135 6740455 6740640 - NZ_CP023690.1 Streptomyces spectabilis
136 423402 423608 - NZ_CP023690.1 Streptomyces spectabilis
137 2298409 2298594 - NC_008726.1 Mycolicibacterium vanbaalenii PYR-1
138 147158 147352 - NZ_CP014209.1 Isoptericola dokdonensis DS-3
139 6348770 6348955 - NZ_CP071139.1 Streptomyces nojiriensis
140 9572015 9572197 + NZ_CP034550.1 Saccharothrix syringae
141 4362500 4362685 + NZ_AP022560.1 Mycolicibacterium moriokaense
142 2122408 2122599 - NZ_LT996885.1 Dialister massiliensis
143 218864 219064 - NC_017161.1 Hydrogenobacter thermophilus TK-6
144 7932913 7933095 + NC_019673.1 Saccharothrix espanaensis DSM 44229
145 10118302 10118484 + NZ_CP012752.1 Kibdelosporangium phytohabitans
146 1298202 1298393 - NC_013521.1 Sanguibacter keddieii DSM 10542
147 1736874 1737059 - NZ_LR130759.1 Mycobacterium basiliense
148 2119133 2119318 - NZ_CP011491.1 Mycolicibacterium vaccae 95051
149 1495687 1495872 + NC_020990.1 Streptomyces albidoflavus
150 1874723 1874908 + NZ_CP031742.1 Streptomyces koyangensis
151 2473274 2473459 + NZ_AP022586.1 Mycolicibacterium litorale
152 5337367 5337552 + NZ_AP022572.1 Mycobacterium shottsii
153 4492410 4492595 + NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
154 3442294 3442479 - NZ_CP058277.1 Mycobacterium marinum
155 3876227 3876409 + NC_016946.1 Mycobacterium intracellulare ATCC 13950
156 3993753 3993935 + NC_016948.1 Mycobacterium paraintracellulare
157 5192162 5192347 - NZ_CP015866.1 Streptomyces parvulus
158 2770616 2770801 + NZ_AP023440.1 Streptomyces glomeroaurantiacus
159 4482923 4483108 - NZ_CP032229.1 Streptomyces seoulensis
160 5433798 5433983 - NZ_AP023439.1 Streptomyces tuirus
161 5367710 5367895 - NZ_CP029043.1 Streptomyces nigra
162 5649434 5649619 - NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877
163 6199638 6199823 - NZ_CP021978.1 Streptomyces hawaiiensis
164 2738369 2738554 + NZ_CP034687.1 Streptomyces griseoviridis
165 3283164 3283349 + NC_003155.5 Streptomyces avermitilis MA-4680 = NBRC 14893
166 6390075 6390260 - NZ_CP015098.1 Streptomyces qaidamensis
167 6620101 6620286 - NZ_CP023694.1 Streptomyces coeruleorubidus
168 6040630 6040815 - NZ_CP019457.1 Streptomyces lydicus
169 4341626 4341808 - NZ_CP016793.1 Lentzea guizhouensis
170 1321532 1321717 - NZ_AP022605.1 Mycobacterium doricum
171 1552871 1553059 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
172 4721898 4722083 - NZ_CP029254.1 Streptomyces spongiicola
173 4976326 4976511 - NZ_CP029188.1 Streptomyces tirandamycinicus
174 5448150 5448335 - NZ_CP023693.1 Streptomyces cinereoruber
175 6269978 6270163 - NZ_CP059991.1 Streptomyces gardneri
176 2126273 2126464 + NZ_CP036259.1 Sporomusa termitida
177 513114 513299 - NZ_CP033719.1 Propionibacterium acidifaciens
178 4770317 4770502 - NZ_CP054938.1 Streptomyces harbinensis
179 4671955 4672140 - NZ_CP009922.3 Streptomyces xiamenensis
180 6235206 6235391 - NZ_CP023407.1 Streptomyces fungicidicus
