ProsmORF-pred
Result : Q1LTY2
Protein Information
Information Type Description
Protein name DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega)
NCBI Accession ID CP000238.1
Organism Baumannia cicadellinicola subsp. Homalodisca coagulata
Left 122774
Right 122971
Strand +
Nucleotide Sequence ATGGCACGTATCACTGTACAAGACGCGGTTGAAAAAATAGGTAATCGCTTTAATCTCGTGCTCATAGCAGCTCGTAGAGCTCGCCAAATTCAGATAAATGGCAAAGATCCATTAGTTCCGGAAAAAAATGATAAATCTACTGTCATCGCCCTCAGAGAAATCGAACAAGGTTTAATTGGTAATCAAATTATAGATTGA
Sequence MARITVQDAVEKIGNRFNLVLIAARRARQIQINGKDPLVPEKNDKSTVIALREIEQGLIGNQIID
Source of smORF Swiss-Prot
Function Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}.
Pubmed ID 16729848
Domain CDD:417484
Functional Category Others
Uniprot ID Q1LTY2
ORF Length (Amino Acid) 65
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Conservation Analysis
Conservation Analysis
No. of Species: 202
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 370180 370377 + NC_016893.1 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
2 2763497 2763709 - NZ_CP017715.1 Marinobacter salinus
3 2149961 2150164 - NZ_CP038254.1 Legionella israelensis
4 1040244 1040447 + NC_013861.1 Legionella longbeachae NSW150
5 486161 486364 + NZ_CP025491.2 Legionella sainthelensi
6 2761258 2761461 - NZ_LN614830.1 Tatlockia micdadei
7 3420841 3421053 - NZ_CP043869.1 Neptunomonas concharum
8 2572243 2572446 - NZ_CP016397.1 Legionella clemsonensis
9 701266 701469 + NZ_LN681225.1 Legionella hackeliae
10 137516 137719 - NZ_LR134418.1 Legionella adelaidensis
11 2463733 2463939 - NZ_LN614827.1 Legionella fallonii LLAP-10
12 714221 714433 + NZ_CP043042.1 Marinobacter fonticola
13 649508 649720 + NZ_CP011494.1 Marinobacter psychrophilus
14 143222 143434 + NZ_CP007142.1 Gynuella sunshinyii YC6258
15 2260487 2260690 - NZ_CP013742.1 Legionella pneumophila
16 3888182 3888394 - NZ_CP020931.1 Marinobacter salarius
17 2394947 2395150 - NZ_LT906442.1 Legionella waltersii
18 294576 294788 + NC_017506.1 Marinobacter adhaerens HP15
19 611140 611343 + NZ_LT906451.1 Legionella lansingensis
20 3749858 3750070 + NZ_AP014545.1 Amphritea japonica ATCC BAA-1530
21 4974148 4974360 - NZ_CP015839.1 Marinobacterium aestuarii
22 1783388 1783594 - NZ_LR134533.1 Neisseria weaveri
23 3547691 3547900 - NZ_CP011797.1 Reinekea forsetii
24 58820 59026 - NC_007614.1 Nitrosospira multiformis ATCC 25196
25 1902190 1902414 + NZ_CP070273.1 Marinomonas foliarum
26 4441438 4441662 + NZ_CP061081.1 Marinomonas arctica
27 1987415 1987621 + NZ_CP022278.1 Neisseria chenwenguii
28 3086647 3086850 + NZ_LR134374.1 Legionella spiritensis
29 1247598 1247804 + NZ_CP059563.1 Conchiformibius steedae
30 6454038 6454247 - NC_007645.1 Hahella chejuensis KCTC 2396
31 441996 442202 - NC_014394.1 Gallionella capsiferriformans ES-2
32 566424 566630 - NZ_CP031325.1 Neisseria polysaccharea
33 1281133 1281339 - NZ_CP021520.1 Neisseria meningitidis
34 287520 287726 - NZ_CP012028.1 Neisseria gonorrhoeae
35 1389958 1390164 - NZ_CP031253.1 Neisseria lactamica
36 3439336 3439551 + NZ_CP072793.1 Thiothrix unzii
37 1627510 1627716 + NZ_CP031700.1 Neisseria zalophi
38 195916 196128 + NC_012968.1 Methylotenera mobilis JLW8
39 1017141 1017347 + NZ_CP019448.1 Simonsiella muelleri ATCC 29453
40 274879 275085 - NZ_CP022579.1 Oryzomicrobium terrae
41 2036916 2037131 + NZ_AP018558.1 Hydrogenophilus thermoluteolus
42 1122959 1123165 - NZ_LS483369.1 Neisseria cinerea
