* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008095.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00253.23
|
1.0
|
5
|
2235
|
same-strand
|
Ribosomal protein S14p/S29e
|
2
|
PF00410.21
|
1.0
|
5
|
1643
|
same-strand
|
Ribosomal protein S8
|
3
|
PF00347.25
|
1.0
|
5
|
1012
|
same-strand
|
Ribosomal protein L6
|
4
|
PF00861.24
|
1.0
|
5
|
547
|
same-strand
|
Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
|
5
|
PF00333.22
|
1.0
|
5
|
4
|
same-strand
|
Ribosomal protein S5, N-terminal domain
|
6
|
PF03719.17
|
1.0
|
5
|
4
|
same-strand
|
Ribosomal protein S5, C-terminal domain
|
7
|
PF00828.21
|
1.0
|
5
|
21
|
same-strand
|
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
|
8
|
PF00344.22
|
0.8
|
4
|
682.5
|
same-strand
|
SecY
|
9
|
PF00406.24
|
1.0
|
5
|
2192
|
same-strand
|
Adenylate kinase
|
10
|
PF13207.8
|
1.0
|
5
|
2192
|
same-strand
|
AAA domain
|
11
|
PF05191.16
|
1.0
|
5
|
2192
|
same-strand
|
Adenylate kinase, active site lid
|
12
|
PF13238.8
|
1.0
|
5
|
2192
|
same-strand
|
AAA domain
|
13
|
PF01176.21
|
1.0
|
5
|
3237
|
same-strand
|
Translation initiation factor 1A / IF-1
|
++ More..