Result : Q21VS7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Citrate lyase acyl carrier protein (Citrate lyase gamma chain) |
| NCBI Accession ID | CP000267.1 |
| Organism | Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens) |
| Left | 2651555 |
| Right | 2651851 |
| Strand | - |
| Nucleotide Sequence | ATGAAAATCATCAAGGAAGCAGTCGCCGGCACGCTGGAATCCAGCGACCTGCTGGTCAAGGTGGCCCCTGGCCTGCCGGATCGGCTTGACATTCACATTCGAAGCGAAGTGATGCGTCAGTTTGGCGCCCATATTCGCGCCGTGATTGACGATACCCTGGGCAAGCTCGGCGTAACAGAAGGTGACGTCACAGTCGAAGACAAAGGCGCCTTGGACTGTGCCATTCGGGCCCGCCTGCAGACAGCCGTCTTGCGCAGTGTCGGAGACGTCAAGATCGAGTGGGAGAAATTGCAATGA |
| Sequence | MKIIKEAVAGTLESSDLLVKVAPGLPDRLDIHIRSEVMRQFGAHIRAVIDDTLGKLGVTEGDVTVEDKGALDCAIRARLQTAVLRSVGDVKIEWEKLQ |
| Source of smORF | Swiss-Prot |
| Function | Covalent carrier of the coenzyme of citrate lyase. {ECO:0000255|HAMAP-Rule:MF_00805}. |
| Pubmed ID | |
| Domain | CDD:414649 |
| Functional Category | Others |
| Uniprot ID | Q21VS7 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 91
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2651555 | 2651851 | - | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 2 | 871410 | 871703 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 3 | 3670515 | 3670805 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 4 | 3895612 | 3895902 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 5 | 2850092 | 2850382 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 6 | 602320 | 602610 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 7 | 2614221 | 2614514 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 8 | 2620598 | 2620888 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 9 | 2337564 | 2337854 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 10 | 1575890 | 1576180 | + | NZ_LT615367.1 | Dickeya aquatica |
| 11 | 2125020 | 2125310 | + | NZ_LT615367.1 | Dickeya aquatica |
| 12 | 2188138 | 2188428 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 13 | 399371 | 399667 | - | NZ_CP029357.1 | Azospirillum thermophilum |
| 14 | 2142898 | 2143188 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 15 | 3316206 | 3316496 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 16 | 2073465 | 2073755 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 17 | 4360233 | 4360523 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 18 | 2713589 | 2713879 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 19 | 521000 | 521290 | - | NZ_CP067057.1 | Rahnella aceris |
| 20 | 1768573 | 1768863 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 21 | 2208885 | 2209175 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 22 | 2066906 | 2067196 | - | NZ_CP065534.1 | Lonsdalea populi |
| 23 | 1781692 | 1781982 | + | NZ_CP025799.1 | Dickeya zeae |
| 24 | 2152334 | 2152624 | + | NZ_CP025799.1 | Dickeya zeae |
| 25 | 4302974 | 4303267 | - | NZ_CP023525.1 | Cedecea neteri |
| 26 | 3819403 | 3819693 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 27 | 1951884 | 1952174 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 28 | 2655765 | 2656055 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 29 | 2140430 | 2140720 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 30 | 4090365 | 4090658 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 31 | 4495232 | 4495525 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 32 | 1336687 | 1336980 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 33 | 7026 | 7319 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 34 | 909510 | 909800 | - | NZ_CP026047.1 | Raoultella planticola |
| 35 | 3910312 | 3910605 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 36 | 4454483 | 4454776 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 37 | 612508 | 612801 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 38 | 3876614 | 3876907 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 39 | 535356 | 535646 | + | NZ_CP009056.1 | Frischella perrara |
| 40 | 2642418 | 2642711 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 41 | 794291 | 794584 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 42 | 2548537 | 2548830 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 43 | 4396316 | 4396609 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 44 | 4463658 | 4463951 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 45 | 2440783 | 2441073 | + | NZ_CP007445.1 | Gilliamella apicola |
| 46 | 3863263 | 3863556 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 47 | 3907270 | 3907563 | - | NC_015968.1 | Enterobacter soli |
| 48 | 3603007 | 3603300 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 49 | 733781 | 734071 | + | NZ_CP041247.1 | Raoultella electrica |
