ProsmORF-pred
Result : Q18CH8
Protein Information
Information Type Description
Protein name 50S ribosomal protein L30
NCBI Accession ID AM180355.1
Organism Clostridioides difficile (strain 630) (Peptoclostridium difficile)
Left 111238
Right 111423
Strand +
Nucleotide Sequence ATGGCTAAATTACAAATAAAGTTAGTTAGAAGTGTTATAGGAACTACTCCTAACCAAAAAAAGAATGTTGAAGCGTTAGGATTAAGAAAAAGAGAACAAGTTGTTGTAAAAGAAGACAATGCTCAAACAAGAGGTATGATAAATAAAGTAAGTCACTTATTAGAAGTAACTGAAATAGCTGAATAA
Sequence MAKLQIKLVRSVIGTTPNQKKNVEALGLRKREQVVVKEDNAQTRGMINKVSHLLEVTEIAE
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7.
Pubmed ID 16804543
Domain CDD:412218
Functional Category Ribosomal_protein
Uniprot ID Q18CH8
ORF Length (Amino Acid) 61
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 527
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 3946501 3946686 - NZ_CP019870.1 Clostridioides difficile
2 89902 90087 + NZ_CP014150.1 Paeniclostridium sordellii
3 28654 28839 - NZ_CP036523.1 Peptacetobacter hiranonis
4 150429 150608 + NZ_CP007452.1 Peptoclostridium acidaminophilum DSM 3953
5 156871 157056 - NZ_AP017312.1 Aneurinibacillus soli
6 3627321 3627500 - NZ_CP033433.1 Cohnella candidum
7 2300503 2300682 - NC_014614.1 Acetoanaerobium sticklandii
8 179141 179320 + NZ_CP038015.1 Paenisporosarcina antarctica
9 207849 208031 + NZ_CP010820.1 Lysinibacillus fusiformis
10 4175562 4175741 - NZ_CP020559.1 Clostridium formicaceticum
11 5695114 5695299 - NZ_CP034346.1 Paenibacillus lutimineralis
12 2348023 2348202 + NZ_CP009709.1 Weizmannia coagulans DSM 1 = ATCC 7050
13 6275615 6275800 - NZ_CP021780.1 Paenibacillus donghaensis
14 3815134 3815313 - NZ_CP009687.1 Clostridium aceticum
15 1642796 1642981 + NZ_CP034248.1 Paenibacillus lentus
16 567892 568071 + NC_009922.1 Alkaliphilus oremlandii OhILAs
17 2593878 2594057 - NZ_LR134483.1 Listeria grayi
18 281413 281598 - NZ_CP026363.1 Brevibacillus agri
19 4395107 4395292 + NZ_CP045295.1 Paenibacillus cellulositrophicus
20 6150639 6150824 - NZ_CP009428.1 Paenibacillus odorifer
21 1803867 1804052 - NZ_CP041217.1 Saccharibacillus brassicae
22 3852710 3852895 - NC_015275.1 Cellulosilyticum lentocellum DSM 5427
23 1122276 1122461 - NZ_CP048429.1 Paenibacillus jilunlii
24 6428947 6429132 - NZ_CP009287.1 Paenibacillus graminis
25 1144602 1144787 - NZ_CP068595.1 Paenibacillus sonchi
26 7129869 7130054 - NZ_LN831776.1 Paenibacillus riograndensis SBR5
27 7393804 7393989 - NZ_CP009285.1 Paenibacillus borealis
28 318917 319102 + NC_019897.1 Thermobacillus composti KWC4
29 4492886 4493068 - NZ_CP006837.1 Lysinibacillus varians
30 251661 251843 + NZ_CP019980.1 Lysinibacillus sphaericus
31 6385139 6385324 - NZ_CP026520.1 Paenibacillus chitinolyticus
32 1410258 1410443 + NZ_CP059066.1 Koleobacter methoxysyntrophicus
33 5013225 5013410 - NZ_CP009286.1 Paenibacillus stellifer
34 155756 155938 + NZ_CP017962.1 Virgibacillus halodenitrificans
35 4127024 4127206 - NZ_CP031223.1 Psychrobacillus glaciei
36 4569404 4569583 - NC_009633.1 Alkaliphilus metalliredigens QYMF
37 438666 438848 + NZ_CP017560.1 Sporosarcina ureilytica
38 6124320 6124499 - NZ_AP019400.1 Cohnella abietis
39 2983075 2983257 + NZ_CP038012.1 Sporosarcina pasteurii
40 565649 565828 + NZ_LT906462.1 Mammaliicoccus stepanovicii
41 5128647 5128832 - NZ_CP013023.1 Paenibacillus bovis
42 155208 155390 + NZ_CP023704.1 Caldibacillus thermoamylovorans
43 1032518 1032703 - NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178
44 721936 722127 - NC_015707.1 Pseudothermotoga thermarum DSM 5069
45 1308004 1308186 - NZ_CP027228.1 Mogibacterium diversum
46 2592523 2592702 - NC_013891.1 Listeria seeligeri serovar 1/2b str. SLCC3954
47 2718408 2718587 - NZ_CP009577.1 Listeria ivanovii subsp. ivanovii
48 2697267 2697446 - NC_003210.1 Listeria monocytogenes EGD-e
49 387160 387339 + NZ_CP011102.1 Listeria weihenstephanensis
50 141985 142164 + NC_006270.3 Bacillus licheniformis DSM 13 = ATCC 14580
51 776672 776851 + NZ_CP064056.1 Staphylococcus lloydii
52 129946 130134 + NZ_CP015378.1 Fictibacillus phosphorivorans
53 903572 903760 + NZ_CP018776.1 Staphylococcus condimenti
54 275387 275572 + NZ_LR134338.1 Brevibacillus brevis
55 730042 730221 + NZ_LR134089.1 Staphylococcus saprophyticus
56 796735 796914 + NZ_CP008724.1 Staphylococcus xylosus
