ProsmORF-pred
Result : Q2GH47
Protein Information
Information Type Description
Protein name 30S ribosomal protein S17
NCBI Accession ID
Organism Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas)
Left
Right
Strand
Nucleotide Sequence
Sequence MREGKRKNMSNKKVLTGIVVDAKCDKTIKVMVSRMIMHKTYKKIVKKRKNYVVHDEHNQYKCGDVVKIQEHIPISATKRWIVI
Source of smORF Swiss-Prot
Function One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_01345}.
Pubmed ID 16482227
Domain CDD:412327
Functional Category Ribosomal_protein
Uniprot ID Q2GH47
ORF Length (Amino Acid) 83
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Conservation Analysis
Conservation Analysis
No. of Species: 212
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 395006 395257 + NZ_CP007480.1 Ehrlichia chaffeensis str. West Paces
2 784769 784996 - NC_023063.1 Ehrlichia muris AS145
3 858949 859200 - NC_007354.1 Ehrlichia canis str. Jake
4 1012175 1012423 - NZ_CP040111.1 Ehrlichia ruminantium
5 829762 829974 - NC_012026.1 Anaplasma marginale str. Florida
6 805850 806062 - NZ_CP015994.1 Anaplasma ovis str. Haibei
7 409551 409763 + NC_013532.1 Anaplasma centrale str. Israel
8 277495 277710 + NC_021880.1 Anaplasma phagocytophilum str. JM
9 1430424 1430666 - NZ_CP064063.1 Brucella anthropi
10 359304 359531 + NZ_CP029829.1 Azospirillum ramasamyi
11 2692440 2692682 - NZ_LT960614.1 Hartmannibacter diazotrophicus
12 3562415 3562621 - NZ_CP041636.1 Ferrovibrio terrae
13 1446245 1446481 + NZ_FO082820.1 Pseudorhizobium banfieldiae
14 1536355 1536591 + NZ_LR723670.1 Pseudorhizobium flavum
15 2475728 2475955 - NZ_CP054619.1 Azospirillum oryzae
16 1106245 1106481 + NZ_CP034909.1 Ensifer alkalisoli
17 312504 312731 - NZ_CP012401.1 Azospirillum thiophilum
18 2000451 2000678 - NZ_CP022110.1 Nitrospirillum amazonense CBAmc
19 3263144 3263371 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
20 49022 49234 + NC_023065.1 Magnetospirillum gryphiswaldense MSR-1 v2
21 1274515 1274736 + NZ_CP027668.1 Phreatobacter cathodiphilus
22 1194494 1194736 - NC_010103.1 Brucella canis ATCC 23365
23 1195605 1195847 - NC_004310.3 Brucella suis 1330
24 1201393 1201635 - NC_009505.1 Brucella ovis ATCC 25840
25 1201920 1202162 - NC_013119.1 Brucella microti CCM 4915
26 792169 792411 + NC_003317.1 Brucella melitensis bv. 1 str. 16M
27 792159 792401 + NC_022905.1 Brucella ceti TE10759-12
28 1210863 1211105 - NC_007618.1 Brucella abortus 2308
29 1510934 1511176 + NZ_LT605585.1 Brucella inopinata
30 1281083 1281307 - NZ_LR134529.1 Bartonella vinsonii
31 924819 925046 + NZ_CP029353.1 Azospirillum thermophilum
32 1512460 1512672 + NC_017059.1 Pararhodospirillum photometricum DSM 122
33 1150819 1151055 + NZ_CP023067.1 Ensifer sojae CCBAU 05684
34 3391664 3391882 - NZ_CP026538.1 Desulfovibrio carbinolicus
35 1345164 1345382 + NC_012796.1 Desulfovibrio magneticus RS-1
36 5134142 5134390 - NC_020453.1 Bradyrhizobium oligotrophicum S58
