Result : Q1QX67
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0434 protein Csal_1588 |
| NCBI Accession ID | CP000285.1 |
| Organism | Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) |
| Left | 1808978 |
| Right | 1809193 |
| Strand | + |
| Nucleotide Sequence | ATGGATAAGGAATTGCTGGCGATGCTGGTCTGCCCCCGCTGTCAGGGCAAGCTGAAGTACGACCGCGAACGTGCGGAACTCAAATGCCACTTCGACGGACTGGCGTTTCCCATCGAGGACGAGATTCCGGTGATGCTCGAAGAGCAGGCGCGCCACATGGATGCCGACGAAAAGCTGGGCAAGGCGCCGGGCGAGGCGCGGGATGCCACCTCATGA |
| Sequence | MDKELLAMLVCPRCQGKLKYDRERAELKCHFDGLAFPIEDEIPVMLEEQARHMDADEKLGKAPGEARDATS |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01066. Profile Description: Trm112p-like protein. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C-terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. |
| Pubmed ID | 22675587 |
| Domain | CDD:412721 |
| Functional Category | Others |
| Uniprot ID | Q1QX67 |
| ORF Length (Amino Acid) | 71 |
++ More..
| Conservation Analysis |
No. of Species: 326
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1808978 | 1809193 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 2 | 3097142 | 3097330 | + | NZ_CP048812.1 | Halomonas socia |
| 3 | 1685323 | 1685541 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 4 | 2278947 | 2279156 | - | NZ_CP048602.1 | Halomonas piezotolerans |
| 5 | 4119630 | 4119875 | - | NZ_CP059082.1 | Halomonas titanicae |
| 6 | 2316504 | 2316713 | - | NZ_AP022843.1 | Halomonas hydrothermalis |
| 7 | 2565944 | 2566153 | - | NZ_CP065135.1 | Halomonas venusta |
| 8 | 1727944 | 1728153 | + | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 9 | 1247283 | 1247492 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 10 | 366769 | 366978 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 11 | 1132212 | 1132421 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 12 | 1301209 | 1301418 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 13 | 1998727 | 1998954 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 14 | 1608081 | 1608284 | + | NZ_CP043420.1 | Kushneria phosphatilytica |
| 15 | 2774905 | 2775087 | + | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 16 | 3928860 | 3929060 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 17 | 2329599 | 2329787 | - | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 18 | 3024107 | 3024316 | + | NZ_CP021323.1 | Kushneria konosiri |
| 19 | 1639136 | 1639324 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 20 | 1459678 | 1459857 | + | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 21 | 212429 | 212638 | - | NZ_CP021358.1 | Kushneria marisflavi |
| 22 | 1989175 | 1989363 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 23 | 550594 | 550773 | - | NZ_CP037953.1 | Permianibacter aggregans |
| 24 | 2324944 | 2325129 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 25 | 4014952 | 4015137 | + | NZ_CP048711.1 | Kineobactrum salinum |
| 26 | 3396084 | 3396269 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 27 | 234868 | 235059 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 28 | 1258467 | 1258646 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 29 | 879532 | 879720 | + | NZ_CP017715.1 | Marinobacter salinus |
| 30 | 1933146 | 1933340 | - | NZ_AP014936.1 | Sulfurifustis variabilis |
| 31 | 1367639 | 1367824 | + | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 32 | 835063 | 835245 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 33 | 2655248 | 2655433 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 34 | 2159750 | 2159932 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 35 | 1438398 | 1438583 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 36 | 2464974 | 2465162 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 37 | 1710396 | 1710575 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 38 | 2272103 | 2272291 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 39 | 2905159 | 2905338 | - | NZ_CP053073.1 | Usitatibacter palustris |
| 40 | 2162843 | 2163031 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 41 | 3054873 | 3055058 | - | NZ_CP036422.1 | Halioglobus maricola |
| 42 | 3736596 | 3736802 | + | NZ_CP016171.1 | Bordetella bronchialis |
| 43 | 918763 | 918957 | + | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 44 | 1824283 | 1824465 | + | NZ_LR134494.1 | Serratia quinivorans |
| 45 | 2422907 | 2423095 | + | NZ_CP054626.1 | Cupriavidus gilardii |
| 46 | 1284741 | 1284920 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 47 | 2909846 | 2910031 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 48 | 1973415 | 1973603 | + | NZ_CP020931.1 | Marinobacter salarius |
| 49 | 2049221 | 2049403 | - | NZ_CP065534.1 | Lonsdalea populi |
| 50 | 3878645 | 3878830 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 51 | 2704180 | 2704362 | + | NZ_CP014056.2 | Grimontia hollisae |
| 52 | 3239524 | 3239706 | + | NZ_CP065640.1 | Serratia rubidaea |
| 53 | 2500678 | 2500866 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 54 | 818496 | 818678 | + | NZ_CP028271.1 | Mixta intestinalis |
| 55 | 1857606 | 1857788 | + | NZ_LT906479.1 | Serratia ficaria |
