Result : Q1MIC3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | AM236080.1 |
| Organism | Rhizobium leguminosarum bv. viciae (strain 3841) |
| Left | 1885704 |
| Right | 1885913 |
| Strand | + |
| Nucleotide Sequence | ATGGCCAAGGCTACCAAGAAGGCTGAAGCGAAGACTGTCACGATCGAACAGATCGGCAGCCCGATTCGCCGTCCGGATGTCCAGCAGCGCACGCTGATCGGTCTCGGACTGAACAAGATGCACCGTCGCCGCACGCTGGAGGATACCCCTTCCGTTCGTGGCATGATCCGTGCTGTCCAGCATCTCGTTCGCGTCGTCGACGAGAAGTGA |
| Sequence | MAKATKKAEAKTVTIEQIGSPIRRPDVQQRTLIGLGLNKMHRRRTLEDTPSVRGMIRAVQHLVRVVDEK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 16640791 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q1MIC3 |
| ORF Length (Amino Acid) | 69 |
++ More..
| Conservation Analysis |
No. of Species: 285
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1791184 | 1791393 | + | NZ_CP071604.1 | Rhizobium binae |
| 2 | 1786186 | 1786395 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 3 | 1356608 | 1356817 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 4 | 777783 | 777992 | - | NZ_CP054021.1 | Rhizobium indicum |
| 5 | 2023121 | 2023330 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 6 | 1741887 | 1742096 | + | NZ_CP020906.1 | Rhizobium etli |
| 7 | 1745682 | 1745891 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 8 | 1790197 | 1790406 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 9 | 3622202 | 3622411 | + | NZ_CP071454.1 | Rhizobium lentis |
| 10 | 2624950 | 2625159 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 11 | 1530000 | 1530212 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 12 | 1788632 | 1788844 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 13 | 1926101 | 1926310 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 14 | 1590779 | 1590988 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 15 | 1540473 | 1540682 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 16 | 1450362 | 1450571 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 17 | 1275373 | 1275585 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 18 | 1622750 | 1622956 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 19 | 76732 | 76938 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 20 | 1530682 | 1530888 | - | NZ_CP053856.1 | Rhizobium pusense |
| 21 | 1171823 | 1172026 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 22 | 2863725 | 2863922 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 23 | 1110317 | 1110520 | + | NZ_CP034909.1 | Ensifer alkalisoli |
| 24 | 1508503 | 1508706 | + | NZ_CP013107.1 | Sinorhizobium americanum |
| 25 | 1487668 | 1487871 | + | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 26 | 1154894 | 1155097 | + | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 27 | 1295092 | 1295295 | + | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 28 | 1541282 | 1541485 | + | NZ_CP041238.1 | Ensifer mexicanus |
| 29 | 3256987 | 3257184 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 30 | 4282602 | 4282802 | - | NZ_CP010803.1 | Martelella endophytica |
| 31 | 4249929 | 4250129 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 32 | 2688593 | 2688799 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 33 | 1450196 | 1450396 | - | NZ_CP054836.1 | Oricola thermophila |
| 34 | 1291727 | 1291924 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 35 | 1920675 | 1920875 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 36 | 3303150 | 3303350 | - | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 37 | 4301320 | 4301517 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 38 | 4206565 | 4206762 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 39 | 3188809 | 3189006 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 40 | 4138662 | 4138859 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 41 | 4735896 | 4736093 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 42 | 4777258 | 4777455 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 43 | 218261 | 218458 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 44 | 6054456 | 6054653 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 45 | 4076326 | 4076514 | - | NZ_CP034588.1 | Silicimonas algicola |
| 46 | 1329245 | 1329439 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 47 | 2554920 | 2555120 | + | NZ_CP032509.1 | Georhizobium profundi |
| 48 | 1808589 | 1808777 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 49 | 1715208 | 1715402 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 50 | 1011565 | 1011756 | - | NZ_CP046908.1 | Stappia indica |
| 51 | 1190577 | 1190774 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 52 | 1191688 | 1191885 | - | NC_004310.3 | Brucella suis 1330 |