37 400800 401024 + NZ_CP030126.1 Indioceanicola profundi
38 6127088 6127312 + NZ_CP044543.1 Bradyrhizobium betae
39 832927 833151 + NZ_CP031843.2 Bartonella kosoyi
40 4198434 4198658 + NZ_CP022221.1 Bradyrhizobium zhanjiangense
41 3194299 3194520 - NZ_CP042906.1 Hypericibacter terrae
42 1512282 1512491 + NZ_CP012946.1 Blastochloris viridis
43 5157929 5158153 + NZ_CP050066.1 Bradyrhizobium symbiodeficiens
44 4056564 4056788 - NZ_CP029426.1 Bradyrhizobium amphicarpaeae
45 2213159 2213383 + NZ_CP058952.1 Chitinibacter fontanus
46 690060 690287 + NC_008783.1 Bartonella bacilliformis KC583
47 716216 716443 + NC_008783.1 Bartonella bacilliformis KC583
48 1194832 1195056 - NZ_CP031844.2 Bartonella krasnovii
49 1602543 1602767 - NC_010161.1 Bartonella tribocorum CIP 105476
50 913907 914137 + NZ_AP019700.1 Stella humosa
51 571072 571281 + NZ_AP019773.1 Bartonella quintana
52 2637132 2637350 + NZ_CP072611.1 Aureimonas populi
53 5723386 5723610 + NZ_CP029425.1 Bradyrhizobium ottawaense
54 1136878 1137102 - NZ_HG965802.1 Bartonella henselae
55 5867351 5867575 - NZ_CP032617.1 Bradyrhizobium diazoefficiens
56 3427311 3427535 + NZ_LS398110.1 Bradyrhizobium vignae
57 3966650 3966874 - NZ_CP022219.1 Bradyrhizobium guangxiense
58 1854801 1855040 - NZ_CP035510.1 Haematobacter massiliensis
59 1292186 1292395 - NZ_LN794217.1 Rickettsia monacensis
60 1911919 1912128 - NZ_AP018907.1 Blastochloris tepida
61 3563515 3563739 - NZ_CP058907.1 Rhodopseudomonas palustris
62 1479598 1479822 - NC_012846.1 Bartonella grahamii as4aup
63 584895 585149 + NC_008344.1 Nitrosomonas eutropha C91
64 1586619 1586858 + NZ_CP006877.1 Rhizobium gallicum bv. gallicum R602sp
65 6281224 6281448 - NZ_CP030050.1 Bradyrhizobium arachidis
66 2408195 2408425 - NC_015186.1 Acidiphilium multivorum AIU301
67 1167747 1167983 + NZ_CP015880.1 Ensifer adhaerens
68 1537207 1537443 + NZ_CP041238.1 Ensifer mexicanus
69 5589823 5590047 - NZ_CP058354.1 Bradyrhizobium japonicum
70 3261079 3261288 - NZ_CP049241.1 Rhizobium pseudoryzae
71 1058859 1059122 - NZ_CP022315.1 Virgibacillus phasianinus
72 1504436 1504672 + NZ_CP013107.1 Sinorhizobium americanum
73 156134 156343 + NZ_CP041666.1 Radiobacillus deserti
74 4885914 4886132 - NZ_CP014168.1 Sphingomonas panacis
75 1308025 1308243 + NZ_CP024199.1 Thalassospira marina
76 507488 507697 + NC_017058.1 Rickettsia australis str. Cutlack
77 1454068 1454280 - NZ_CP054836.1 Oricola thermophila
78 1525907 1526119 + NC_020059.1 Rhizobium tropici CIAT 899
79 863919 864128 - NC_016929.1 Rickettsia canadensis str. CA410
80 1085910 1086116 - NZ_CP053923.1 Defluviicoccus vanus
81 148630 148839 + NC_017668.1 Halobacillus halophilus DSM 2266
82 3933544 3933786 + NZ_CP046052.1 Methylocystis heyeri
83 997324 997533 - NZ_AP019563.1 Rickettsia asiatica
84 1236576 1236794 - NZ_CP023705.1 Sphingomonas melonis
85 152074 152283 + NZ_CP017962.1 Virgibacillus halodenitrificans
86 1291023 1291259 + NZ_CP029451.1 Sinorhizobium fredii CCBAU 25509