181 114294 114485 + NZ_CP009240.1 Megasphaera elsdenii 14-14
182 2631571 2631762 + NZ_CP045529.1 Luteimicrobium xylanilyticum
183 945454 945636 - NC_013159.1 Saccharomonospora viridis DSM 43017
184 606344 606529 - NZ_AP022601.1 Mycobacterium gallinarum
185 316465 316659 + NZ_AP012333.1 Parascardovia denticolens DSM 10105 = JCM 12538
186 2466617 2466808 + NC_013530.1 Xylanimonas cellulosilytica DSM 15894
187 2582491 2582676 - NZ_LR134442.1 Propionibacterium australiense
188 1884609 1884794 + NZ_CP048882.1 Streptomyces bathyalis
189 1795254 1795445 + NZ_CP048649.1 Aminipila butyrica
190 3440892 3441086 + NZ_AP024310.1 Mycobacterium heckeshornense
191 1792716 1792901 + NZ_AP022608.1 Mycolicibacterium gadium
192 370778 370969 + NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1
193 6137382 6137567 - NZ_CP020563.1 Kitasatospora albolonga
194 518100 518291 + NZ_CP027228.1 Mogibacterium diversum
195 1427337 1427519 - NZ_CP016353.1 Prauserella marina
196 1343580 1343771 + NZ_CP017812.1 Boudabousia tangfeifanii
197 1841838 1842029 - NC_012669.1 Beutenbergia cavernae DSM 12333
198 702846 703037 + NZ_LT635457.1 Actinomyces pacaensis
199 958723 958914 + NZ_CP066065.1 Schaalia meyeri
200 5388546 5388731 - NZ_CP072827.1 Streptomyces mobaraensis NBRC 13819 = DSM 40847
201 2190479 2190664 + NZ_CP044427.1 Ornithinimicrobium pratense
202 1973427 1973612 + NZ_CP034279.1 Streptomyces ficellus
203 5531952 5532137 - NZ_CP029196.1 Streptomyces venezuelae
204 2503137 2503316 - NZ_AP019307.1 Nocardioides baekrokdamisoli
205 2578413 2578604 + NC_014151.1 Cellulomonas flavigena DSM 20109
206 4623009 4623194 + NZ_AP022574.1 Mycolicibacterium psychrotolerans
207 5205514 5205699 - NC_022663.1 Mycobacterium kansasii ATCC 12478
208 2257147 2257338 + NC_015588.1 Isoptericola variabilis 225
209 2325179 2325364 + NZ_CP023701.1 Streptomyces subrutilus
210 831316 831501 + NC_021064.1 Cutibacterium avidum 44067
211 1583709 1583894 - NC_006085.1 Cutibacterium acnes KPA171202
212 1285984 1286178 - NZ_CP062938.1 Bifidobacterium eulemuris
213 6773280 6773465 - NZ_CP070326.1 Streptomyces noursei
214 3249090 3249281 + NZ_CP041694.1 Cellulosimicrobium cellulans
215 1612394 1612576 + NZ_CP066802.1 Actinomyces weissii
216 1280319 1280501 + NZ_LR134357.1 Actinomyces israelii
217 928466 928654 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
218 814677 814862 - NZ_CP019400.1 Acidipropionibacterium acidipropionici
219 390081 390275 + NZ_CP026999.1 Bifidobacterium longum
220 2714694 2714885 + NC_015514.1 Cellulomonas fimi ATCC 484
221 1887446 1887628 - NC_022116.1 Amycolatopsis mediterranei RB
222 2854241 2854426 + NZ_AP022617.1 Mycolicibacterium monacense
223 5889040 5889225 + NZ_CP012150.1 Mycobacterium goodii
224 5649491 5649676 - NZ_CP023703.1 Streptomyces galilaeus
225 3315522 3315707 - NZ_AP022583.1 Mycobacterium noviomagense
226 1372130 1372318 - NZ_CP022413.2 Blautia hansenii DSM 20583
227 5562626 5562817 + NZ_CP022521.1 Actinoalloteichus hoggarensis
