Result : Q24U37
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L32 |
| NCBI Accession ID | AP008230.1 |
| Organism | Desulfitobacterium hafniense (strain Y51) |
| Left | 3035274 |
| Right | 3035453 |
| Strand | - |
| Nucleotide Sequence | ATGGGTGTTGCTCAACATCGCCAATCCAAATCCAGAGTACGTAAACGCCGGGCTATGTGGAAGTTAACTGCACCAAACCACATCGAATGCCCCCAATGCCATAAACCAAAAATGCCTCATCATGTTTGCCCAAGCTGCGGTTATTATAAAGCCAAAGAAGTTATTTCCATGGGTGAATAA |
| Sequence | MGVAQHRQSKSRVRKRRAMWKLTAPNHIECPQCHKPKMPHHVCPSCGYYKAKEVISMGE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 16513756 |
| Domain | CDD:415589 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q24U37 |
| ORF Length (Amino Acid) | 59 |
++ More..
| Conservation Analysis |
No. of Species: 185
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3276683 | 3276862 | - | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 2 | 4064257 | 4064436 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 3 | 2312369 | 2312548 | - | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 4 | 2759592 | 2759771 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 5 | 4900608 | 4900787 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 6 | 3905336 | 3905515 | - | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 7 | 3816233 | 3816412 | - | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 8 | 1130103 | 1130282 | + | NZ_CP046996.1 | Dehalobacter restrictus |
| 9 | 2355137 | 2355316 | - | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 10 | 2476313 | 2476498 | - | NZ_CP009240.1 | Megasphaera elsdenii 14-14 |
| 11 | 1900192 | 1900371 | - | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 12 | 608992 | 609177 | - | NZ_CP029462.1 | Megasphaera stantonii |
| 13 | 1372908 | 1373087 | - | NZ_LT906446.1 | Megamonas hypermegale |
| 14 | 1786985 | 1787185 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 15 | 1113778 | 1113951 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 16 | 1052967 | 1053140 | + | NZ_CP016379.1 | Anoxybacter fermentans |
| 17 | 2285039 | 2285215 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 18 | 797570 | 797746 | + | NZ_LT906470.1 | Veillonella rodentium |
| 19 | 1364049 | 1364225 | - | NZ_LR778174.1 | Veillonella parvula |
| 20 | 1252230 | 1252406 | - | NZ_AP022321.1 | Veillonella nakazawae |
| 21 | 1305974 | 1306150 | - | NZ_LR134375.1 | Veillonella dispar |
| 22 | 2904453 | 2904632 | - | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 23 | 1153792 | 1153971 | + | NC_014831.1 | Thermaerobacter marianensis DSM 12885 |
| 24 | 1257525 | 1257704 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 25 | 2162096 | 2162275 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 26 | 2970929 | 2971108 | - | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 27 | 1548425 | 1548607 | - | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 28 | 1901972 | 1902148 | + | NZ_CP036259.1 | Sporomusa termitida |
| 29 | 890727 | 890909 | + | NZ_CP017237.1 | Moorella thermoacetica |
| 30 | 1471418 | 1471594 | - | NZ_CP034791.1 | Caldicellulosiruptor changbaiensis |
| 31 | 1968030 | 1968206 | + | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 32 | 2840264 | 2840440 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 33 | 4250446 | 4250622 | - | NZ_AP018449.1 | Methylomusa anaerophila |
| 34 | 1184675 | 1184857 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 35 | 1418001 | 1418177 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 36 | 964064 | 964240 | + | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 37 | 1483349 | 1483537 | - | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 38 | 695115 | 695303 | + | NZ_CP029256.1 | Christensenella minuta |
| 39 | 1325807 | 1325986 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 40 | 318117 | 318296 | - | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 41 | 1136666 | 1136842 | + | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 42 | 707314 | 707490 | + | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 43 | 1498608 | 1498784 | - | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 44 | 1295284 | 1295460 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 45 | 1614739 | 1614915 | - | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 46 | 1349830 | 1350006 | + | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 47 | 1333899 | 1334081 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 48 | 1312099 | 1312281 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 49 | 1367078 | 1367257 | + | NZ_CP067016.1 | Anaerococcus obesiensis |
| 50 | 752159 | 752338 | + | NZ_CP066014.1 | Anaerococcus vaginalis |
| 51 | 2780422 | 2780598 | - | NZ_CP019870.1 | Clostridioides difficile |
| 52 | 1031502 | 1031684 | + | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 53 | 1127728 | 1127907 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 54 | 1323746 | 1323928 | - | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 55 | 1449538 | 1449714 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 56 | 2951180 | 2951356 | - | NZ_CP014150.1 | Paeniclostridium sordellii |