87 1308004 1308222 + NZ_CP004388.1 Thalassospira xiamenensis M-5 = DSM 17429
88 2867819 2868028 - NZ_CP049250.1 Rhizobium rhizoryzae
89 2236668 2236877 + NZ_CP014022.1 Staphylococcus lugdunensis
90 929202 929411 - NC_003103.1 Rickettsia conorii str. Malish 7
91 939031 939240 - NC_016639.1 Rickettsia slovaca 13-B
92 945552 945761 - NZ_AP019864.1 Rickettsia heilongjiangensis
93 1903746 1903964 + NZ_CP031555.1 Thalassospira indica
94 908743 908952 - NC_009881.1 Rickettsia akari str. Hartford
95 2574124 2574333 - NZ_CP011361.2 Salimicrobium jeotgali
96 360815 361024 + NZ_CP013481.2 Pandoraea apista
97 250915 251124 + NZ_CP011568.3 Pandoraea thiooxydans
98 5014878 5015087 - NC_023018.2 Pandoraea pnomenusa
99 5488997 5489206 - NZ_CP010310.2 Pandoraea pulmonicola
100 1282959 1283168 + NZ_CP027770.1 Staphylococcus felis
101 3027498 3027722 + NZ_CP030053.1 Bradyrhizobium guangzhouense
102 2511805 2512032 + NC_021991.1 Acetobacter pasteurianus 386B
103 539026 539253 + NZ_CP015164.1 Acetobacter ascendens
104 1016637 1016864 + NZ_CP022374.1 Acetobacter oryzifermentans
105 813257 813466 - NC_017049.1 Rickettsia prowazekii str. Chernikova
106 4716903 4717127 - NZ_CP030051.1 Bradyrhizobium guangdongense
107 1081624 1081848 - NZ_LR134527.1 Bartonella elizabethae
108 2108160 2108414 - NC_014654.1 Halanaerobium hydrogeniformans
109 1081059 1081262 + NC_014313.1 Hyphomicrobium denitrificans ATCC 51888
110 974765 975004 - NC_020300.1 Bartonella australis Aust/NH1
111 886622 886849 + NZ_CP042808.1 Acetobacter oryzoeni
112 175472 175681 + NZ_CP038015.1 Paenisporosarcina antarctica
113 1976064 1976273 - NZ_CP013114.1 Staphylococcus equorum
114 823501 823710 - NC_017066.1 Rickettsia typhi str. TH1527
115 52366 52575 - NZ_CP020772.1 Halobacillus mangrovi
116 1858400 1858609 - NZ_CP041730.1 Chitinimonas arctica
117 185246 185455 + NZ_CP029797.1 Paraliobacillus zengyii
118 205756 205965 - NZ_CP066042.1 Staphylococcus saccharolyticus
119 712670 712879 + NZ_LR134242.1 Staphylococcus warneri
120 1434712 1434921 - NZ_CP007601.1 Staphylococcus capitis subsp. capitis
121 758295 758504 - NC_022737.1 Staphylococcus pasteuri SP1
122 790527 790736 + NZ_AP018587.1 Staphylococcus caprae
123 899913 900122 + NZ_CP018776.1 Staphylococcus condimenti
124 2198013 2198222 - NZ_CP033460.1 Staphylococcus debuckii
125 1725719 1725928 - NZ_LT906464.1 Staphylococcus muscae
126 2268883 2269092 - NZ_LR134304.1 Staphylococcus schweitzeri
127 2313023 2313232 - NC_007795.1 Staphylococcus aureus subsp. aureus NCTC 8325
128 4988167 4988376 - NZ_CP040336.1 Bacillus luti
129 125797 126006 + NC_007530.2 Bacillus anthracis str. 'Ames Ancestor'
130 131240 131449 + NZ_CP064875.1 Bacillus toyonensis
131 131442 131651 + NC_011725.1 Bacillus cereus B4264
132 131161 131370 + NZ_CP032365.1 Bacillus wiedmannii
133 1840924 1841178 - NC_017455.1 Halanaerobium praevalens DSM 2228
134 138099 138308 + NZ_CP011930.1 Herbaspirillum seropedicae