228 6074140 6074331 + NZ_CP016076.1 Actinoalloteichus fjordicus
229 4947011 4947196 + NZ_AP022606.1 Mycobacterium branderi
230 426032 426217 - NZ_AP022620.1 Mycolicibacterium anyangense
231 1455360 1455545 + NZ_CP025198.1 Acidipropionibacterium virtanenii
232 764391 764576 - NZ_AP022575.1 Mycobacterium shinjukuense
233 2890123 2890308 + NZ_CP032427.1 Streptomyces griseorubiginosus
234 2048401 2048589 + NZ_CP030280.1 Blautia argi
235 1980973 1981167 - NZ_CP006712.1 Bifidobacterium breve JCM 7017
236 3211686 3211868 + NZ_LR134355.1 Mycolicibacterium chitae
237 3271796 3271981 + NZ_CP017248.1 Streptomyces fodineus
238 1930895 1931080 - NZ_CP016279.1 Streptomyces griseochromogenes
239 1823062 1823247 - NZ_LT906441.1 Cutibacterium granulosum
240 2804784 2804966 + NZ_LT906469.1 Mycolicibacter terrae
241 1412733 1412918 - NZ_CP011883.2 Mycobacterium haemophilum DSM 44634
242 1304751 1304960 + NC_017310.1 Desulfovibrio vulgaris RCH1
243 862714 862902 - NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
244 3122070 3122255 + NZ_AP022581.1 Mycobacterium lacus
245 126608 126793 - NZ_AP022590.1 Mycobacterium mantenii
246 3023357 3023536 + NZ_CP010271.1 Mycobacteroides saopaulense
247 1815603 1815788 + NZ_AP022576.1 Mycobacterium florentinum
248 4069275 4069466 - NZ_AP018449.1 Methylomusa anaerophila
249 3083832 3084020 + NC_014624.2 Eubacterium callanderi
250 1355825 1356013 + NZ_CP029487.1 Eubacterium maltosivorans
251 1004330 1004518 + NZ_AP019367.1 Parolsenella catena
252 1383459 1383650 - NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
253 1862711 1862896 - NZ_AP022561.1 Mycolicibacterium aichiense
254 2420515 2420703 + NZ_CP025197.1 Acetivibrio saccincola
255 2187696 2187881 + NZ_CP040635.1 Acidipropionibacterium jensenii
256 6895842 6896024 + NC_021252.1 Amycolatopsis keratiniphila
257 1774632 1774814 - NZ_CP008953.1 Amycolatopsis japonica
258 6925151 6925333 + NZ_CP016174.1 Amycolatopsis orientalis
259 1521735 1521920 + NZ_AP022616.1 Mycolicibacterium phocaicum
260 2221815 2222000 - NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
261 1590662 1590856 + NZ_CP062948.1 Bifidobacterium lemurum
262 892409 892603 + NC_014011.1 Aminobacterium colombiense DSM 12261
263 2587138 2587323 + NZ_CP023698.1 Streptomyces viridifaciens
264 5729794 5729979 - NC_016109.1 Kitasatospora setae KM-6054
265 1098818 1099012 + NZ_CP036402.1 Egibacter rhizosphaerae
266 505563 505748 + NZ_AP022615.1 Mycobacterium heidelbergense
267 2726838 2727026 + NZ_CP035108.1 Geovibrio thiophilus
268 870984 871172 + NZ_LT635455.1 Olsenella timonensis
269 690718 690903 - NZ_CP034791.1 Caldicellulosiruptor changbaiensis
270 1397278 1397463 - NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
271 721284 721496 + NC_012881.1 Maridesulfovibrio salexigens DSM 2638
272 3238715 3238906 + NC_015564.1 Hoyosella subflava DQS3-9A1
273 1589954 1590139 + NZ_AP022565.1 Mycolicibacterium alvei
274 2406632 2406817 - NZ_CP011269.1 Mycolicibacterium fortuitum