57 1052258 1052437 - NZ_CP022096.2 Staphylococcus pettenkoferi
58 1662620 1662799 - NZ_CP068061.1 Mammaliicoccus vitulinus
59 145137 145325 + NC_013791.2 Alkalihalobacillus pseudofirmus OF4
60 3786525 3786704 - NZ_CP011937.1 Bacillus velezensis
61 279862 280041 + NZ_CP033052.1 Bacillus vallismortis
62 143815 143994 + NZ_CP048852.1 Bacillus tequilensis
63 144837 145016 + NZ_CP053376.1 Bacillus amyloliquefaciens
64 143576 143755 + NZ_CP051464.1 Bacillus mojavensis
65 143701 143880 + NZ_CP034943.1 Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499
66 113595 113774 + NZ_CP013984.1 Bacillus inaquosorum
67 1865648 1865827 - NZ_CP029364.1 Bacillus halotolerans
68 143875 144054 + NC_000964.3 Bacillus subtilis subsp. subtilis str. 168
69 3615911 3616093 - NZ_CP014167.1 Paenibacillus yonginensis
70 150452 150634 + NZ_LT603683.1 Bacillus glycinifermentans
71 2065163 2065345 - NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
72 2240329 2240508 + NZ_CP014022.1 Staphylococcus lugdunensis
73 617658 617837 + NZ_CP065712.1 Staphylococcus auricularis
74 1528423 1528608 - NZ_CP045298.1 Paenibacillus brasilensis
75 668910 669095 + NZ_CP020028.1 Paenibacillus kribbensis
76 338933 339115 + NZ_CP014616.1 Sporosarcina psychrophila
77 133381 133566 + NC_010556.1 Exiguobacterium sibiricum 255-15
78 1441967 1442152 - NC_017095.1 Fervidobacterium pennivorans DSM 9078
79 174465 174644 + NZ_CP023665.1 Bacillus paralicheniformis
80 2694997 2695176 + NZ_CP018199.1 Staphylococcus succinus
81 150190 150360 + NZ_CP016537.2 Planococcus halocryophilus
82 482678 482857 + NZ_CP022046.2 Mammaliicoccus sciuri
83 149896 150066 + NC_004193.1 Oceanobacillus iheyensis HTE831
84 2602841 2603020 - NZ_LT906444.1 Listeria welshimeri
85 3433869 3434048 + NZ_LT635479.1 Lachnoclostridium phocaeense
86 1515096 1515275 + NZ_CP033732.1 Staphylococcus hominis
87 716328 716507 + NZ_LR134242.1 Staphylococcus warneri
88 754667 754846 - NC_022737.1 Staphylococcus pasteuri SP1
89 2163785 2163964 - NZ_LT906460.1 Staphylococcus simiae
90 2265257 2265436 - NZ_LR134304.1 Staphylococcus schweitzeri
91 1777259 1777438 - NZ_CP013911.1 Staphylococcus haemolyticus
92 1635173 1635361 + NZ_CP063356.1 Anaerobacillus isosaccharinicus
93 1150057 1150239 + NZ_CP053187.1 Turicibacter sanguinis
94 3335970 3336152 + NZ_CP013659.2 Planococcus rifietoensis
95 202123 202302 - NZ_CP066042.1 Staphylococcus saccharolyticus
96 1431078 1431257 - NZ_CP007601.1 Staphylococcus capitis subsp. capitis
97 763037 763219 + NZ_CP035288.1 Staphylococcus epidermidis
98 794190 794369 + NZ_AP018587.1 Staphylococcus caprae
99 1722090 1722269 - NZ_LT906464.1 Staphylococcus muscae
100 499940 500119 - NZ_CP036170.1 [Clostridium] scindens ATCC 35704
101 147811 147993 + NZ_CP016538.2 Planococcus maritimus
102 147652 147834 + NZ_CP059540.1 Planococcus maritimus
103 177307 177495 + NC_002570.2 Alkalihalobacillus halodurans C-125
104 1643399 1643584 + NZ_LN831039.1 Mycolicibacterium smegmatis
105 6739809 6739994 - NZ_CP012150.1 Mycobacterium goodii
106 1366348 1366530 - NZ_CP018622.1 Virgibacillus dokdonensis
107 4743980 4744162 + NZ_CP018866.1 Sutcliffiella cohnii
108 147183 147365 + NZ_CP016539.2 Planococcus plakortidis
109 154821 155003 + NZ_CP009416.1 Jeotgalibacillus malaysiensis
110 1933561 1933737 - NZ_CP068564.1 Keratinibaculum paraultunense
111 2330339 2330527 + NZ_CP017705.1 Brevibacillus laterosporus DSM 25
112 188182 188334 + NZ_CP034118.1 Staphylospora marina
113 258444 258626 + NZ_CP053989.1 Niallia circulans
114 2366538 2366714 - NC_018664.1 Gottschalkia acidurici 9a
115 4683609 4683794 - NZ_CP004078.1 Paenibacillus sabinae T27
116 1612371 1612541 - NZ_CP013661.2 Planococcus kocurii
117 580788 580967 + NZ_CP014223.1 Anaerotignum propionicum DSM 1682
118 2309398 2309577 - NC_007795.1 Staphylococcus aureus subsp. aureus NCTC 8325
119 150336 150506 + NZ_CP019401.1 Planococcus faecalis
120 170324 170494 + NZ_CP016543.2 Planococcus donghaensis
121 4048472 4048651 + NZ_LS483468.1 Rhodococcus coprophilus
122 5457518 5457697 - NZ_AP022560.1 Mycolicibacterium moriokaense
123 5290675 5290860 - NZ_CP009288.1 Paenibacillus durus
124 2614248 2614436 + NZ_CP011388.1 Paenibacillus swuensis
125 154850 155020 + NZ_CP016534.2 Planococcus antarcticus DSM 14505
126 1763148 1763327 - NZ_CP045927.1 Staphylococcus agnetis