43 1638997 1639200 + NZ_CP007446.1 Snodgrassella alvi wkB2
44 239687 239893 - NZ_CP031699.1 Neisseria animalis
45 1532140 1532346 + NZ_LR134516.1 Neisseria animaloris
46 308796 309002 + NZ_CP039886.1 Neisseria flavescens
47 1673016 1673222 - NZ_CP012371.1 Nitrosospira briensis C-128
48 703900 704106 - NZ_CP060414.1 Neisseria musculi
49 80298 80522 - NZ_CP007030.1 Thiomicrospira aerophila AL3
50 2046737 2046943 - NZ_LT906434.1 Neisseria zoodegmatis
51 846442 846648 - NZ_CP031252.1 Neisseria elongata
52 1926255 1926461 + NZ_CP059564.1 Alysiella filiformis
53 406787 406993 - NC_013959.1 Sideroxydans lithotrophicus ES-1
54 47970 48182 + NC_007947.1 Methylobacillus flagellatus KT
55 48018 48242 - NC_015581.1 Thiomicrospira cyclica ALM1
56 1902899 1903102 - NZ_HG916765.1 Castellaniella defragrans 65Phen
57 1138397 1138603 + NZ_CP059567.1 Neisseria shayeganii
58 1254466 1254675 - NZ_CP059569.1 Kingella oralis
59 1973479 1973685 - NZ_CP059571.1 Neisseria bacilliformis
60 1408929 1409135 - NZ_CP072524.1 Neisseria sicca
61 492834 493040 - NZ_CP021106.3 Nitrosospira lacus
62 1282788 1282994 + NZ_CP038018.1 Eikenella exigua
63 625377 625583 + NZ_LT906482.1 Eikenella corrodens
64 3155511 3155717 + NZ_AP022853.1 Sulfurimicrobium lacus
65 1745026 1745232 + NZ_AP018721.1 Sulfuritortus calidifontis
66 1786264 1786470 - NZ_CP046027.1 Neisseria brasiliensis
67 58900 59112 + NC_012969.1 Methylovorus glucosetrophus SIP3-4
68 107017 107229 + NC_014207.1 Methylotenera versatilis 301
69 3003793 3003999 + NZ_CP013341.1 Nitrosomonas ureae
70 465079 465285 - NZ_AP022345.1 Fluviibacter phosphoraccumulans
71 572721 572927 + NZ_AP021884.1 Sulfuriferula plumbiphila
72 358980 359186 + NZ_CP039887.1 Neisseria subflava
73 538756 538962 - NC_022357.1 Sulfuricella denitrificans skB26
74 665733 665942 + NZ_CP010554.1 Rugosibacter aromaticivorans
75 1555762 1555968 - NZ_CP059565.1 Neisseria wadsworthii
76 2040414 2040623 + NZ_CP041730.1 Chitinimonas arctica
77 1568246 1568452 - NZ_LR134313.1 Neisseria canis
78 2617121 2617327 - NZ_AP018738.1 Ferriphaselus amnicola
79 2305957 2306157 - NZ_CP040882.1 Sutterella faecalis
80 754520 754729 - NZ_CP058952.1 Chitinibacter fontanus
81 140106 140312 - NZ_CP047165.1 Pelistega ratti
82 99285 99506 + NZ_CP053069.1 Usitatibacter rugosus
83 1957747 1957953 - NC_017964.1 Advenella kashmirensis WT001
84 2155100 2155306 - NZ_CP003915.1 Advenella mimigardefordensis DPN7
85 2187465 2187665 + NZ_CP068055.1 Sutterella wadsworthensis
86 750717 750923 - NZ_CP021060.1 Taylorella equigenitalis
87 3351405 3351608 - NZ_CP011451.1 Nitrosomonas communis
88 3617639 3617845 + NZ_LR778301.1 Denitratisoma oestradiolicum
89 659321 659530 - NZ_CP041335.1 Chitinolyticbacter meiyuanensis
90 581043 581243 - NZ_AP018786.1 Sutterella megalosphaeroides
91 3194415 3194630 + NZ_CP014646.1 Thauera humireducens
92 96385 96606 + NZ_CP053073.1 Usitatibacter palustris
93 202673 202888 + NZ_CP025682.1 Azoarcus pumilus
94 627139 627342 + NC_014722.1 Mycetohabitans rhizoxinica HKI 454
95 4355846 4356049 - NZ_CP034464.1 Undibacterium parvum
96 1135366 1135569 + NZ_CP062803.1 Cupriavidus basilensis
97 1867247 1867450 - NZ_AP019755.1 Nitrosomonas stercoris
98 1356050 1356253 + NZ_AP014568.1 Serpentinomonas raichei
99 1303985 1304188 + NZ_CP011568.3 Pandoraea thiooxydans
100 3152939 3153142 - NZ_CP024941.1 Paraburkholderia terricola
101 254999 255214 + NZ_CP018839.1 Thauera chlorobenzoica
102 945107 945310 + NZ_CP054626.1 Cupriavidus gilardii