| 57 | 2175466 | 2175648 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 58 | 1462250 | 1462426 | - | NC_012438.1 | Sulfurihydrogenibium azorense Az-Fu1 |
| 59 | 1393664 | 1393840 | + | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 60 | 4553645 | 4553818 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 61 | 2395242 | 2395424 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 62 | 2873184 | 2873366 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 63 | 1094202 | 1094369 | + | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 64 | 2145973 | 2146155 | - | NZ_CP009687.1 | Clostridium aceticum |
| 65 | 2135682 | 2135864 | - | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 66 | 1421752 | 1421934 | - | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 67 | 1498647 | 1498829 | - | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 68 | 2275113 | 2275295 | - | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 69 | 1435564 | 1435746 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 70 | 1124011 | 1124193 | - | NC_019793.1 | Deinococcus peraridilitoris DSM 19664 |
| 71 | 875628 | 875798 | + | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 72 | 1498932 | 1499114 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 73 | 2412407 | 2412592 | + | NZ_CP039126.1 | Blautia producta |
| 74 | 1332474 | 1332647 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 75 | 1043147 | 1043323 | + | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 76 | 785250 | 785423 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 77 | 4160704 | 4160910 | - | NZ_CP034328.1 | Tabrizicola piscis |
| 78 | 2641561 | 2641740 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 79 | 2790836 | 2791042 | + | NZ_CP019437.1 | Thioclava nitratireducens |
| 80 | 707125 | 707331 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 81 | 1163949 | 1164155 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 82 | 1206868 | 1207050 | - | NZ_LT632322.1 | Murdochiella vaginalis |
| 83 | 1198173 | 1198346 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 84 | 2631019 | 2631225 | + | NZ_CP053562.1 | Thioclava electrotropha |
| 85 | 1591605 | 1591787 | - | NZ_CP034118.1 | Staphylospora marina |
| 86 | 2799146 | 2799319 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 87 | 2065775 | 2065960 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 88 | 1557793 | 1557969 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 89 | 1753959 | 1754144 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 90 | 1512956 | 1513132 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 91 | 2269818 | 2270000 | - | NZ_CP010028.1 | Deinococcus radiopugnans |
| 92 | 1202959 | 1203141 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 93 | 2125539 | 2125712 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 94 | 1360416 | 1360607 | - | NC_013895.2 | Mageeibacillus indolicus UPII9-5 |
| 95 | 1716330 | 1716509 | - | NC_018664.1 | Gottschalkia acidurici 9a |
| 96 | 813582 | 813761 | + | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 97 | 6090049 | 6090222 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 98 | 804911 | 805084 | - | NZ_CP065729.1 | Macrococcus caseolyticus |
| 99 | 913722 | 913895 | + | NZ_CP047361.1 | Macrococcus canis |
| 100 | 985836 | 986009 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 101 | 1269370 | 1269543 | + | NZ_CP012024.1 | Bacillus smithii |
| 102 | 1170976 | 1171155 | + | NZ_CP035130.1 | Gudongella oleilytica |
| 103 | 1269641 | 1269823 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 104 | 1057241 | 1057429 | + | NC_002967.9 | Treponema denticola ATCC 35405 |
| 105 | 1908713 | 1908913 | - | NZ_CP033219.1 | Parasedimentitalea marina |
| 106 | 1414933 | 1415106 | + | NZ_CP040336.1 | Bacillus luti |
| 107 | 3744933 | 3745106 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 108 | 1598936 | 1599109 | + | NZ_CP027770.1 | Staphylococcus felis |
| 109 | 1833992 | 1834174 | + | NZ_CP040924.1 | Clostridium thermarum |
| 110 | 1175304 | 1175486 | + | NZ_CP020953.1 | Clostridium drakei |
| 111 | 3566397 | 3566603 | - | NZ_CP015093.1 | Salipiger abyssi |
| 112 | 1275152 | 1275334 | + | NZ_AP023213.1 | Citrifermentans bremense |
| 113 | 1843396 | 1843578 | + | NZ_CP029494.1 | Deinococcus irradiatisoli |
| 114 | 3955403 | 3955576 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 115 | 4637492 | 4637665 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 116 | 2669166 | 2669339 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 117 | 42176 | 42349 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 118 | 3506843 | 3507016 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 119 | 3948807 | 3948980 | - | NC_011725.1 | Bacillus cereus B4264 |
| 120 | 2777768 | 2777947 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 121 | 3814293 | 3814466 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 122 | 743797 | 743970 | + | NZ_LT906464.1 | Staphylococcus muscae |