| 50 | 785368 | 785658 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 51 | 2831762 | 2832052 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 52 | 357365 | 357658 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 53 | 4263349 | 4263642 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 54 | 1728326 | 1728619 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 55 | 309366 | 309674 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 56 | 3361267 | 3361560 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 57 | 98991 | 99281 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 58 | 2609425 | 2609718 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 59 | 3780043 | 3780336 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 60 | 3804156 | 3804449 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 61 | 671061 | 671351 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 62 | 1657360 | 1657653 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 63 | 730142 | 730435 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 64 | 4070032 | 4070325 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 65 | 3905680 | 3905973 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 66 | 2417903 | 2418193 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 67 | 4004726 | 4005019 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 68 | 3933202 | 3933495 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 69 | 4856946 | 4857239 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 70 | 4463305 | 4463595 | - | NZ_CP028271.1 | Mixta intestinalis |
| 71 | 778560 | 778853 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 72 | 2168699 | 2168995 | - | NZ_CP009467.1 | Vibrio harveyi |
| 73 | 506281 | 506574 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 74 | 3388819 | 3389115 | - | NZ_LR134531.1 | Pragia fontium |
| 75 | 3046783 | 3047073 | - | NZ_CP050508.1 | Raoultella terrigena |
| 76 | 3092916 | 3093212 | - | NZ_LS483470.1 | Leminorella richardii |
| 77 | 3194845 | 3195141 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 78 | 3614142 | 3614438 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 79 | 604605 | 604901 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 80 | 558808 | 559095 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 81 | 1876239 | 1876526 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 82 | 765258 | 765554 | + | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 83 | 1072382 | 1072669 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 84 | 172918 | 173217 | - | NZ_LT960612.1 | Vibrio tapetis subsp. tapetis |
| 85 | 1912505 | 1912792 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 86 | 4716737 | 4717045 | - | NZ_CP065640.1 | Serratia rubidaea |
| 87 | 2574301 | 2574597 | + | NZ_LN606600.1 | Acetobacter senegalensis |
| 88 | 940443 | 940730 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 89 | 867670 | 867963 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 90 | 1816300 | 1816596 | + | NZ_CP046268.1 | Vibrio spartinae |
| 91 | 846145 | 846441 | - | NC_015578.1 | Treponema primitia ZAS-2 |
| 92 | 770592 | 770879 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 93 | 1477209 | 1477502 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 94 | 293234 | 293530 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 95 | 141345 | 141593 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 96 | 931542 | 931829 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 97 | 977238 | 977525 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 98 | 239403 | 239702 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 99 | 1709098 | 1709391 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 100 | 4275103 | 4275363 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 101 | 4399641 | 4399901 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 102 | 1656740 | 1657009 | - | NC_013943.1 | Denitrovibrio acetiphilus DSM 12809 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP017482.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01874.18 | 0.92 | 84 | 2927 | same-strand | ATP:dephospho-CoA triphosphoribosyl transferase |
| 2 | PF03802.16 | 0.96 | 87 | 2422.5 | same-strand | Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase |
| 3 | PF04223.14 | 0.98 | 89 | 890.0 | same-strand | Citrate lyase, alpha subunit (CitF) |
| 4 | PF03328.16 | 1.0 | 91 | -3.0 | same-strand | HpcH/HpaI aldolase/citrate lyase family |
| 5 | PF08218.13 | 0.95 | 86 | 23 | same-strand | Citrate lyase ligase C-terminal domain |
| 6 | PF00072.26 | 0.69 | 63 | 5268 | opposite-strand | Response regulator receiver domain |
| 7 | PF12431.10 | 0.6 | 55 | 5269.5 | opposite-strand | Transcriptional regulator |
| 8 | PF02518.28 | 0.71 | 65 | 3642.5 | opposite-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 9 | PF17203.6 | 0.63 | 57 | 3643 | opposite-strand | Single cache domain 3 |
| 10 | PF14501.8 | 0.7 | 64 | 3641.5 | opposite-strand | GHKL domain |
| 11 | PF03390.17 | 0.66 | 60 | 1952.0 | same-strand | 2-hydroxycarboxylate transporter family |
| 12 | PF01557.20 | 0.67 | 61 | 1111 | same-strand | Fumarylacetoacetate (FAA) hydrolase family |
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