135 155450 155659 + NZ_CP013737.1 Herbaspirillum rubrisubalbicans M1
136 132104 132313 + NZ_CP024109.1 Bacillus cytotoxicus
137 759376 759585 + NZ_CP035288.1 Staphylococcus epidermidis
138 2167409 2167618 - NZ_LT906460.1 Staphylococcus simiae
139 726379 726588 + NZ_LR134089.1 Staphylococcus saprophyticus
140 793071 793280 + NZ_CP008724.1 Staphylococcus xylosus
141 1766779 1766988 - NZ_CP045927.1 Staphylococcus agnetis
142 708953 709162 + NZ_CP008747.1 Staphylococcus hyicus
143 648430 648639 - NZ_CP020773.1 Staphylococcus lutrae
144 134886 135095 + NZ_CP024848.1 Oceanobacillus zhaokaii
145 1976952 1977161 - NC_014925.1 Staphylococcus pseudintermedius HKU10-03
146 329955 330164 + NZ_CP013235.1 Collimonas arenae
147 442350 442559 + NZ_CP013236.1 Collimonas pratensis
148 177371 177580 + NZ_CP037993.1 Herbaspirillum huttiense
149 151152 151361 + NZ_CP009416.1 Jeotgalibacillus malaysiensis
150 716496 716705 + NZ_CP013232.1 Collimonas fungivorans
151 167640 167849 - NZ_CP022437.1 Virgibacillus necropolis
152 247863 248096 + NC_014926.1 Thermovibrio ammonificans HB-1
153 2691336 2691545 + NZ_CP018199.1 Staphylococcus succinus
154 1780887 1781096 - NZ_CP013911.1 Staphylococcus haemolyticus
155 2868789 2868995 - NC_005363.1 Bdellovibrio bacteriovorus HD100
156 2799013 2799222 - NZ_CP029640.1 Paraburkholderia dokdonella
157 2538851 2539060 - NZ_CP013862.1 Lentibacillus amyloliquefaciens
158 1388416 1388625 + NZ_CP021106.3 Nitrosospira lacus
159 2361992 2362201 + NZ_CP019448.1 Simonsiella muelleri ATCC 29453
160 1986980 1987189 + NZ_CP065729.1 Macrococcus caseolyticus
161 444863 445069 + NZ_AP022873.1 Dissulfurispira thermophila
162 4496529 4496738 - NZ_CP006837.1 Lysinibacillus varians
163 247991 248200 + NZ_CP019980.1 Lysinibacillus sphaericus
164 1220345 1220557 - NC_013522.1 Thermanaerovibrio acidaminovorans DSM 6589
165 1055884 1056093 - NZ_CP022096.2 Staphylococcus pettenkoferi
166 151165 151374 + NZ_CP016534.2 Planococcus antarcticus DSM 14505
167 600870 601091 + NZ_CP027792.1 Pulveribacter suum
168 129626 129835 + NC_010556.1 Exiguobacterium sibiricum 255-15
169 143200 143409 + NZ_CP012024.1 Bacillus smithii
170 166639 166848 + NZ_CP016543.2 Planococcus donghaensis
171 146505 146714 + NZ_CP016537.2 Planococcus halocryophilus
172 1616018 1616227 - NZ_CP013661.2 Planococcus kocurii
173 146650 146859 + NZ_CP019401.1 Planococcus faecalis
174 242659 242868 + NZ_CP047361.1 Macrococcus canis
175 124432 124641 + NZ_CP012152.1 Anoxybacillus gonensis
176 282128 282337 - NZ_CP012294.1 Pediococcus damnosus
177 134477 134686 + NZ_CP016540.2 Planococcus versutus
178 4043404 4043613 - NZ_CP016020.1 Bacillus weihaiensis
179 146209 146418 + NC_004193.1 Oceanobacillus iheyensis HTE831
180 1158370 1158579 + NZ_CP027783.1 Tetragenococcus osmophilus
181 1445897 1446133 - NZ_CP020538.1 Sphingobium herbicidovorans
182 648198 648434 + NC_014006.1 Sphingobium japonicum UT26S