127 3727558 3727716 + NZ_CP017269.1 Geosporobacter ferrireducens
128 64695 64880 + NZ_CP036259.1 Sporomusa termitida
129 189046 189234 + NZ_CP029797.1 Paraliobacillus zengyii
130 351971 352150 + NC_021184.1 Desulfoscipio gibsoniae DSM 7213
131 1089997 1090173 - NZ_CP063145.1 Cruoricaptor ignavus
132 8369531 8369719 - NC_017672.3 Paenibacillus mucilaginosus K02
133 392334 392513 - NZ_CP049886.1 Vagococcus coleopterorum
134 1286618 1286797 + NZ_CP027770.1 Staphylococcus felis
135 3457479 3457661 + NZ_CP008876.1 Terribacillus goriensis
136 240340 240519 - NZ_AP022598.1 Mycolicibacterium parafortuitum
137 1661374 1661568 - NZ_AP014510.1 Thermotoga profunda AZM34c06
138 321455 321634 + NC_013216.1 Desulfofarcimen acetoxidans DSM 771
139 149526 149678 + NZ_AP021853.1 Sporolactobacillus terrae
140 149576 149758 + NC_022524.1 Bacillus infantis NRRL B-14911
141 712614 712793 + NZ_CP008747.1 Staphylococcus hyicus
142 2194375 2194563 - NZ_CP033460.1 Staphylococcus debuckii
143 3308526 3308708 + NZ_AP022600.1 Mycolicibacterium tokaiense
144 867785 867970 - NC_016751.1 Marinitoga piezophila KA3
145 295516 295701 + NZ_CP030032.1 Bradymonas sediminis
146 138162 138332 + NZ_CP016540.2 Planococcus versutus
147 5850771 5850953 - NZ_CP020809.1 Mycobacterium dioxanotrophicus
148 341987 342163 - NZ_CP070511.1 Parageobacillus toebii
149 1972433 1972612 - NZ_CP013114.1 Staphylococcus equorum
150 359168 359347 + NZ_CP019342.1 Nonlabens tegetincola
151 2360532 2360717 + NZ_CP035807.1 Thiospirochaeta perfilievii
152 2121905 2122087 + NZ_CP015108.1 Sporosarcina ureae
153 90319 90501 + NZ_CP031733.1 Streptococcus chenjunshii
154 1710606 1710788 - NZ_CP034543.1 Streptococcus periodonticum
155 1774964 1775146 - NZ_CP012805.1 Streptococcus anginosus
156 1938123 1938305 - NZ_CP022983.1 Cytobacillus kochii
157 777276 777461 - NC_016641.1 Paenibacillus terrae HPL-003
158 475310 475486 - NZ_CP016622.1 Parageobacillus thermoglucosidasius
159 4586069 4586257 + NZ_CP013652.1 Paenibacillus naphthalenovorans
160 1835135 1835317 - NC_017581.1 Streptococcus thermophilus JIM 8232
161 2944865 2945050 - NZ_CP054614.1 Paenibacillus barcinonensis
162 55719 55904 + NZ_CP040676.1 Exiguobacterium mexicanum
163 146225 146407 - NZ_CP065637.1 Lactococcus garvieae
164 3990865 3991050 + NZ_CP016809.1 Paenibacillus ihbetae
165 673400 673585 + NC_014011.1 Aminobacterium colombiense DSM 12261
166 63831 64013 + NZ_LR594050.1 Streptococcus porcinus
167 147210 147365 + NC_018704.1 Amphibacillus xylanus NBRC 15112
168 3090617 3090769 - NZ_CP014342.1 Geobacillus subterraneus
169 6309284 6309469 - NZ_CP048209.1 Paenibacillus lycopersici
170 2456334 2456501 + NC_016629.1 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay
171 1747377 1747559 - NZ_LR134336.1 Streptococcus oralis ATCC 35037
172 2936 3118 + NZ_CP032621.1 Streptococcus gwangjuense
173 300101 300283 + NC_015875.1 Streptococcus pseudopneumoniae IS7493
174 1610282 1610464 - NZ_CP027002.1 [Ruminococcus] gnavus ATCC 29149
175 640640 640819 + NZ_CP009761.1 Parvimonas micra
176 945011 945193 + NZ_CP067016.1 Anaerococcus obesiensis
177 329710 329892 + NZ_CP066014.1 Anaerococcus vaginalis
178 485928 486110 - NZ_CP016953.1 Streptococcus himalayensis
179 6059549 6059734 + NZ_AP019308.1 Paenibacillus baekrokdamisoli
180 1484503 1484685 - NZ_CP017786.1 Bacillus xiamenensis
181 117153 117335 + NZ_CP011150.1 Bacillus altitudinis
182 1401569 1401751 - NZ_CP043404.1 Bacillus safensis
183 4039760 4039942 - NZ_CP016020.1 Bacillus weihaiensis
184 145723 145905 + NZ_CP042593.1 Bacillus dafuensis
185 2420086 2420271 + NZ_CP043474.1 Mycobacterium grossiae
186 4226387 4226572 + NZ_CP048286.1 Paenibacillus rhizovicinus
187 1973321 1973500 - NC_014925.1 Staphylococcus pseudintermedius HKU10-03
188 4838048 4838233 - NZ_CP045293.1 Paenibacillus guangzhouensis
189 139123 139305 + NZ_CP065425.1 Heyndrickxia vini
190 1853312 1853494 - NZ_LR134275.1 Streptococcus vestibularis
191 1908050 1908232 - NZ_AP014612.1 Streptococcus troglodytae
192 2575324 2575506 + NZ_CP070062.1 Coprococcus comes
193 1055201 1055383 - NZ_CP022315.1 Virgibacillus phasianinus
194 1165111 1165293 - NZ_LR134341.1 Streptococcus pseudoporcinus
195 2749950 2750126 + NZ_LR134441.1 Kaistella antarctica
196 128127 128315 + NZ_CP012152.1 Anoxybacillus gonensis