| 56 | 1992799 | 1992981 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 57 | 676934 | 677122 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 58 | 1581584 | 1581766 | + | NZ_CP061511.1 | Mixta calida |
| 59 | 2694344 | 2694526 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 60 | 4249093 | 4249275 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 61 | 39665 | 39847 | - | NZ_CP019706.1 | Pantoea alhagi |
| 62 | 3296846 | 3297028 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 63 | 2874080 | 2874265 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 64 | 622254 | 622460 | - | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 65 | 993375 | 993557 | + | NZ_AP014857.1 | Escherichia albertii |
| 66 | 3511092 | 3511274 | + | NZ_CP053416.1 | Salmonella bongori |
| 67 | 1829950 | 1830132 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 68 | 2128568 | 2128753 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 69 | 2377260 | 2377445 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 70 | 1470936 | 1471118 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 71 | 954458 | 954640 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 72 | 970673 | 970855 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 73 | 1100316 | 1100498 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 74 | 2363375 | 2363560 | - | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 75 | 2466931 | 2467113 | - | NZ_LR134531.1 | Pragia fontium |
| 76 | 3698744 | 3698923 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 77 | 1468408 | 1468593 | - | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 78 | 1438240 | 1438422 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 79 | 1359553 | 1359735 | + | NZ_AP014879.1 | Sulfuricaulis limicola |
| 80 | 1644571 | 1644753 | + | NZ_LR134340.1 | Escherichia marmotae |
| 81 | 3229988 | 3230170 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 82 | 3861626 | 3861808 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 83 | 1459209 | 1459394 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 84 | 4454523 | 4454708 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 85 | 2092390 | 2092572 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 86 | 1358608 | 1358793 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 87 | 3843485 | 3843667 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 88 | 1795558 | 1795737 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 89 | 895815 | 895997 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 90 | 1438653 | 1438847 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 91 | 3483281 | 3483460 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 92 | 2831379 | 2831561 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 93 | 2391364 | 2391543 | - | NZ_CP011451.1 | Nitrosomonas communis |
| 94 | 1692350 | 1692535 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 95 | 2940473 | 2940664 | - | NC_015572.1 | Methylomonas methanica MC09 |
| 96 | 1659361 | 1659543 | + | NZ_CP026377.1 | Mixta gaviniae |
| 97 | 1532169 | 1532348 | - | NZ_CP035688.1 | Vibrio metoecus |
| 98 | 3057973 | 3058155 | - | NZ_LR134201.1 | Cedecea lapagei |
| 99 | 2161679 | 2161861 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 100 | 1933018 | 1933200 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 101 | 1534941 | 1535123 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 102 | 4853707 | 4853898 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 103 | 1767376 | 1767558 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 104 | 2114748 | 2114933 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 105 | 1317975 | 1318160 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 106 | 3689525 | 3689707 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 107 | 1190240 | 1190422 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 108 | 1874859 | 1875047 | - | NZ_CP040449.1 | Aeromonas simiae |
| 109 | 2221577 | 2221753 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 110 | 3770905 | 3771087 | + | NZ_CP034464.1 | Undibacterium parvum |
| 111 | 987868 | 988044 | + | NZ_LR699114.1 | Aquicella lusitana |
| 112 | 2179059 | 2179238 | + | NZ_CP029736.1 | Providencia rettgeri |
| 113 | 735658 | 735837 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 114 | 1637724 | 1637903 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 115 | 2570145 | 2570327 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 116 | 4015354 | 4015536 | + | NZ_CP011254.1 | Serratia fonticola |
| 117 | 1084715 | 1084897 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 118 | 2228005 | 2228184 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 119 | 1273891 | 1274064 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 120 | 2063621 | 2063803 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 121 | 4478888 | 4479070 | + | NZ_CP033744.1 | Citrobacter freundii |
| 122 | 759747 | 759941 | + | NC_019902.2 | Thioalkalivibrio nitratireducens DSM 14787 |
| 123 | 1875668 | 1875847 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 124 | 2596706 | 2596894 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 125 | 4585412 | 4585612 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 126 | 4540766 | 4540948 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 127 | 1368702 | 1368887 | - | NZ_CP025120.1 | Kangiella profundi |