275 5355327 5355512 + NZ_AP022579.1 Mycolicibacterium boenickei
276 3331863 3332048 + NC_000962.3 Mycobacterium tuberculosis H37Rv
277 3391356 3391541 + NC_015848.1 Mycobacterium canettii CIPT 140010059
278 3806698 3806883 - NZ_CP038267.1 Nocardioides euryhalodurans
279 1537606 1537791 - NZ_AP022613.1 Mycobacterium conspicuum
280 687193 687378 - NZ_LR214441.1 Tessaracoccus lapidicaptus
281 2669297 2669485 - NZ_CP039126.1 Blautia producta
282 2550460 2550645 - NZ_LN831039.1 Mycolicibacterium smegmatis
283 922055 922249 + NC_015318.1 Hippea maritima DSM 10411
284 5290158 5290343 - NZ_CP040752.1 Streptomyces rectiverticillatus
285 881924 882109 + NZ_AP022568.1 Mycobacterium simiae
286 5497054 5497248 - NZ_AP022567.1 Mycolicibacterium mageritense
287 2162608 2162796 - NZ_CP019962.1 Eubacterium limosum
288 2172400 2172585 - NZ_CP025546.1 Mycobacterium paragordonae
289 248041 248235 - NZ_AP022603.1 Mycolicibacterium fallax
290 367331 367513 + NZ_AP022589.1 Mycolicibacter minnesotensis
291 1073461 1073655 + NC_016148.1 Thermovirga lienii DSM 17291
292 2234174 2234356 + NZ_AP022609.1 Mycolicibacter hiberniae
293 568340 568528 - NZ_CP070062.1 Coprococcus comes
294 2447280 2447489 - NC_007519.1 Desulfovibrio alaskensis G20
295 5643442 5643627 - NZ_AP022573.1 Mycobacterium saskatchewanense
296 5110611 5110802 + NC_015312.1 Pseudonocardia dioxanivorans CB1190
297 1552813 1553007 + NZ_AP022593.1 Mycolicibacterium arabiense
298 7106900 7107094 + NZ_CP053564.1 Pseudonocardia broussonetiae
299 7894361 7894552 - NZ_CP031142.1 Saccharopolyspora pogona
300 5284298 5284492 - NZ_AP022569.1 Mycobacterium cookii
301 4787539 4787724 + NZ_AP022595.1 Mycolicibacterium sarraceniae
302 1346999 1347187 + NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3
303 1325187 1325375 + NC_013921.1 Thermoanaerobacter italicus Ab9
304 4224114 4224296 + NZ_CP015163.1 Amycolatopsis albispora
305 418141 418326 - NZ_AP022582.1 Mycobacterium seoulense
306 3722961 3723146 + NZ_CP023147.1 Mycobacterium marseillense
307 2577193 2577378 + NZ_AP022614.1 Mycobacterium parmense
308 2157324 2157515 + NZ_CP009687.1 Clostridium aceticum
309 5781544 5781729 - NZ_AP022619.1 Mycobacterium paraseoulense
310 191427 191615 - NZ_LT990039.1 Massilistercora timonensis
311 3636435 3636620 + NZ_CP009360.4 Mycobacterium avium subsp. hominissuis
312 1311653 1311841 + NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
313 4551528 4551713 - NZ_AP022596.1 Mycolicibacterium helvum
314 3096179 3096358 + NZ_CP024633.1 Mycobacteroides salmoniphilum
315 5601419 5601604 - NZ_AP022577.1 Mycolicibacterium aubagnense
316 617399 617605 + NZ_CP026538.1 Desulfovibrio carbinolicus
317 4515650 4515856 - NC_012796.1 Desulfovibrio magneticus RS-1
318 3111663 3111851 - NZ_CP036170.1 [Clostridium] scindens ATCC 35704
319 3228222 3228401 + NZ_AP018165.1 [Mycobacterium] stephanolepidis
320 3289403 3289582 + NZ_CP007220.1 Mycobacteroides chelonae CCUG 47445