| 53 | 1197476 | 1197673 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 54 | 1198003 | 1198200 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 55 | 796131 | 796328 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 56 | 796121 | 796318 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 57 | 1206946 | 1207143 | - | NC_007618.1 | Brucella abortus 2308 |
| 58 | 1514896 | 1515093 | + | NZ_LT605585.1 | Brucella inopinata |
| 59 | 1426558 | 1426755 | - | NZ_CP064063.1 | Brucella anthropi |
| 60 | 527981 | 528175 | + | NZ_CP010522.1 | Liberibacter crescens |
| 61 | 377206 | 377394 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 62 | 1021359 | 1021532 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 63 | 1850908 | 1851096 | - | NZ_CP035510.1 | Haematobacter massiliensis |
| 64 | 2641142 | 2641345 | + | NZ_CP072611.1 | Aureimonas populi |
| 65 | 2872321 | 2872521 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 66 | 471671 | 471859 | + | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 67 | 223533 | 223721 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 68 | 1540877 | 1541065 | + | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 69 | 670555 | 670725 | + | NZ_CP004393.1 | Celeribacter indicus |
| 70 | 1132894 | 1133067 | - | NZ_HG965802.1 | Bartonella henselae |
| 71 | 1757474 | 1757662 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 72 | 4443449 | 4443658 | + | NZ_CP016616.1 | Microvirga ossetica |
| 73 | 2815260 | 2815430 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 74 | 3515851 | 3516039 | + | NZ_CP027407.1 | Roseobacter denitrificans |
| 75 | 104299 | 104490 | - | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 76 | 611114 | 611302 | + | NZ_CP048788.1 | Roseobacter ponti |
| 77 | 780873 | 781061 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 78 | 2955440 | 2955646 | + | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 79 | 166493 | 166681 | + | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 80 | 2547209 | 2547397 | - | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 81 | 294427 | 294615 | + | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 82 | 970784 | 970957 | - | NC_020300.1 | Bartonella australis Aust/NH1 |
| 83 | 2374671 | 2374847 | - | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 84 | 3433877 | 3434065 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 85 | 3448840 | 3449028 | + | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 86 | 3919855 | 3920043 | - | NC_020908.1 | Octadecabacter arcticus 238 |
| 87 | 3081648 | 3081818 | + | NZ_CP022196.1 | Celeribacter ethanolicus |
| 88 | 500799 | 500987 | + | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 89 | 405760 | 405930 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 90 | 1525560 | 1525769 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 91 | 951823 | 951996 | + | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 92 | 1849427 | 1849621 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 93 | 3257707 | 3257928 | + | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 94 | 3240606 | 3240794 | - | NZ_CP065915.1 | Pelagovum pacificum |
| 95 | 222419 | 222589 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 96 | 4335302 | 4335490 | - | NC_020911.1 | Octadecabacter antarcticus 307 |
| 97 | 929119 | 929292 | + | NZ_CP034348.1 | Roseovarius faecimaris |
| 98 | 7031823 | 7032008 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 99 | 2461094 | 2461303 | - | NZ_CP045423.1 | Microvirga thermotolerans |
| 100 | 2914182 | 2914370 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 101 | 4092837 | 4093007 | - | NZ_CP029553.1 | Methylobacterium terrae |
| 102 | 1278442 | 1278624 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 103 | 263930 | 264118 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 104 | 1190854 | 1191027 | - | NZ_CP031844.2 | Bartonella krasnovii |
| 105 | 1325755 | 1325940 | + | NZ_CP030918.1 | Paracoccus suum |
| 106 | 3134475 | 3134663 | - | NZ_CP010650.1 | Phaeobacter inhibens |
| 107 | 208400 | 208588 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 108 | 1442085 | 1442273 | - | NZ_CP012023.1 | Celeribacter marinus |
| 109 | 3150459 | 3150644 | + | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 110 | 4180918 | 4181103 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 111 | 431973 | 432161 | + | NZ_CP012661.1 | Defluviimonas alba |
| 112 | 307792 | 307980 | + | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 113 | 262030 | 262218 | + | NZ_CP012160.1 | Octadecabacter temperatus |
| 114 | 1598564 | 1598737 | - | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 115 | 853583 | 853753 | - | NZ_CP015093.1 | Salipiger abyssi |