| 128 | 637239 | 637421 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 129 | 1818515 | 1818697 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 130 | 2207076 | 2207258 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 131 | 1114627 | 1114803 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 132 | 3232088 | 3232270 | - | NZ_CP071320.1 | Serratia ureilytica |
| 133 | 1572681 | 1572860 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 134 | 3001868 | 3002047 | - | NZ_LS483422.1 | Providencia heimbachae |
| 135 | 1124503 | 1124685 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 136 | 3123122 | 3123301 | - | NZ_CP048796.1 | Providencia vermicola |
| 137 | 498832 | 499014 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 138 | 1425384 | 1425566 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 139 | 826828 | 827007 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 140 | 1951264 | 1951443 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 141 | 2167732 | 2167914 | + | NZ_CP025799.1 | Dickeya zeae |
| 142 | 1021517 | 1021696 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 143 | 2630233 | 2630412 | - | NC_013456.1 | Vibrio antiquarius |
| 144 | 1581825 | 1582019 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 145 | 1609691 | 1609882 | - | NZ_CP014646.1 | Thauera humireducens |
| 146 | 1448565 | 1448744 | + | NZ_CP046268.1 | Vibrio spartinae |
| 147 | 3036704 | 3036886 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 148 | 2840408 | 2840590 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 149 | 3412036 | 3412218 | + | NZ_CP007230.1 | Yersinia similis |
| 150 | 3680715 | 3680897 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 151 | 1491421 | 1491600 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 152 | 3360678 | 3360854 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 153 | 1649502 | 1649681 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 154 | 2405932 | 2406108 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 155 | 1294700 | 1294897 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 156 | 2234353 | 2234532 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 157 | 2252294 | 2252473 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 158 | 670261 | 670473 | + | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 159 | 2640630 | 2640812 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 160 | 1806160 | 1806339 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 161 | 3914496 | 3914687 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 162 | 3145006 | 3145188 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 163 | 2117610 | 2117789 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 164 | 843416 | 843595 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 165 | 3702110 | 3702295 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 166 | 3455819 | 3456001 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 167 | 2335920 | 2336111 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 168 | 3407824 | 3408015 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 169 | 1738408 | 1738590 | - | NZ_CP038469.1 | Citrobacter tructae |
| 170 | 1592495 | 1592674 | + | NZ_CP040990.1 | Vibrio furnissii |
| 171 | 2153718 | 2153897 | - | NZ_CP013742.1 | Legionella pneumophila |
| 172 | 2860944 | 2861123 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 173 | 277467 | 277646 | - | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 174 | 2105978 | 2106163 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 175 | 2409652 | 2409840 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 176 | 3669114 | 3669299 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 177 | 3672683 | 3672862 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 178 | 2100241 | 2100423 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 179 | 2604662 | 2604856 | - | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 180 | 44686 | 44868 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 181 | 2976835 | 2977017 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 182 | 993398 | 993577 | + | NZ_CP030788.1 | Vibrio campbellii |
| 183 | 2038292 | 2038471 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 184 | 789562 | 789741 | - | NZ_CP019959.1 | Vibrio owensii |
| 185 | 1279244 | 1279423 | + | NZ_CP009467.1 | Vibrio harveyi |
| 186 | 1178760 | 1178939 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 187 | 2140413 | 2140595 | + | NZ_LT615367.1 | Dickeya aquatica |
| 188 | 1120422 | 1120604 | - | NZ_CP009787.1 | Yersinia rohdei |
| 189 | 1013549 | 1013731 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 190 | 4028641 | 4028823 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 191 | 1824870 | 1825052 | + | NZ_CP043727.1 | Yersinia canariae |
| 192 | 1798554 | 1798736 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 193 | 1301574 | 1301756 | + | NZ_CP032487.1 | Yersinia hibernica |
| 194 | 61897 | 62094 | + | NC_021880.1 | Anaplasma phagocytophilum str. JM |