197 3912234 3912416 - NZ_AP018165.1 [Mycobacterium] stephanolepidis
198 1484151 1484336 - NZ_CP014334.1 Fervidobacterium islandicum
199 1674838 1675017 + NZ_LR134352.1 Nocardia asteroides
200 84888 85067 + NZ_LR134512.1 Streptococcus agalactiae
201 4219135 4219317 + NZ_CP061725.1 Micromonospora craniellae
202 2570480 2570662 - NZ_CP011361.2 Salimicrobium jeotgali
203 1757710 1757892 + NZ_CP013237.1 Streptococcus mutans
204 1185555 1185734 + NZ_CP011491.1 Mycolicibacterium vaccae 95051
205 1426472 1426651 + NC_008726.1 Mycolicibacterium vanbaalenii PYR-1
206 1754743 1754919 - NZ_LR134484.1 Gemella haemolysans
207 677303 677485 + NZ_CP043405.1 Streptococcus ratti
208 1222990 1223166 - NZ_LR134523.1 Peptoniphilus ivorii
209 330969 331148 + NZ_CP054482.1 Macrococcus bohemicus
210 394523 394702 + NZ_CP019698.1 Desulfotomaculum ferrireducens
211 2807055 2807234 - NZ_AP022608.1 Mycolicibacterium gadium
212 5572386 5572565 + NZ_AP022601.1 Mycobacterium gallinarum
213 2535201 2535383 - NZ_CP013862.1 Lentibacillus amyloliquefaciens
214 7056697 7056891 + NZ_CP035758.1 Ktedonosporobacter rubrisoli
215 186526 186702 - NZ_CP046314.1 Gemella morbillorum
216 750939 751118 - NZ_CP053988.1 Abiotrophia defectiva
217 221509 221694 - NZ_CP034437.1 Paenibacillus albus
218 1445578 1445757 - NC_022538.1 Acholeplasma palmae J233
219 134847 135029 + NZ_CP032365.1 Bacillus wiedmannii
220 2795191 2795373 + NZ_CP011058.1 Paenibacillus beijingensis
221 1307381 1307560 + NZ_LS483464.1 Corynebacterium renale
222 52682 52834 - NZ_CP015438.1 Anoxybacillus amylolyticus
223 1994621 1994800 + NZ_AP023172.1 Rhodococcus qingshengii
224 3696207 3696389 + NZ_CP013118.1 Salinivirga cyanobacteriivorans
225 996942 997127 + NZ_CP007389.1 Thermosipho melanesiensis
226 2174875 2175054 + NZ_CP014699.1 Streptococcus pantholopis
227 1755743 1755895 + NZ_CP043611.1 Paenibacillus antarcticus
228 852944 853123 + NZ_CP018082.1 Nocardia mangyaensis
229 1748359 1748541 - NZ_CP041305.1 Cytobacillus ciccensis
230 6407618 6407803 - NZ_AP022579.1 Mycolicibacterium boenickei
231 1621222 1621404 + NZ_CP048000.1 Anaerocolumna sedimenticola
232 3272629 3272817 + NZ_CP064060.1 Anoxybacillus caldiproteolyticus
233 1504621 1504806 + NZ_CP011269.1 Mycolicibacterium fortuitum
234 444137 444319 - NZ_CP032620.1 Streptococcus koreensis
235 450750 450902 + NZ_CP008944.1 Corynebacterium atypicum
236 3436774 3436962 - NZ_CP012502.1 Bacillus beveridgei
237 1755639 1755821 - NZ_LS483436.1 Streptococcus intermedius
238 2029754 2029936 - NZ_LR594049.1 Streptococcus gordonii
239 163978 164160 - NZ_CP022437.1 Virgibacillus necropolis
240 94483 94665 + NZ_LS483383.1 Streptococcus cristatus ATCC 51100
241 770110 770289 + NZ_CP032364.1 Lachnoanaerobaculum umeaense
242 246298 246477 + NZ_CP047361.1 Macrococcus canis
243 2350162 2350338 - NZ_CP014229.1 Desulfovibrio fairfieldensis
244 136506 136688 + NZ_LS483476.1 Lederbergia lentus
245 1109050 1109202 - NZ_CP014635.1 Corynebacterium simulans
246 2733883 2734062 - NZ_CP034549.1 Nonlabens ponticola
247 78836 79018 + NZ_LR594046.1 Streptococcus dysgalactiae
248 136301 136453 + NZ_CP019699.1 Novibacillus thermophilus
249 2237826 2237978 - NZ_CP067012.1 Corynebacterium kefirresidentii
250 1824993 1825172 - NZ_CP032627.1 Lactococcus allomyrinae
251 509618 509773 + NZ_CP030280.1 Blautia argi
252 3729188 3729367 + NZ_CP035492.1 Paenibacillus protaetiae
253 48713 48895 - NZ_CP020772.1 Halobacillus mangrovi
254 2274503 2274673 - NC_007519.1 Desulfovibrio alaskensis G20
255 146889 147071 + NZ_CP012024.1 Bacillus smithii
256 44229 44381 - NZ_CP039710.1 Thermoactinomyces vulgaris
257 1098884 1099063 - NZ_AP022599.1 Mycolicibacterium pulveris
258 1990619 1990798 + NZ_CP065729.1 Macrococcus caseolyticus
259 3617892 3618074 - NZ_CP024633.1 Mycobacteroides salmoniphilum
260 3991120 3991302 - NZ_AP022612.1 Mycolicibacterium confluentis
261 3070552 3070701 - NZ_CP048104.1 Kroppenstedtia pulmonis
262 2510859 2511014 - NZ_CP022413.2 Blautia hansenii DSM 20583
263 3239868 3240050 - NZ_CP040058.1 Anaerostipes rhamnosivorans
264 372653 372835 + NZ_CP036345.1 Anaerostipes caccae L1-92
265 1195767 1195949 - NZ_AP022615.1 Mycobacterium heidelbergense
266 1244016 1244201 + NC_011653.1 Thermosipho africanus TCF52B