| 123 | 4355197 | 4355370 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 124 | 3825035 | 3825208 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 125 | 136577 | 136759 | + | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 126 | 3092726 | 3092908 | - | NZ_CP009933.1 | Clostridium scatologenes |
| 127 | 1074157 | 1074336 | - | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 128 | 2539668 | 2539841 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 129 | 4003695 | 4003868 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 130 | 2608753 | 2608926 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 131 | 3024857 | 3025030 | + | NZ_CP009288.1 | Paenibacillus durus |
| 132 | 3026616 | 3026789 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 133 | 5261909 | 5262082 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 134 | 3355085 | 3355258 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 135 | 5260224 | 5260397 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 136 | 3732024 | 3732197 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 137 | 3847434 | 3847607 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 138 | 2776749 | 2776922 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 139 | 2269010 | 2269198 | - | NC_012483.1 | Acidobacterium capsulatum ATCC 51196 |
| 140 | 2085910 | 2086083 | + | NZ_CP020773.1 | Staphylococcus lutrae |
| 141 | 878822 | 878995 | + | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 142 | 2915979 | 2916164 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 143 | 1588058 | 1588231 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 144 | 1039243 | 1039416 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 145 | 725284 | 725457 | + | NZ_CP045927.1 | Staphylococcus agnetis |
| 146 | 1788692 | 1788865 | - | NZ_CP008747.1 | Staphylococcus hyicus |
| 147 | 770862 | 771068 | + | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 148 | 1133243 | 1133449 | - | NZ_CP016364.1 | Phaeobacter porticola |
| 149 | 3597790 | 3597972 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 150 | 1475489 | 1475668 | + | NZ_CP039543.1 | Desulfovibrio marinus |
| 151 | 2058901 | 2059074 | + | NZ_CP053989.1 | Niallia circulans |
| 152 | 655988 | 656170 | + | NC_014958.1 | Deinococcus maricopensis DSM 21211 |
| 153 | 1988215 | 1988421 | + | NZ_CP034348.1 | Roseovarius faecimaris |
| 154 | 1751670 | 1751852 | + | NC_002939.5 | Geobacter sulfurreducens PCA |
| 155 | 1586935 | 1587129 | + | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 156 | 3615195 | 3615380 | + | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 157 | 1379139 | 1379324 | + | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 158 | 1775742 | 1775924 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 159 | 1150431 | 1150637 | + | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 160 | 2491429 | 2491635 | + | NZ_CP012661.1 | Defluviimonas alba |
| 161 | 1681429 | 1681605 | + | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 162 | 261459 | 261665 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 163 | 2445671 | 2445877 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 164 | 1798827 | 1799009 | + | NC_007517.1 | Geobacter metallireducens GS-15 |
| 165 | 551462 | 551638 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 166 | 137691 | 137873 | + | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 167 | 538130 | 538309 | - | NZ_CP049889.1 | Jeotgalibaca porci |
| 168 | 1314913 | 1315119 | - | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 169 | 883342 | 883521 | + | NZ_LT635455.1 | Olsenella timonensis |
| 170 | 908675 | 908854 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 171 | 1678088 | 1678261 | - | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 172 | 1183646 | 1183828 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 173 | 1144064 | 1144270 | - | NZ_CP025583.1 | Paracoccus jeotgali |
| 174 | 2770334 | 2770540 | + | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 175 | 2404913 | 2405119 | + | NC_020908.1 | Octadecabacter arcticus 238 |
| 176 | 78824 | 79015 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 177 | 2190921 | 2191100 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 178 | 1044416 | 1044598 | + | NZ_LT906477.1 | Clostridium cochlearium |
| 179 | 1723039 | 1723245 | - | NZ_CP034588.1 | Silicimonas algicola |
| 180 | 1817447 | 1817629 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 181 | 2580181 | 2580351 | + | NZ_CP026363.1 | Brevibacillus agri |
| 182 | 2370650 | 2370820 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 183 | 402507 | 402686 | + | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 184 | 32541 | 32723 | + | NZ_HF545617.1 | Ruminococcus bicirculans |
| 185 | 1930634 | 1930813 | + | NZ_CP045875.1 | Heliorestis convoluta |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_018017.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02504.17 | 0.71 | 131 | 699 | same-strand | Fatty acid synthesis protein |
| 2 | PF02620.19 | 0.94 | 174 | 33.0 | same-strand | Large ribosomal RNA subunit accumulation protein YceD |
++ More..