321 3326846 3327025 + NZ_CP014955.1 Mycobacteroides abscessus
322 3525223 3525402 + NZ_CP011530.1 Mycobacteroides immunogenum
323 2213134 2213319 - NZ_AP022610.1 Mycolicibacterium madagascariense
324 2073714 2073908 - NZ_AP022618.1 Mycolicibacterium insubricum
325 2329441 2329632 - NC_015672.1 Flexistipes sinusarabici DSM 4947
326 2928890 2929075 + NZ_CP019607.1 Tessaracoccus flavescens
327 551850 552035 + NZ_CP019606.1 Tessaracoccus aquimaris
328 6692422 6692607 - NZ_CP031455.1 Streptomyces olivoreticuli subsp. olivoreticuli
329 2151783 2151974 + NZ_CP061007.1 Saccharopolyspora spinosa
330 1462501 1462689 + NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
331 1970757 1970948 + NC_014614.1 Acetoanaerobium sticklandii
332 1100951 1101136 - NZ_LT635479.1 Lachnoclostridium phocaeense
333 2359858 2360043 + NZ_CP040058.1 Anaerostipes rhamnosivorans
334 1288816 1289001 - NZ_CP036345.1 Anaerostipes caccae L1-92
335 1394893 1395078 + NZ_LR134406.1 Arachnia propionica
336 1025625 1025834 - NC_020127.1 Lawsonia intracellularis N343
337 1422260 1422448 + NC_018870.1 Thermacetogenium phaeum DSM 12270
338 1799021 1799206 + NC_014387.1 Butyrivibrio proteoclasticus B316
339 5095063 5095248 - NZ_CP041146.1 Nocardioides humi
340 1431356 1431550 - NZ_AP012334.1 Scardovia inopinata JCM 12537
341 3262324 3262509 + NC_014165.1 Thermobispora bispora DSM 43833
342 1691783 1691971 + NZ_CP025286.1 Ethanoligenens harbinense YUAN-3
343 8349745 8349936 + NZ_CP007155.1 Kutzneria albida DSM 43870
344 867304 867495 + NZ_CP029256.1 Christensenella minuta
345 1855573 1855758 - NZ_LT985188.1 Micropruina glycogenica
346 871920 872108 - NZ_CP017237.1 Moorella thermoacetica
347 1093601 1093786 - NZ_CP049257.1 Nocardioides anomalus
348 1548554 1548745 - NZ_CP022752.1 Actinopolyspora erythraea
349 1519730 1519921 - NC_011661.1 Dictyoglomus turgidum DSM 6724
350 1335333 1335524 - NC_011297.1 Dictyoglomus thermophilum H-6-12
351 3760635 3760826 + NZ_CP045929.1 Saccharopolyspora coralli
352 1735618 1735803 - NC_015635.1 Microlunatus phosphovorus NM-1
353 2610135 2610320 - NZ_CP015079.1 Nocardioides dokdonensis FR1436
354 6869919 6870110 + NC_009142.1 Saccharopolyspora erythraea NRRL 2338
355 2237376 2237567 - NC_013947.1 Stackebrandtia nassauensis DSM 44728
356 3427227 3427418 + NZ_LT828648.1 Nitrospira japonica
357 2530059 2530250 + NC_015388.1 Desulfobacca acetoxidans DSM 11109
358 4546196 4546381 + NC_016582.1 Streptomyces bingchenggensis BCW-1
359 911420 911611 - NC_015437.1 Selenomonas sputigena ATCC 35185
360 1892377 1892562 + NZ_AP022587.1 Mycobacterium stomatepiae
361 952517 952696 + NZ_CP018044.1 Bifidobacterium choerinum
362 1969955 1970140 + NZ_CP029543.1 Mycobacterium leprae
363 4807239 4807424 - NZ_CP031264.1 Streptacidiphilus bronchialis
364 1984064 1984249 + NZ_CP023202.1 Streptomyces xinghaiensis S187
365 4714809 4714994 - NC_016111.1 Streptomyces cattleya NRRL 8057 = DSM 46488
366 2406914 2407105 + NZ_CP020559.1 Clostridium formicaceticum