| 195 | 2921670 | 2921852 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 196 | 2915677 | 2915865 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 197 | 1792280 | 1792459 | - | NZ_LT615228.1 | Polynucleobacter necessarius |
| 198 | 4135224 | 4135406 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 199 | 3190185 | 3190367 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 200 | 1608032 | 1608214 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 201 | 1588817 | 1588999 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 202 | 1571975 | 1572157 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 203 | 958172 | 958354 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 204 | 777128 | 777310 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 205 | 1865081 | 1865263 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 206 | 1805178 | 1805360 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 207 | 3700332 | 3700520 | + | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 208 | 1860069 | 1860248 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 209 | 1885257 | 1885442 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 210 | 2075526 | 2075705 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 211 | 807890 | 808087 | - | NC_011313.1 | Aliivibrio salmonicida LFI1238 |
| 212 | 3013892 | 3014086 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 213 | 6051905 | 6052090 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 214 | 2406974 | 2407156 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 215 | 1576965 | 1577144 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 216 | 1758717 | 1758902 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 217 | 1368076 | 1368261 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 218 | 1962681 | 1962866 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 219 | 2325231 | 2325410 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 220 | 2306836 | 2307015 | - | NZ_AP014635.1 | Vibrio tritonius |
| 221 | 3635726 | 3635911 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 222 | 1782639 | 1782821 | - | NZ_CP051461.1 | Polaromonas vacuolata |
| 223 | 4721338 | 4721523 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 224 | 1019634 | 1019813 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 225 | 772545 | 772730 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 226 | 3015361 | 3015543 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 227 | 1546011 | 1546193 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 228 | 1763003 | 1763188 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 229 | 38682 | 38861 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 230 | 4834860 | 4835045 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 231 | 2348395 | 2348577 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 232 | 1108727 | 1108927 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 233 | 1409374 | 1409556 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 234 | 1847857 | 1848039 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 235 | 1466352 | 1466534 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 236 | 458231 | 458410 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 237 | 278516 | 278695 | - | NZ_CP007501.1 | Polynucleobacter duraquae |
| 238 | 3256265 | 3256444 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 239 | 277324 | 277509 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 240 | 1439956 | 1440141 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 241 | 1572045 | 1572233 | - | NZ_CP029331.1 | Thauera hydrothermalis |
| 242 | 3473583 | 3473768 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 243 | 3592150 | 3592335 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 244 | 3867930 | 3868115 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 245 | 2928416 | 2928598 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 246 | 4824802 | 4824987 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 247 | 1727029 | 1727205 | - | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 248 | 2593547 | 2593726 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 249 | 4270017 | 4270202 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 250 | 99774 | 99956 | - | NZ_LR134418.1 | Legionella adelaidensis |
| 251 | 569816 | 570010 | - | NZ_CP059467.1 | Aromatoleum bremense |
| 252 | 1226173 | 1226349 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 253 | 2597383 | 2597565 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 254 | 2884508 | 2884690 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 255 | 1576900 | 1577085 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 256 | 1699874 | 1700053 | - | NZ_CP033078.1 | Vibrio zhugei |
| 257 | 2075171 | 2075353 | + | NZ_AP019755.1 | Nitrosomonas stercoris |