103 1579865 1580068 + NZ_CP017754.1 Cupriavidus malaysiensis
104 993685 993891 + NC_016043.1 Taylorella asinigenitalis MCE3
105 1046860 1047063 + NZ_CP039287.1 Cupriavidus necator H16
106 1305722 1305925 + NZ_CP022987.1 Pusillimonas thiosulfatoxidans
107 3259857 3260063 - NC_023018.2 Pandoraea pnomenusa
108 689367 689570 - NZ_CP018787.1 Oxalobacter formigenes
109 1394753 1394956 - NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
110 5214028 5214231 + NZ_CP023422.1 Janthinobacterium svalbardensis
111 2872156 2872359 + NZ_CP041185.1 Janthinobacterium tructae
112 5277687 5277890 + NZ_CP048832.1 Janthinobacterium lividum
113 3328765 3328968 - NZ_CP024608.1 Massilia violaceinigra
114 733911 734114 - NZ_LT615228.1 Polynucleobacter necessarius
115 1141291 1141494 + NZ_LT671418.1 Herminiimonas arsenitoxidans
116 908284 908487 + NZ_CP032519.1 Cupriavidus oxalaticus
117 2296881 2297084 - NZ_CP046913.1 Paraburkholderia acidisoli
118 563286 563489 + NZ_CP020046.1 Thiomonas intermedia
119 198923 199126 + NZ_CP017561.1 Paraburkholderia sprentiae WSM5005
120 2582962 2583165 + NZ_CP019038.1 Massilia putida
121 2348126 2348329 - NZ_CP009795.1 Burkholderia dolosa AU0158
122 1384220 1384423 + NZ_CP009727.1 Burkholderia mallei
123 755495 755698 + NC_010622.1 Paraburkholderia phymatum STM815
124 1021917 1022120 + NZ_CP013398.1 Burkholderia seminalis
125 1025764 1025967 + NZ_CP013401.1 Burkholderia metallica
126 2295508 2295711 + NZ_CP011503.1 Burkholderia pyrrocinia
127 1031172 1031375 + NZ_CP013450.1 Burkholderia cenocepacia
128 786985 787188 + NZ_CP026111.1 Paraburkholderia terrae
129 1205721 1205924 - NZ_CP015958.1 Paraburkholderia caribensis
130 1023520 1023723 + NZ_CP045235.1 Burkholderia cepacia
131 1036578 1036781 + NC_007510.1 Burkholderia lata
132 1058667 1058870 + NZ_CP020737.1 Paraburkholderia acidophila
133 3582669 3582872 + NZ_CP066075.1 Paraburkholderia ginsengisoli
134 2777662 2777865 + NZ_CP008781.1 Burkholderia pseudomallei
135 3114996 3115199 - NZ_CP024934.1 Paraburkholderia graminis
136 2757974 2758177 + NZ_CP009555.1 Burkholderia oklahomensis C6786
137 2073197 2073400 + NZ_CP022989.1 Paraburkholderia aromaticivorans
138 3479069 3479272 - NC_010681.1 Paraburkholderia phytofirmans PsJN
139 3887969 3888172 - NC_007951.1 Paraburkholderia xenovorans LB400
140 2236862 2237065 - NZ_CP029640.1 Paraburkholderia dokdonella
141 2337063 2337266 - NZ_CP046909.1 Paraburkholderia acidiphila
142 2384792 2384995 - NZ_CP049134.1 Paraburkholderia tropica
143 1149578 1149781 + NZ_CP009832.1 Burkholderia multivorans ATCC BAA-247
144 1150450 1150653 + NZ_CP013414.1 Burkholderia ubonensis
145 1227633 1227836 - NZ_CP031467.1 Paraburkholderia caffeinilytica
146 1286445 1286648 + NZ_AP014569.1 Serpentinomonas mccroryi
147 802535 802738 + NC_021287.1 Caballeronia insecticola
148 3121707 3121910 + NZ_CP035900.1 Burkholderia glumae
149 2448813 2449016 - NZ_CP037993.1 Herbaspirillum huttiense
150 2305336 2305539 - NZ_CP013737.1 Herbaspirillum rubrisubalbicans M1
151 1691845 1692048 - NZ_CP040709.1 Inhella inkyongensis
152 990609 990812 + NZ_CP016022.1 Ralstonia insidiosa
153 1862685 1862888 - NZ_CP043046.1 Pigmentiphaga aceris
154 700299 700502 + NZ_CP023276.1 Polynucleobacter difficilis
155 1281912 1282115 + NZ_CP018845.1 Herbaspirillum robiniae
156 1887054 1887257 + NZ_CP068285.1 Ralstonia syzygii subsp. celebesensis
157 627313 627516 - NZ_CP011257.1 Ralstonia mannitolilytica