183 327324 327533 + NZ_CP054482.1 Macrococcus bohemicus
184 611497 611718 + NZ_CP024645.1 Rhizobacter gummiphilus
185 132527 132736 + NZ_CP019699.1 Novibacillus thermophilus
186 3096054 3096263 - NZ_CP014342.1 Geobacillus subterraneus
187 132493 132702 + NC_006510.1 Geobacillus kaustophilus HTA426
188 2826145 2826354 + NZ_CP061470.1 Geobacillus zalihae
189 140633 140842 - NZ_CP018058.1 Geobacillus thermocatenulatus
190 2263659 2263868 - NZ_CP061472.1 Geobacillus thermoleovorans
191 275359 275583 + NC_022549.1 Acholeplasma brassicae
192 2120932 2121141 - NZ_CP017267.1 Vagococcus teuberi
193 573840 574049 - NZ_CP049740.1 Jeotgalibaca arthritidis
194 140142 140351 + NZ_CP048852.1 Bacillus tequilensis
195 753601 753810 - NZ_CP034465.1 Jeotgalibaca ciconiae
196 1667936 1668145 + NZ_CP049889.1 Jeotgalibaca porci
197 2118238 2118447 + NZ_CP015108.1 Sporosarcina ureae
198 2535285 2535491 - NZ_CP060035.1 Sphingobium fuliginis
199 2132074 2132280 - NZ_AP017655.1 Sphingobium cloacae
200 73712 73921 + NZ_CP039712.1 Vagococcus zengguangii
201 396025 396234 - NZ_CP049886.1 Vagococcus coleopterorum
202 1496214 1496420 - NC_009511.1 Sphingomonas wittichii RW1
203 1473955 1474164 - NZ_CP019728.1 Jeotgalibaca dankookensis
204 204857 205066 + NZ_CP060720.1 Vagococcus carniphilus
205 1324215 1324457 - NC_004432.1 Mycoplasma penetrans HF-2
206 1673969 1674172 + NZ_CP023449.1 Rhizorhabdus dicambivorans
207 1137405 1137614 + NZ_CP049887.1 Vagococcus hydrophili
208 1009701 1009964 - NZ_LR215050.1 Acholeplasma hippikon
209 3394472 3394681 + NC_019693.1 Oscillatoria acuminata PCC 6304
210 4311212 4311424 - NZ_CP006644.1 Sphingomonas sanxanigenens DSM 19645 = NX02
211 1080645 1080848 + NZ_CP018099.1 Caldithrix abyssi DSM 13497
212 237419 237622 + NC_016621.1 Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu
213 1051560 1051784 - NC_014970.1 Mycoplasma haemofelis str. Langford 1
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP007480.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00203.23 0.99 209 1777.0 same-strand Ribosomal protein S19
2 PF00237.21 1.0 211 1391.0 same-strand Ribosomal protein L22p/L17e
3 PF00189.22 1.0 212 698 same-strand Ribosomal protein S3, C-terminal domain
4 PF07650.19 0.99 210 698 same-strand KH domain
5 PF00252.20 0.99 210 262 same-strand Ribosomal protein L16p/L10e
6 PF00831.25 1.0 212 55 same-strand Ribosomal L29 protein
7 PF00238.21 0.99 210 49 same-strand Ribosomal protein L14p/L23e
8 PF17136.6 0.98 207 450.0 same-strand Ribosomal proteins 50S L24/mitochondrial 39S L24
9 PF00467.31 0.85 181 448.0 same-strand KOW motif
10 PF00673.23 0.99 209 781 same-strand ribosomal L5P family C-terminus
11 PF00281.21 0.99 210 781 same-strand Ribosomal protein L5
12 PF00253.23 0.98 207 1349 same-strand Ribosomal protein S14p/S29e
13 PF00410.21 0.97 206 1603.0 same-strand Ribosomal protein S8
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