267 852021 852203 + NZ_CP015196.1 Streptococcus marmotae
268 642794 642976 + NZ_AP022613.1 Mycobacterium conspicuum
269 136607 136789 + NZ_CP024035.1 Priestia aryabhattai
270 1157126 1157308 + NZ_CP018044.1 Bifidobacterium choerinum
271 2952333 2952521 + NZ_AP022562.1 Mycobacterium novum
272 3530641 3530829 - NC_015576.1 Mycolicibacter sinensis
273 553456 553635 - NZ_AP022606.1 Mycobacterium branderi
274 1138818 1138997 + NZ_LR134356.1 Mycolicibacterium aurum
275 2432176 2432358 - NZ_CP017704.1 Peribacillus simplex NBRC 15720 = DSM 1321
276 2258615 2258794 - NZ_LT906477.1 Clostridium cochlearium
277 1404956 1405126 + NC_017310.1 Desulfovibrio vulgaris RCH1
278 5523691 5523870 - NZ_AP022574.1 Mycolicibacterium psychrotolerans
279 73270 73452 + NZ_CP010450.1 Streptococcus pyogenes
280 626051 626227 + NC_017583.1 Spirochaeta thermophila DSM 6578
281 1204434 1204613 + NC_020127.1 Lawsonia intracellularis N343
282 100138 100320 + NZ_CP029491.1 Streptococcus sobrinus
283 4362283 4362465 - NZ_CP022657.1 Tumebacillus algifaecis
284 644800 644979 - NZ_CP020773.1 Staphylococcus lutrae
285 498138 498320 + NZ_CP022680.1 Streptococcus respiraculi
286 2583965 2584147 - NZ_AP019309.1 Intestinibaculum porci
287 1987262 1987441 + NZ_LT990039.1 Massilistercora timonensis
288 699242 699424 + NZ_LT635772.1 Anaerococcus mediterraneensis
289 3976474 3976653 - NZ_CP027793.1 Rhodococcus hoagii
290 5085641 5085796 - NZ_CP039126.1 Blautia producta
291 617414 617605 + NC_009828.1 Pseudothermotoga lettingae TMO
292 610577 610768 + NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921
293 644180 644359 + NZ_AP022605.1 Mycobacterium doricum
294 504687 504839 - NC_017079.1 Caldilinea aerophila DSM 14535 = NBRC 104270
295 2686410 2686592 - NZ_AP022576.1 Mycobacterium florentinum
296 2362741 2362929 + NZ_CP031092.1 Salicibibacter kimchii
297 3531008 3531187 - NZ_AP022563.1 Mycolicibacterium duvalii
298 1696652 1696831 + NZ_AP022570.1 Mycolicibacterium poriferae
299 3249445 3249624 - NZ_AP022586.1 Mycolicibacterium litorale
300 2117303 2117482 - NZ_CP017267.1 Vagococcus teuberi
301 2015636 2015824 - NC_012785.1 Kosmotoga olearia TBF 19.5.1
302 312512 312691 + NC_015589.1 Desulfotomaculum ruminis DSM 2154
303 456592 456768 + NZ_LR215048.1 Acholeplasma axanthum
304 1466461 1466616 - NC_016630.1 Filifactor alocis ATCC 35896
305 2814396 2814575 - NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532
306 1837807 1837983 - NZ_CP034159.1 Kaistella carnis
307 766462 766647 - NZ_CP068161.1 Corynebacterium propinquum
308 4176086 4176265 + NZ_CP014337.1 Elizabethkingia bruuniana
309 4984506 4984688 - NZ_CP040336.1 Bacillus luti
310 134926 135108 + NZ_CP064875.1 Bacillus toyonensis
311 2055351 2055530 - NZ_CP021874.1 Enterococcus wangshanyuanii
312 248296 248448 + NZ_CP048103.1 Kroppenstedtia eburnea
313 2544095 2544274 - NZ_CP015067.2 Elizabethkingia anophelis
314 2484749 2484928 + NZ_AP022588.1 Mycolicibacterium sediminis
315 2072200 2072388 - NZ_CP035485.1 Salicibibacter halophilus
316 138571 138753 + NZ_CP024848.1 Oceanobacillus zhaokaii
317 1327911 1328084 + NC_012881.1 Maridesulfovibrio salexigens DSM 2638
318 129483 129665 + NC_007530.2 Bacillus anthracis str. 'Ames Ancestor'
319 135128 135310 + NC_011725.1 Bacillus cereus B4264
320 2573992 2574174 - NZ_CP015961.1 Dietzia timorensis
321 171418 171600 - NZ_CP028811.1 Flavobacterium magnum
322 135792 135974 + NZ_CP024109.1 Bacillus cytotoxicus
323 81649 81831 + NC_012924.1 Streptococcus suis SC84
324 590283 590462 - NC_020156.1 Nonlabens dokdonensis DSW-6
325 1141067 1141246 + NZ_CP049887.1 Vagococcus hydrophili
326 2986718 2986900 - NC_016001.1 Flavobacterium branchiophilum FL-15
327 2605546 2605728 - NC_015385.1 Treponema succinifaciens DSM 2489
328 2525576 2525758 - NZ_CP015449.1 Dietzia lutea
329 165037 165225 + NC_014829.1 Evansella cellulosilytica DSM 2522
330 1201857 1202027 + NZ_CP017703.1 Aeribacillus pallidus
331 2131718 2131897 - NZ_CP029256.1 Christensenella minuta
332 570167 570349 - NZ_CP049740.1 Jeotgalibaca arthritidis
333 1054862 1055041 + NZ_LT906483.1 Mycolicibacterium thermoresistibile
334 1215389 1215574 - NC_009718.1 Fervidobacterium nodosum Rt17-B1
335 2581613 2581795 + NZ_CP030926.1 Peribacillus butanolivorans
336 398181 398366 + NZ_CP044496.1 Lactobacillus acetotolerans