| 116 | 2915238 | 2915435 | - | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 117 | 2970438 | 2970626 | - | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 118 | 842097 | 842285 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 119 | 1077644 | 1077817 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 120 | 1277106 | 1277312 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 121 | 836959 | 837132 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 122 | 135255 | 135443 | + | NZ_CP032125.1 | Profundibacter amoris |
| 123 | 2493915 | 2494121 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 124 | 1475619 | 1475825 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 125 | 2166630 | 2166800 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 126 | 224263 | 224436 | - | NZ_CP058235.1 | Bartonella alsatica |
| 127 | 3537338 | 3537526 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 128 | 5028261 | 5028455 | - | NZ_CP017147.1 | Bosea vaviloviae |
| 129 | 1602308 | 1602493 | + | NZ_CP020612.1 | Paracoccus contaminans |
| 130 | 1311757 | 1311951 | + | NZ_CP024199.1 | Thalassospira marina |
| 131 | 2593784 | 2593972 | - | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 132 | 3274572 | 3274760 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 133 | 1658389 | 1658559 | - | NZ_CP025583.1 | Paracoccus jeotgali |
| 134 | 3310286 | 3310474 | - | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 135 | 1793337 | 1793507 | - | NZ_CP045072.1 | Paracoccus kondratievae |
| 136 | 2223859 | 2224053 | - | NZ_CP039546.1 | Methylorubrum populi |
| 137 | 2739063 | 2739236 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 138 | 928011 | 928217 | + | NZ_CP010401.1 | Bartonella ancashensis |
| 139 | 720241 | 720447 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 140 | 3368301 | 3368504 | - | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 141 | 575093 | 575263 | + | NZ_AP019773.1 | Bartonella quintana |
| 142 | 2019983 | 2020174 | + | NZ_CP061205.1 | Kordiimonas pumila |
| 143 | 2472046 | 2472237 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 144 | 1610050 | 1610235 | + | NZ_CP027850.1 | Caulobacter segnis |
| 145 | 2756503 | 2756691 | - | NZ_LN832559.1 | Paracoccus aminovorans |
| 146 | 640046 | 640234 | - | NZ_CP024422.1 | Paracoccus yeei |
| 147 | 1117446 | 1117634 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 148 | 52852 | 53037 | + | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 149 | 2894237 | 2894410 | - | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 150 | 2183821 | 2184009 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 151 | 5130266 | 5130457 | - | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 152 | 1492385 | 1492570 | - | NC_009511.1 | Sphingomonas wittichii RW1 |
| 153 | 1338652 | 1338837 | + | NZ_CP013002.1 | Caulobacter henricii |
| 154 | 6587527 | 6587718 | - | NZ_CP029550.1 | Methylobacterium durans |
| 155 | 1370836 | 1371024 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 156 | 2706294 | 2706479 | - | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 157 | 3267450 | 3267641 | + | NZ_CP019948.1 | Methylocystis bryophila |
| 158 | 984090 | 984281 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 159 | 308822 | 309013 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 160 | 1085162 | 1085353 | + | NC_014313.1 | Hyphomicrobium denitrificans ATCC 51888 |
| 161 | 1907888 | 1908085 | - | NZ_AP018907.1 | Blastochloris tepida |
| 162 | 243694 | 243882 | - | NZ_CP022048.2 | Brevundimonas vesicularis |
| 163 | 1677812 | 1677994 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 164 | 4817693 | 4817884 | + | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
| 165 | 1126814 | 1126999 | + | NZ_CP053015.1 | Sphingomonas lacunae |
| 166 | 2008733 | 2008918 | + | NZ_CP044331.1 | Methylocystis parvus |
| 167 | 2974827 | 2975012 | + | NZ_CP026100.1 | Caulobacter flavus |
| 168 | 3190532 | 3190702 | - | NZ_CP042906.1 | Hypericibacter terrae |
| 169 | 3828010 | 3828195 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 170 | 2595213 | 2595404 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 171 | 3698143 | 3698328 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 172 | 1516235 | 1516432 | + | NZ_CP012946.1 | Blastochloris viridis |
| 173 | 3559547 | 3559741 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 174 | 2670840 | 2671034 | + | NZ_CP020470.1 | Rhodobacter blasticus |
| 175 | 1884661 | 1884846 | + | NZ_CP024201.1 | Caulobacter mirabilis |