| 258 | 137772 | 137948 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 259 | 538088 | 538267 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 260 | 1617600 | 1617782 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 261 | 1546603 | 1546785 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 262 | 2488387 | 2488569 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 263 | 562365 | 562547 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 264 | 2338954 | 2339130 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 265 | 651043 | 651228 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 266 | 2428489 | 2428674 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 267 | 3033273 | 3033452 | + | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 268 | 1125411 | 1125590 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 269 | 1684658 | 1684837 | - | NZ_AP019657.1 | Vibrio ponticus |
| 270 | 956284 | 956463 | + | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 271 | 1086282 | 1086461 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 272 | 2044436 | 2044618 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 273 | 1440141 | 1440326 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 274 | 3452916 | 3453098 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 275 | 1816919 | 1817122 | + | NZ_CP015839.1 | Marinobacterium aestuarii |
| 276 | 617420 | 617626 | - | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 277 | 1705030 | 1705215 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 278 | 1180327 | 1180506 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 279 | 943288 | 943467 | + | NZ_LN681225.1 | Legionella hackeliae |
| 280 | 5342303 | 5342488 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 281 | 2234318 | 2234500 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 282 | 320145 | 320327 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 283 | 3077500 | 3077676 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 284 | 1686568 | 1686759 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 285 | 985231 | 985419 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 286 | 2317904 | 2318110 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 287 | 2700781 | 2700963 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 288 | 2271715 | 2271891 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 289 | 1186462 | 1186641 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 290 | 771199 | 771393 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 291 | 320135 | 320314 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 292 | 34940 | 35122 | - | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 293 | 2236303 | 2236485 | - | NC_007947.1 | Methylobacillus flagellatus KT |
| 294 | 2463356 | 2463547 | - | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 295 | 2123652 | 2123831 | - | NZ_LT906451.1 | Legionella lansingensis |
| 296 | 2536480 | 2536689 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 297 | 1984738 | 1984920 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 298 | 1035563 | 1035742 | + | NZ_LN614830.1 | Tatlockia micdadei |
| 299 | 1991051 | 1991233 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 300 | 5676762 | 5676977 | - | NZ_CP042582.1 | Hypericibacter adhaerens |
| 301 | 1359573 | 1359755 | + | NZ_CP065748.1 | Delftia lacustris |
| 302 | 1773426 | 1773617 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 303 | 2635781 | 2635972 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 304 | 856906 | 857088 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 305 | 2341259 | 2341438 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 306 | 1719287 | 1719469 | - | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 307 | 3944947 | 3945135 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 308 | 1158009 | 1158209 | - | NC_018012.1 | Thiocystis violascens DSM 198 |
| 309 | 2310095 | 2310283 | + | NZ_CP027792.1 | Pulveribacter suum |
| 310 | 40744 | 40935 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 311 | 978083 | 978274 | + | NZ_CP072793.1 | Thiothrix unzii |
| 312 | 1319894 | 1320070 | + | NC_017856.1 | Methylophaga frappieri |
| 313 | 1823497 | 1823694 | + | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 314 | 1214440 | 1214616 | + | NZ_CP015994.1 | Anaplasma ovis str. Haibei |
| 315 | 897853 | 898035 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 316 | 1407897 | 1408076 | + | NZ_LT906442.1 | Legionella waltersii |
| 317 | 1475467 | 1475661 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 318 | 664736 | 664915 | + | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 319 | 802160 | 802339 | + | NZ_CP038254.1 | Legionella israelensis |
| 320 | 1273697 | 1273876 | - | NZ_LR134374.1 | Legionella spiritensis |
| 321 | 4657893 | 4658108 | + | NZ_AP019700.1 | Stella humosa |
| 322 | 1837922 | 1838119 | + | NZ_CP041352.1 | Casimicrobium huifangae |
| 323 | 2981516 | 2981698 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 324 | 2731735 | 2731935 | + | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 325 | 1454619 | 1454810 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 326 | 2586537 | 2586731 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 327 | 2402530 | 2402709 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007963.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03772.18 | 0.6 | 196 | 2926 | same-strand | Competence protein |
| 2 | PF02606.16 | 0.86 | 281 | 28.5 | same-strand | Tetraacyldisaccharide-1-P 4'-kinase |
| 3 | PF02348.21 | 0.87 | 282 | -3 | same-strand | Cytidylyltransferase |
++ More..