337 152311 152496 + NC_017668.1 Halobacillus halophilus DSM 2266
338 425714 425890 - NC_015501.1 Porphyromonas asaccharolytica DSM 20707
339 2829869 2830021 + NZ_CP061470.1 Geobacillus zalihae
340 2259992 2260144 - NZ_CP061472.1 Geobacillus thermoleovorans
341 340783 340938 + NZ_LN879430.1 Herbinix luporum
342 3181067 3181243 + NZ_CP022986.1 Chryseobacterium camelliae
343 1795577 1795759 + NZ_CP021434.1 Tumebacillus avium
344 70590 70769 + NC_020207.1 Enterococcus faecium ATCC 8459 = NRRL B-2354
345 2926458 2926640 - NZ_AP022587.1 Mycobacterium stomatepiae
346 2373058 2373237 - NZ_CP023434.1 Suicoccus acidiformans
347 4764792 4764998 + NZ_AP022573.1 Mycobacterium saskatchewanense
348 2890540 2890722 - NZ_AP022609.1 Mycolicibacter hiberniae
349 136217 136369 + NC_006510.1 Geobacillus kaustophilus HTA426
350 162931 163113 - NZ_CP029187.1 Flavobacterium pallidum
351 136966 137118 - NZ_CP018058.1 Geobacillus thermocatenulatus
352 3985377 3985565 - NZ_CP019659.1 Paenibacillus larvae subsp. larvae
353 261196 261375 + NC_020995.1 Enterococcus casseliflavus EC20
354 510500 510679 + NZ_CP016843.1 Carnobacterium divergens
355 2738410 2738586 - NZ_CP050995.1 Chryseobacterium gallinarum
356 4025194 4025370 - NZ_CP033914.1 Chryseobacterium shandongense
357 2426065 2426244 - NZ_AP022822.1 Enterococcus saigonensis
358 2069192 2069371 - NZ_LT906473.1 Corynebacterium cystitidis
359 3403692 3403871 + NZ_CP037933.1 Flavobacterium nackdongense
360 581987 582166 - NZ_CP023011.2 Enterococcus hirae
361 440850 441026 + NZ_CP023863.1 Prevotella jejuni
362 74995 75174 + NZ_CP023074.1 Enterococcus thailandicus
363 77697 77876 + NZ_CP065211.1 Enterococcus lactis
364 2690845 2691027 - NZ_CP068053.1 Peribacillus psychrosaccharolyticus
365 217562 217741 - NZ_CP014230.1 Desulfomicrobium orale DSM 12838
366 2344877 2345059 - NC_013223.1 Desulfohalobium retbaense DSM 5692
367 1163450 1163632 + NZ_AP018712.1 Tepiditoga spiralis
368 7656380 7656562 - NC_014666.1 Frankia inefficax
369 2502184 2502369 - NZ_CP036150.1 Oceanispirochaeta crateris
370 3512060 3512242 - NZ_LT906469.1 Mycolicibacter terrae
371 501209 501394 + NZ_LT906467.1 Corynebacterium imitans
372 1876782 1876946 + NZ_CP011232.1 Kosmotoga pacifica
373 323342 323509 + NZ_CP009215.1 Corynebacterium ureicelerivorans
374 240417 240596 + NC_009253.1 Desulfotomaculum reducens MI-1
375 2527786 2527962 - NC_014033.1 Prevotella ruminicola 23
376 243739 243918 + NZ_LS483306.1 Enterococcus cecorum
377 402476 402628 + NZ_CP019688.1 Corynebacterium glaucum
378 2352227 2352385 + NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
379 5051157 5051336 + NZ_AP022616.1 Mycolicibacterium phocaicum
380 2195478 2195657 - NZ_AP022577.1 Mycolicibacterium aubagnense
381 4694783 4694962 - NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
382 826548 826730 - NZ_CP017774.1 Flavobacterium commune
383 399071 399253 - NC_009441.1 Flavobacterium johnsoniae UW101
384 244162 244341 + NC_008593.1 Clostridium novyi NT
385 4056304 4056459 - NC_014376.1 [Clostridium] saccharolyticum WM1
386 4041821 4042000 - NZ_CP007145.1 Hymenobacter swuensis DY53
387 2012276 2012449 - NC_015436.1 Sphaerochaeta coccoides DSM 17374
388 4068289 4068468 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
389 191633 191815 - NZ_CP017479.1 Flavobacterium gilvum
390 2873024 2873203 - NZ_CP014170.1 Clostridium tyrobutyricum
391 4679732 4679926 - NZ_AP022561.1 Mycolicibacterium aichiense
392 1839524 1839700 + NZ_CP033924.1 Chryseobacterium lactis
393 2419603 2419782 - NZ_LR590481.1 Hathewaya histolytica
394 3165955 3166134 + NZ_CP018061.1 Enterococcus mundtii
395 1295090 1295248 + NZ_CP023643.1 Brochothrix thermosphacta
396 2434742 2434924 + NZ_CP016907.1 Flavobacterium anhuiense
397 2353546 2353728 + NZ_CP043612.1 Flavobacterium nitrogenifigens
398 406606 406788 - NZ_CP029255.1 Flavobacterium crocinum
399 2514867 2515058 + NZ_AP022595.1 Mycolicibacterium sarraceniae
400 2393500 2393685 - NZ_AP021889.1 Thiosulfatimonas sediminis
401 1182854 1183036 + NZ_CP017688.1 Flavobacterium crassostreae
402 4493631 4493810 - NC_014393.1 Clostridium cellulovorans 743B
403 1878827 1879003 - NZ_LR215974.1 Chryseobacterium taihuense
404 751913 752089 + NZ_CP033929.1 Chryseobacterium indoltheticum
405 2745147 2745323 - NZ_CP023049.2 Chryseobacterium piperi