158 3142038 3142241 + NZ_CP021359.1 Acidovorax carolinensis
159 1084704 1084907 + NZ_CP013459.1 Burkholderia stagnalis
160 1786519 1786722 + NC_007651.1 Burkholderia thailandensis E264
161 2089971 2090174 + NC_010645.1 Bordetella avium 197N
162 2349125 2349328 + NZ_CP016440.1 Bordetella pseudohinzii
163 4244099 4244302 + NZ_CP021395.1 Bordetella hinzii
164 3955019 3955222 + NC_008752.1 Acidovorax citrulli AAC00-1
165 3963238 3963441 + NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860
166 3508446 3508649 + NC_015677.1 Ramlibacter tataouinensis TTB310
167 3485141 3485344 + NC_007908.1 Rhodoferax ferrireducens T118
168 778132 778335 + NC_010524.1 Leptothrix cholodnii SP-6
169 3095224 3095427 + NZ_CP065748.1 Delftia lacustris
170 3183588 3183791 + NZ_CP017420.1 Delftia tsuruhatensis
171 1005137 1005340 - NZ_CP037867.1 Hydrogenophaga pseudoflava
172 4646541 4646744 + NC_008786.1 Verminephrobacter eiseniae EF01-2
173 5939420 5939623 - NZ_LR134302.1 Achromobacter spanius
174 2928527 2928730 - NZ_CP035708.1 Sphaerotilus natans subsp. sulfidivorans
175 979779 979982 + NZ_CP002580.1 Burkholderia plantarii
176 2593251 2593454 + NZ_LT907988.1 Orrella dioscoreae
177 4287988 4288191 - NZ_CP060790.1 Acidovorax monticola
178 1103717 1103920 - NZ_CP017476.1 Hydrogenophaga crassostreae
179 2091660 2091863 - NZ_CP013235.1 Collimonas arenae
180 2395672 2395875 - NZ_CP011930.1 Herbaspirillum seropedicae
181 2887388 2887591 + NC_008825.1 Methylibium petroleiphilum PM1
182 2013880 2014083 - NZ_CP020121.1 Comamonas kerstersii
183 2682294 2682497 - NZ_CP016172.1 Bordetella flabilis
184 4852984 4853187 + NZ_CP024645.1 Rhizobacter gummiphilus
185 3163041 3163244 - NZ_CP038034.1 Achromobacter insolitus
186 1677164 1677367 + NZ_CP053986.1 Achromobacter denitrificans
187 2014243 2014446 + NC_018518.1 Bordetella pertussis 18323
188 1081811 1082014 - NC_009379.1 Polynucleobacter asymbioticus QLW-P1DMWA-1
189 1718703 1718906 - NZ_CP043146.1 Bordetella holmesii
190 1255542 1255742 - NZ_AP021875.1 Desulfosarcina widdelii
191 567442 567642 + NZ_AP021874.1 Desulfosarcina alkanivorans
192 854713 854916 - NC_008781.1 Polaromonas naphthalenivorans CJ2
193 1014784 1014987 - NZ_CP019240.1 Rhodoferax antarcticus
194 1616576 1616776 + NZ_CP047650.1 Xylophilus rhododendri
195 701941 702144 - NZ_CP051461.1 Polaromonas vacuolata
196 726106 726309 - NZ_CP012943.1 Ralstonia solanacearum
197 2541632 2541835 + NZ_AP019378.1 Bordetella parapertussis
198 2774381 2774584 + NZ_LR134326.1 Bordetella bronchiseptica
199 924054 924257 - NZ_CP019239.1 Rhodoferax saidenbachensis
200 1013712 1013915 - NZ_CP030086.1 Polynucleobacter paneuropaeus
201 712993 713196 + NZ_CP007501.1 Polynucleobacter duraquae
202 569119 569322 - NZ_CP022423.1 Vitreoscilla filiformis
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP017715.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00625.23 0.98 197 58 same-strand Guanylate kinase
2 PF13328.8 0.97 195 79.5 same-strand HD domain
3 PF04607.19 0.97 195 81.0 same-strand Region found in RelA / SpoT proteins
4 PF02824.23 0.97 195 81.0 same-strand TGS domain
5 PF13291.8 0.96 193 81.0 same-strand ACT domain
6 PF01966.24 0.97 195 79.5 same-strand HD domain
7 PF03755.15 0.62 126 757.5 same-strand YicC-like family, N-terminal region
8 PF08340.13 0.62 126 757.0 same-strand Domain of unknown function (DUF1732)
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