| 176 | 2212918 | 2213106 | - | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 177 | 1516270 | 1516461 | + | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 178 | 1440030 | 1440215 | + | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 179 | 3089828 | 3090031 | - | NZ_CP061038.1 | Sphingomonas alpina |
| 180 | 1152399 | 1152605 | - | NZ_CP039964.1 | Pseudorhodobacter turbinis |
| 181 | 3431211 | 3431405 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 182 | 2061821 | 2061991 | - | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 183 | 363022 | 363213 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 184 | 3546874 | 3547062 | - | NZ_CP048815.1 | Caulobacter rhizosphaerae |
| 185 | 4398382 | 4398573 | + | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 186 | 227116 | 227319 | - | NZ_CP024920.1 | Qipengyuania seohaensis |
| 187 | 5161824 | 5162030 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 188 | 4052687 | 4052893 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 189 | 1311735 | 1311929 | + | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 190 | 1907470 | 1907664 | + | NZ_CP031555.1 | Thalassospira indica |
| 191 | 1249888 | 1250085 | + | NZ_CP030265.1 | Skermanella pratensis |
| 192 | 928538 | 928729 | + | NZ_CP029353.1 | Azospirillum thermophilum |
| 193 | 3031404 | 3031610 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 194 | 4307307 | 4307483 | - | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 195 | 2044907 | 2045077 | - | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 196 | 5727280 | 5727474 | + | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 197 | 178381 | 178569 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 198 | 1914700 | 1914876 | - | NZ_CP035765.1 | Sphingomonas paucimobilis |
| 199 | 1996729 | 1996920 | - | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 200 | 3014446 | 3014637 | + | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 201 | 1386597 | 1386782 | + | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 202 | 1467537 | 1467722 | + | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 203 | 6130978 | 6131172 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 204 | 3962780 | 3962974 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 205 | 2997326 | 2997520 | + | NC_017082.1 | Bradyrhizobium cosmicum |
| 206 | 5863488 | 5863682 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 207 | 5585953 | 5586147 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 208 | 4202334 | 4202528 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 209 | 1271555 | 1271731 | + | NZ_CP017057.1 | Erythrobacter litoralis |
| 210 | 3099426 | 3099617 | - | NC_017584.1 | Rhodospirillum rubrum F11 |
| 211 | 3599647 | 3599841 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 212 | 6277349 | 6277555 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 213 | 3937608 | 3937799 | + | NZ_CP046052.1 | Methylocystis heyeri |
| 214 | 1328502 | 1328681 | + | NZ_CP016545.1 | Paraurantiacibacter namhicola |
| 215 | 1307276 | 1307452 | + | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 216 | 2418277 | 2418462 | - | NZ_CP031357.1 | Erythrobacter aureus |
| 217 | 2023405 | 2023596 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 218 | 1664833 | 1665021 | - | NZ_CP034328.1 | Tabrizicola piscis |
| 219 | 2128082 | 2128273 | - | NZ_AP017655.1 | Sphingobium cloacae |
| 220 | 342109 | 342279 | + | NZ_CP061202.1 | Rhodobacter capsulatus |
| 221 | 537081 | 537269 | + | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 222 | 1496709 | 1496888 | + | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 223 | 3266904 | 3267095 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 224 | 2266373 | 2266558 | - | NZ_CP053921.1 | Erythrobacter mangrovi |
| 225 | 2395654 | 2395833 | - | NZ_CP060052.1 | Croceicoccus marinus |
| 226 | 1118512 | 1118697 | - | NZ_CP022889.1 | Tsuneonella mangrovi |
| 227 | 3211342 | 3211539 | - | NZ_CP025086.1 | Methylovirgula ligni |
| 228 | 2970148 | 2970324 | - | NZ_CP016033.1 | Erythrobacter neustonensis |
| 229 | 1508719 | 1508913 | + | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 230 | 2964115 | 2964297 | - | NC_008048.1 | Sphingopyxis alaskensis RB2256 |
| 231 | 2131794 | 2131970 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 232 | 1903108 | 1903296 | + | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 233 | 2190954 | 2191139 | - | NZ_AP019389.1 | Qipengyuania flava |
| 234 | 4713036 | 4713230 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 235 | 3062832 | 3063005 | + | NZ_CP051131.1 | Parasphingopyxis algicola |
| 236 | 52999 | 53202 | - | NZ_CP060244.1 | Entomobacter blattae |
| 237 | 4420031 | 4420216 | + | NZ_CP009122.1 | Sphingopyxis fribergensis |
| 238 | 3655588 | 3655758 | - | NZ_AP014946.1 | Variibacter gotjawalensis |