367 2019931 2020116 - NZ_LR027880.1 Roseburia intestinalis L1-82
368 1587682 1587867 - NZ_LR699011.1 Roseburia hominis
369 3628791 3629000 - NZ_CP045504.1 Desulfovibrio sulfodismutans DSM 3696
370 382962 383156 + NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436
371 276297 276482 - NZ_CP044344.1 Nocardioides cynanchi
372 3141693 3141878 - NC_014833.1 Ruminococcus albus 7 = DSM 20455
373 3479529 3479723 - NZ_AP022588.1 Mycolicibacterium sediminis
374 3024976 3025161 - NZ_CP022464.2 Enterocloster bolteae
375 315048 315236 - NC_013939.1 Deferribacter desulfuricans SSM1
376 521886 522074 + NC_013943.1 Denitrovibrio acetiphilus DSM 12809
377 1149930 1150121 - NZ_CP018799.1 Mariprofundus aestuarium
378 1584138 1584323 - NZ_CP060789.1 Tessaracoccus defluvii
379 216857 217042 + NZ_CP038436.1 Nocardioides seonyuensis
380 284912 285091 + NZ_CP022544.1 Bifidobacterium pseudolongum
381 3207985 3208170 + NZ_CP059164.1 Nocardioides ungokensis
382 243308 243502 + NZ_AP012325.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
383 3578334 3578519 + NZ_CP022295.1 Nocardioides aromaticivorans
384 5162815 5163000 - NZ_LR134501.1 Nocardiopsis dassonvillei
385 945982 946176 + NC_013522.1 Thermanaerovibrio acidaminovorans DSM 6589
386 276401 276595 + NZ_CP028341.1 Bifidobacterium adolescentis
387 1919692 1919883 - NZ_CP045875.1 Heliorestis convoluta
388 288471 288665 + NZ_CP025199.1 Bifidobacterium pseudocatenulatum
389 1812845 1813036 + NZ_CP024955.1 Kyrpidia spormannii
390 3437555 3437740 - NZ_CP060713.1 Nocardioides mesophilus
391 2962117 2962305 + NZ_CP014150.1 Paeniclostridium sordellii
392 2325919 2326110 + NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
393 1327923 1328108 - NZ_HF545616.1 Ruminococcus bicirculans
394 1445310 1445501 - NC_014098.1 Kyrpidia tusciae DSM 2912
395 2421690 2421878 + NZ_CP048436.1 Flavonifractor plautii
396 1381880 1382068 - NZ_CP067016.1 Anaerococcus obesiensis
397 766955 767143 - NZ_CP066014.1 Anaerococcus vaginalis
398 3046959 3047150 + NZ_CP042430.1 Baekduia soli
399 1999406 1999591 - NC_015275.1 Cellulosilyticum lentocellum DSM 5427
400 1170899 1171090 - NZ_CP032416.1 Clostridium fermenticellae
401 1355991 1356179 - NZ_CP030777.1 Faecalibacterium prausnitzii
402 1964666 1964854 - NC_016048.1 Oscillibacter valericigenes Sjm18-20
403 1129980 1130171 - NC_014831.1 Thermaerobacter marianensis DSM 12885
404 690538 690723 + NZ_CP027002.1 [Ruminococcus] gnavus ATCC 29149
405 818430 818624 - NC_018024.1 Acetomicrobium mobile DSM 13181
406 2789232 2789423 + NC_009633.1 Alkaliphilus metalliredigens QYMF
407 3928090 3928281 - NC_020126.1 Myxococcus stipitatus DSM 14675
408 2973280 2973468 - NZ_CP034248.1 Paenibacillus lentus
409 4331697 4331885 + NZ_CP034235.1 Paenibacillus psychroresistens
410 5419634 5419825 + NZ_CP012109.1 Myxococcus hansupus
411 325232 325426 + NZ_CP006018.1 Bifidobacterium indicum LMG 11587 = DSM 20214