406 1510824 1511000 - NZ_CP015199.1 Chryseobacterium glaciei
407 810931 811107 - NZ_CP033920.1 Chryseobacterium carnipullorum
408 471010 471177 - NZ_CP038157.1 Corynebacterium sanguinis
409 2719431 2719613 - NZ_CP015453.1 Dietzia psychralcaliphila
410 2069985 2070164 - NZ_CP012395.1 Clostridium autoethanogenum DSM 10061
411 4437215 4437394 - NC_014328.1 Clostridium ljungdahlii DSM 13528
412 385562 385747 + NZ_CP026948.1 Corynebacterium liangguodongii
413 2278968 2279153 - NC_015520.1 Mahella australiensis 50-1 BON
414 222155 222334 + NC_011837.1 Clostridium kluyveri NBRC 12016
415 511419 511598 + NZ_CP016502.1 Acetivibrio thermocellus DSM 2360
416 450676 450852 + NC_014370.1 Prevotella melaninogenica ATCC 25845
417 1730030 1730212 + NZ_CP020918.1 Flavobacterium faecale
418 115255 115434 + NZ_CP019573.1 Abyssicoccus albus
419 1548041 1548229 + NC_015681.1 Thermodesulfatator indicus DSM 15286
420 188691 188873 + NZ_CP018258.1 Dehalogenimonas formicexedens
421 297739 297921 + NZ_CP018180.1 Liquorilactobacillus nagelii
422 1123375 1123554 - NC_014330.1 Brachyspira pilosicoli 95/1000
423 1848705 1848884 - NZ_CP050954.1 Hymenobacter sp. BT18
424 1007319 1007495 + NZ_LR130759.1 Mycobacterium basiliense
425 2252277 2252462 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
426 2216852 2217031 - NC_022369.1 Lactococcus lactis subsp. cremoris KW2
427 352576 352764 - NZ_LS974202.1 Mesotoga infera
428 3684434 3684610 + NZ_CP033926.1 Chryseobacterium joostei
429 703930 704106 + NZ_LR134386.1 Chryseobacterium nakagawai
430 3928822 3929001 - NZ_CP013019.1 Clostridium pasteurianum
431 1819136 1819312 - NZ_CP035130.1 Gudongella oleilytica
432 2653760 2653939 - NZ_HG917868.1 Clostridium bornimense
433 6081776 6081946 + NC_018025.1 Desulfomonile tiedjei DSM 6799
434 2102590 2102745 - NZ_CP059567.1 Neisseria shayeganii
435 4459959 4460138 + NZ_AP022567.1 Mycolicibacterium mageritense
436 1703925 1704101 + NZ_CP033932.1 Chryseobacterium bernardetii
437 4048465 4048641 + NZ_LR134289.1 Chryseobacterium gleum
438 1216789 1216971 - NC_013522.1 Thermanaerovibrio acidaminovorans DSM 6589
439 749933 750115 - NZ_CP034465.1 Jeotgalibaca ciconiae
440 1282296 1282475 - NZ_CP019914.1 Brachyspira hampsonii
441 1921330 1921515 - NC_020813.1 Bdellovibrio exovorus JSS
442 2252796 2252975 + NZ_CP046932.1 Brachyspira hyodysenteriae
443 2826753 2826929 - NZ_LR134384.1 Prevotella oris
444 1717811 1717987 - NZ_LR134503.1 Kaistella jeonii
445 2868883 2869062 - NC_017243.1 Brachyspira intermedia PWS/A
446 43940 44089 + NZ_AP014569.1 Serpentinomonas mccroryi
447 1105192 1105347 + NZ_CP031699.1 Neisseria animalis
448 2893968 2894129 - NZ_AP018437.1 Pelolinea submarina
449 4125534 4125704 + NZ_LT907975.1 Pseudodesulfovibrio profundus
450 447640 447825 + NC_015732.1 Treponema caldarium DSM 7334
451 1980258 1980437 + NZ_LT906465.1 Chryseobacterium taklimakanense
452 730703 730867 + NC_008609.1 Pelobacter propionicus DSM 2379
453 1350320 1350502 + NZ_CP038810.1 Flavobacterium sangjuense
454 789558 789734 + NC_013525.1 Thermobaculum terrenum ATCC BAA-798
455 159850 160029 + NZ_CP041666.1 Radiobacillus deserti
456 5281008 5281187 - NZ_CP020953.1 Clostridium drakei
457 4643014 4643193 + NZ_CP009933.1 Clostridium scatologenes
458 3259100 3259276 - NZ_CP034161.1 Epilithonimonas vandammei
459 3276868 3277050 + NZ_CP017478.1 Urechidicola croceus
460 1137946 1138122 - NC_017045.1 Riemerella anatipestifer ATCC 11845 = DSM 15868
461 471363 471545 + NZ_CP022544.1 Bifidobacterium pseudolongum
462 387191 387361 + NZ_AP020335.1 Hydrogenovibrio marinus
463 4430638 4430817 - NZ_CP011803.1 Clostridium carboxidivorans P7
464 3317516 3317674 - NZ_AP022614.1 Mycobacterium parmense
465 3227228 3227410 + NZ_CP042476.1 Antarcticibacterium arcticum
466 2611192 2611362 + NZ_CP046400.1 Pseudodesulfovibrio cashew
467 2108950 2109129 + NC_014150.1 Brachyspira murdochii DSM 12563
468 443906 444070 + NZ_CP054020.1 Thiomicrorhabdus xiamenensis
469 32989 33171 - NZ_CP070872.1 Lactococcus taiwanensis
470 864379 864558 + NZ_CP061336.1 Ruminiclostridium herbifermentans
471 453741 453899 + NZ_CP035033.1 Hydrogenovibrio thermophilus
472 974198 974350 + NC_013501.1 Rhodothermus marinus DSM 4252
473 3536283 3536465 - NC_015577.1 Treponema azotonutricium ZAS-9
