Result : Q2EES1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YniD |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1805165 |
| Right | 1805272 |
| Strand | + |
| Nucleotide Sequence | ATGCCGACTAAACGCTTTGATAAAAAACACTGGAAGATGGTGGTGGTGCTACTGGCAATCTGTGGCGCTATGTTGTTGCTACGTTGGGCAGCAATGATTTGGGGCTGA |
| Sequence | MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 9278503 16738553 19121005 19734316 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | Q2EES1 |
| ORF Length (Amino Acid) | 35 |
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| Conservation Analysis |
No. of Species: 41
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2405016 | 2405123 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 1805165 | 1805272 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1541528 | 1541635 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 2026562 | 2026669 | - | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1737927 | 1738034 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 332800 | 332907 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 7 | 1431527 | 1431634 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 1583097 | 1583204 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 9 | 4385171 | 4385278 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 10 | 1669506 | 1669613 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 2097561 | 2097671 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 12 | 1127059 | 1127166 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 13 | 1922130 | 1922237 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 14 | 1917199 | 1917306 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 15 | 636938 | 637045 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 16 | 1883562 | 1883669 | - | NC_015968.1 | Enterobacter soli |
| 17 | 1857340 | 1857447 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 18 | 3431889 | 3431996 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 19 | 3569076 | 3569183 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 20 | 783982 | 784089 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 21 | 1888868 | 1888975 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 22 | 255838 | 255945 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 23 | 2138491 | 2138598 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 24 | 4814553 | 4814660 | - | NZ_CP033744.1 | Citrobacter freundii |
| 25 | 667163 | 667270 | - | NZ_CP038469.1 | Citrobacter tructae |
| 26 | 2793937 | 2794044 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 27 | 4716095 | 4716202 | - | NZ_CP067057.1 | Rahnella aceris |
| 28 | 3253361 | 3253468 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 29 | 1586687 | 1586794 | - | NZ_CP032487.1 | Yersinia hibernica |
| 30 | 2078369 | 2078476 | - | NZ_CP043727.1 | Yersinia canariae |
| 31 | 2580658 | 2580765 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 32 | 2530400 | 2530507 | + | NZ_CP046293.1 | Yersinia intermedia |
| 33 | 1846444 | 1846551 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 34 | 4400643 | 4400750 | + | NZ_CP007230.1 | Yersinia similis |
| 35 | 885039 | 885143 | + | NZ_CP009787.1 | Yersinia rohdei |
| 36 | 200099 | 200206 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 37 | 3148444 | 3148551 | - | NZ_CP038853.1 | Pantoea vagans |
| 38 | 896725 | 896832 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 39 | 605516 | 605620 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 40 | 3881731 | 3881838 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 41 | 3210167 | 3210274 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 42 | 2196108 | 2196215 | - | NC_015567.1 | Serratia plymuthica AS9 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00707.24 | 0.61 | 25 | 2645.5 | opposite-strand | Translation initiation factor IF-3, C-terminal domain |
| 2 | PF00587.27 | 0.61 | 25 | 513.5 | opposite-strand | tRNA synthetase class II core domain (G, H, P, S and T) |
| 3 | PF03129.22 | 0.61 | 25 | 513.5 | opposite-strand | Anticodon binding domain |
| 4 | PF07973.16 | 0.61 | 25 | 513.5 | opposite-strand | Threonyl and Alanyl tRNA synthetase second additional domain |
| 5 | PF02824.23 | 0.61 | 25 | 513.5 | opposite-strand | TGS domain |
| 6 | PF04338.14 | 0.61 | 25 | 147.0 | opposite-strand | Protein of unknown function, DUF481 |
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