412 338485 338679 + NZ_CP007287.1 Bifidobacterium coryneforme
413 2111535 2111720 - NC_014376.1 [Clostridium] saccharolyticum WM1
414 2773017 2773208 + NC_019903.1 Desulfitobacterium dichloroeliminans LMG P-21439
415 3290355 3290546 + NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507
416 4078588 4078779 + NC_011830.1 Desulfitobacterium hafniense DCB-2
417 1119591 1119779 + NZ_CP016809.1 Paenibacillus ihbetae
418 1884862 1885056 + NC_006138.1 Desulfotalea psychrophila LSv54
419 2368595 2368786 + NC_015172.1 Syntrophobotulus glycolicus DSM 8271
420 3549639 3549827 - NZ_CP011388.1 Paenibacillus swuensis
421 4855305 4855493 + NZ_CP026520.1 Paenibacillus chitinolyticus
422 1207089 1207277 - NZ_CP013652.1 Paenibacillus naphthalenovorans
423 4420967 4421155 + NZ_CP043611.1 Paenibacillus antarcticus
424 1984797 1984985 + NZ_CP048104.1 Kroppenstedtia pulmonis
425 1675827 1676012 - NZ_LT906483.1 Mycolicibacterium thermoresistibile
426 2198623 2198811 + NZ_CP048103.1 Kroppenstedtia eburnea
427 313436 313624 - NZ_CP014159.1 Aerococcus christensenii
428 1189991 1190179 - NZ_CP039710.1 Thermoactinomyces vulgaris
429 4469698 4469886 - NZ_CP011058.1 Paenibacillus beijingensis
430 941381 941569 - NZ_CP045293.1 Paenibacillus guangzhouensis
431 1130672 1130860 - NZ_AP019308.1 Paenibacillus baekrokdamisoli
432 4826656 4826844 + NZ_CP034437.1 Paenibacillus albus
433 2828002 2828190 - NZ_CP009428.1 Paenibacillus odorifer
434 83760 83948 + NZ_CP045298.1 Paenibacillus brasilensis
435 2162435 2162623 - NZ_CP020028.1 Paenibacillus kribbensis
436 2287804 2287992 + NZ_CP014167.1 Paenibacillus yonginensis
437 5069795 5069983 - NZ_CP048429.1 Paenibacillus jilunlii
438 3140687 3140875 - NZ_CP009287.1 Paenibacillus graminis
439 6062226 6062414 + NZ_CP068595.1 Paenibacillus sonchi
440 3508164 3508352 - NZ_LN831776.1 Paenibacillus riograndensis SBR5
441 3616729 3616917 - NZ_CP009285.1 Paenibacillus borealis
442 2623607 2623795 - NZ_CP009286.1 Paenibacillus stellifer
443 485557 485745 + NZ_CP014161.1 Aerococcus urinae
444 747509 747697 - NZ_CP035492.1 Paenibacillus protaetiae
445 1395175 1395390 - NC_008148.1 Rubrobacter xylanophilus DSM 9941
446 3178094 3178282 - NZ_CP018061.1 Enterococcus mundtii
447 4369059 4369247 + NZ_AP019400.1 Cohnella abietis
448 985089 985274 + NZ_CP029476.1 Lactobacillus apis
449 1139596 1139781 + NZ_CP029544.1 Lactobacillus helsingborgensis
450 1292898 1293083 + NC_021181.2 Lactobacillus acidophilus La-14
451 4258416 4258604 + NZ_CP048209.1 Paenibacillus lycopersici
452 6455081 6455269 - NZ_CP048286.1 Paenibacillus rhizovicinus
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_LT906453.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00270.31 0.79 355 1994 opposite-strand DEAD/DEAH box helicase
2 PF04851.17 0.77 347 1975 opposite-strand Type III restriction enzyme, res subunit
3 PF13684.8 0.65 291 268 opposite-strand Dihydroxyacetone kinase family
4 PF02734.19 0.68 307 269 opposite-strand DAK2 domain
++ More..