474 3450797 3450979 + NC_016599.1 Owenweeksia hongkongensis DSM 17368
475 370429 370587 + NZ_CP040602.1 Thiomicrorhabdus sediminis
476 1203984 1204145 + NZ_CP059565.1 Neisseria wadsworthii
477 491188 491370 + NZ_CP029331.1 Thauera hydrothermalis
478 1455247 1455426 + NZ_CP015125.1 Dokdonia donghaensis DSW-1
479 1300546 1300728 + NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
480 2693228 2693410 + NZ_CP058277.1 Mycobacterium marinum
481 2737687 2737869 + NZ_AP022572.1 Mycobacterium shottsii
482 140281 140469 + NC_015581.1 Thiomicrospira cyclica ALM1
483 448383 448559 + NZ_AP017378.1 Desulfovibrio ferrophilus
484 2451235 2451414 - NZ_AP022565.1 Mycolicibacterium alvei
485 2954817 2954978 - NZ_CP045875.1 Heliorestis convoluta
486 253554 253742 + NZ_CP034235.1 Paenibacillus psychroresistens
487 2768380 2768568 - NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
488 2269585 2269764 - NZ_CP019288.1 Kordia antarctica
489 481339 481518 + NZ_AP024085.1 Faecalibacillus intestinalis
490 3143837 3144007 - NC_013173.1 Desulfomicrobium baculatum DSM 4028
491 412078 412260 + NZ_CP048436.1 Flavonifractor plautii
492 1561304 1561486 - NZ_CP047141.1 Ligilactobacillus animalis
493 1125678 1125851 + NC_014960.1 Anaerolinea thermophila UNI-1
494 462176 462340 + NZ_CP033040.1 Thiomicrorhabdus indica
495 278932 279111 + NC_022549.1 Acholeplasma brassicae
496 1470291 1470473 - NZ_CP019728.1 Jeotgalibaca dankookensis
497 621863 622015 - NZ_CP009312.1 Lawsonella clevelandensis
498 2064749 2064928 + NC_018013.1 Aequorivita sublithincola DSM 14238
499 669283 669465 + NC_017025.1 Flavobacterium indicum GPTSA100-9 = DSM 17447
500 36006 36155 + NZ_AP014568.1 Serpentinomonas raichei
501 4162564 4162746 - NC_014041.1 Zunongwangia profunda SM-A87
502 2218548 2218700 + NZ_CP020046.1 Thiomonas intermedia
503 2941738 2941917 + NZ_CP045696.1 Sodaliphilus pleomorphus
504 616173 616373 + NZ_CP024645.1 Rhizobacter gummiphilus
505 3350366 3350524 - NZ_CP064338.1 Schlegelella thermodepolymerans
506 1717409 1717603 + NZ_CP014228.1 Actinomyces radicidentis
507 4493951 4494130 - NC_016627.1 Acetivibrio clariflavus DSM 19732
508 1319276 1319443 + NZ_CP031500.1 Deinococcus radiodurans
509 437569 437754 + NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571
510 274887 275066 + NZ_CP032416.1 Clostridium fermenticellae
511 704832 705011 - NC_014934.1 Cellulophaga algicola DSM 14237
512 259841 260020 + NZ_CP016786.1 Clostridium isatidis
513 2789681 2789836 - NC_008639.1 Chlorobium phaeobacteroides DSM 266
514 3262890 3263063 - NC_015687.1 Clostridium acetobutylicum DSM 1731
515 4164428 4164610 + NZ_CP025791.1 Flavivirga eckloniae
516 903175 903354 + NC_011898.1 Ruminiclostridium cellulolyticum H10
517 92593 92766 + NC_010163.1 Acholeplasma laidlawii PG-8A
518 1289911 1290096 - NC_013203.1 Lancefieldella parvulum DSM 20469
519 1148201 1148368 - NZ_CP011389.1 Deinococcus soli (ex Cha et al. 2016)
520 2670020 2670187 - NZ_CP013910.1 Deinococcus actinosclerus
521 1539557 1539733 - NZ_AP018042.1 Labilibaculum antarcticum
522 180161 180346 + NZ_LN824141.1 Defluviitoga tunisiensis
523 2986377 2986553 + NC_014734.1 Paludibacter propionicigenes WB4
524 114748 114933 + NZ_LT635455.1 Olsenella timonensis
525 2049166 2049348 + NZ_CP039934.1 Myroides fluvii
526 2249490 2249675 - NZ_CP047602.1 Thermoanaerobacterium aotearoense
527 361380 361565 + NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11
528 246478 246663 + NZ_AP019367.1 Parolsenella catena
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP019870.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00406.24 0.69 365 1826.0 same-strand Adenylate kinase
2 PF13207.8 0.69 365 1826.0 same-strand AAA domain
3 PF00344.22 0.9 476 474 same-strand SecY
4 PF00828.21 0.99 523 23.0 same-strand Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
5 PF00333.22 1.0 526 14 same-strand Ribosomal protein S5, N-terminal domain
6 PF03719.17 1.0 525 14.0 same-strand Ribosomal protein S5, C-terminal domain
7 PF00861.24 0.99 522 539 same-strand Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
8 PF00347.25 1.0 527 934.0 same-strand Ribosomal protein L6
9 PF00410.21 1.0 527 1507.0 same-strand Ribosomal protein S8
10 PF00253.23 0.85 446 1940 same-strand Ribosomal protein S14p/S29e
++ More..