| 239 | 85531 | 85707 | - | NZ_CP020083.1 | Blastomonas fulva |
| 240 | 907554 | 907724 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 241 | 1767714 | 1767908 | + | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 242 | 621015 | 621188 | - | NC_011666.1 | Methylocella silvestris BL2 |
| 243 | 542823 | 543008 | + | NZ_CP015164.1 | Acetobacter ascendens |
| 244 | 1082059 | 1082232 | - | NZ_CP053923.1 | Defluviicoccus vanus |
| 245 | 890420 | 890605 | + | NZ_CP042808.1 | Acetobacter oryzoeni |
| 246 | 2515602 | 2515787 | + | NC_021991.1 | Acetobacter pasteurianus 386B |
| 247 | 1020434 | 1020619 | + | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 248 | 1235023 | 1235202 | - | NZ_CP037948.1 | Qipengyuania sediminis |
| 249 | 1310244 | 1310414 | - | NZ_CP071057.1 | Marinicauda algicola |
| 250 | 1487696 | 1487881 | - | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 251 | 4892492 | 4892677 | + | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 252 | 157505 | 157690 | - | NZ_LN606600.1 | Acetobacter senegalensis |
| 253 | 917702 | 917905 | + | NZ_AP019700.1 | Stella humosa |
| 254 | 1357344 | 1357532 | - | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 255 | 668163 | 668354 | - | NZ_CP041659.1 | Sphingomonas xanthus |
| 256 | 3558659 | 3558871 | - | NZ_CP041636.1 | Ferrovibrio terrae |
| 257 | 1199599 | 1199787 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 258 | 1156516 | 1156722 | + | NZ_CP053708.1 | Lichenicola cladoniae |
| 259 | 1156904 | 1157104 | + | NZ_CP029176.1 | Acidibrevibacterium fodinaquatile |
| 260 | 1813315 | 1813527 | + | NZ_CP047045.1 | Terricaulis silvestris |
| 261 | 1210583 | 1210771 | - | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 262 | 1020133 | 1020312 | + | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 263 | 821223 | 821408 | + | NZ_AP014690.1 | Asaia bogorensis NBRC 16594 |
| 264 | 354672 | 354860 | - | NZ_CP032485.1 | Neokomagataea tanensis |
| 265 | 2222491 | 2222685 | - | NZ_CP060718.1 | Sphingomonas lutea |
| 266 | 2826753 | 2826929 | - | NZ_LR134384.1 | Prevotella oris |
| 267 | 407682 | 407870 | - | NZ_CP038141.1 | Swingsia samuiensis |
| 268 | 459660 | 459848 | - | NZ_CP068419.1 | Gluconobacter sphaericus |
| 269 | 889318 | 889497 | + | NC_014972.1 | Desulfobulbus propionicus DSM 2032 |
| 270 | 2849797 | 2849973 | - | NZ_LT608328.1 | Petrimonas mucosa |
| 271 | 237652 | 237837 | + | NZ_CP061941.1 | Marinomonas algicola |
| 272 | 1950861 | 1951049 | - | NZ_CP014689.1 | Gluconobacter albidus |
| 273 | 411254 | 411442 | - | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 274 | 67755 | 67931 | - | NZ_CP024727.1 | Prevotella intermedia |
| 275 | 267649 | 267825 | + | NZ_CP013195.1 | Prevotella enoeca |
| 276 | 282737 | 282925 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 277 | 332734 | 332916 | + | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 278 | 2527786 | 2527962 | - | NC_014033.1 | Prevotella ruminicola 23 |
| 279 | 450676 | 450852 | + | NC_014370.1 | Prevotella melaninogenica ATCC 25845 |
| 280 | 3674860 | 3675045 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 281 | 1144142 | 1144318 | - | NZ_CP012074.1 | Prevotella fusca JCM 17724 |
| 282 | 1637440 | 1637625 | - | NC_014761.1 | Oceanithermus profundus DSM 14977 |
| 283 | 3134440 | 3134619 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 284 | 3780342 | 3780521 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 285 | 2209350 | 2209529 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP071604.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00253.23 | 0.99 | 282 | 2025.0 | same-strand | Ribosomal protein S14p/S29e |
| 2 | PF00410.21 | 0.99 | 283 | 1617 | same-strand | Ribosomal protein S8 |
| 3 | PF00347.25 | 1.0 | 285 | 1067 | same-strand | Ribosomal protein L6 |
| 4 | PF00861.24 | 1.0 | 284 | 693.5 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 5 | PF03719.17 | 1.0 | 284 | 13.0 | same-strand | Ribosomal protein S5, C-terminal domain |
| 6 | PF00333.22 | 1.0 | 284 | 13.0 | same-strand | Ribosomal protein S5, N-terminal domain |
| 7 | PF00828.21 | 0.96 | 274 | 24.0 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 8 | PF00344.22 | 0.95 | 270 | 702 | same-strand | SecY |
| 9 | PF00406.24 | 0.86 | 246 | 2063.5 | same-strand | Adenylate kinase |
| 10 | PF13207.8 | 0.86 | 246 | 2063.5 | same-strand | AAA domain |
| 11 | PF13671.8 | 0.84 | 238 | 2063.5 | same-strand | AAA domain |
| 12 | PF13238.8 | 0.83 | 236 | 2063.5 | same-strand | AAA domain |
| 13 | PF00416.24 | 0.75 | 213 | 2883 | same-strand | Ribosomal protein S13/S18 |
| 14 | PF00411.21 | 0.64 | 182 | 3348.0 | same-strand | Ribosomal protein S11 |
++ More..