Result : Q182G1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | AM180355.1 |
| Organism | Clostridioides difficile (strain 630) (Peptoclostridium difficile) |
| Left | 2854576 |
| Right | 2854842 |
| Strand | + |
| Nucleotide Sequence | GTGGCAAATATAAAATCAGCTAAGAAAAGAATAAGTGTTATCGAAAAGAAAACTGCTTTAAATAGAGTTAGAAAATCTCAAATAAAAACTGCAATAAGAAGATTCGAAGATGCTGTTGCAGCTGGAAACAGAGAGGATGCTGTTGCTAAGTTCCAATACGCTCAAAAAAGAATATACCAAGTAGCTTCTAAAGGAACTATACATAAGAATGCTGCAGCTAGAAAAGTAGCTAAATTAGCTCAAAAATTAAACGGTATGAACGCTTAA |
| Sequence | MANIKSAKKRISVIEKKTALNRVRKSQIKTAIRRFEDAVAAGNREDAVAKFQYAQKRIYQVASKGTIHKNAAARKVAKLAQKLNGMNA |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 16804543 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q182G1 |
| ORF Length (Amino Acid) | 88 |
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| Conservation Analysis |
No. of Species: 60
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1310360 | 1310626 | - | NZ_CP019870.1 | Clostridioides difficile |
| 2 | 1943747 | 1944013 | + | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 3 | 617310 | 617576 | - | NZ_CP014150.1 | Paeniclostridium sordellii |
| 4 | 1932889 | 1933158 | + | NC_014614.1 | Acetoanaerobium sticklandii |
| 5 | 1444089 | 1444361 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 6 | 685994 | 686257 | + | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 7 | 1325601 | 1325864 | - | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 8 | 470409 | 470684 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 9 | 3090325 | 3090588 | + | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 10 | 2649903 | 2650166 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 11 | 2464086 | 2464349 | + | NZ_CP009687.1 | Clostridium aceticum |
| 12 | 1982122 | 1982385 | + | NZ_CP016786.1 | Clostridium isatidis |
| 13 | 1911957 | 1912220 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 14 | 974007 | 974270 | - | NZ_CP043998.1 | Clostridium diolis |
| 15 | 472908 | 473174 | - | NZ_CP020953.1 | Clostridium drakei |
| 16 | 3774083 | 3774349 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 17 | 5244179 | 5244445 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 18 | 879717 | 879980 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 19 | 2948989 | 2949252 | + | NZ_CP030775.1 | Clostridium butyricum |
| 20 | 1641457 | 1641717 | + | NZ_HG917868.1 | Clostridium bornimense |
| 21 | 530998 | 531261 | + | NZ_CP023671.1 | Clostridium septicum |
| 22 | 2548089 | 2548352 | + | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 23 | 1418990 | 1419256 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 24 | 2335015 | 2335281 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 25 | 1981373 | 1981636 | + | NZ_CP014204.2 | Clostridium baratii |
| 26 | 1628655 | 1628918 | + | NZ_LR590481.1 | Hathewaya histolytica |
| 27 | 1734268 | 1734528 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 28 | 1853290 | 1853556 | + | NZ_CP067016.1 | Anaerococcus obesiensis |
| 29 | 1238471 | 1238737 | + | NZ_CP066014.1 | Anaerococcus vaginalis |
| 30 | 1002107 | 1002370 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 31 | 2036282 | 2036545 | + | NZ_CP048649.1 | Aminipila butyrica |
| 32 | 895200 | 895466 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 33 | 3359032 | 3359298 | + | NZ_CP011663.1 | Clostridium sporogenes |
| 34 | 1195561 | 1195824 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 35 | 1388144 | 1388407 | + | NZ_CP035130.1 | Gudongella oleilytica |
| 36 | 1778048 | 1778305 | + | NZ_LT906477.1 | Clostridium cochlearium |
| 37 | 565071 | 565334 | - | NZ_LR134523.1 | Peptoniphilus ivorii |
| 38 | 1723165 | 1723431 | + | NC_008593.1 | Clostridium novyi NT |
| 39 | 3126925 | 3127191 | + | NZ_CP028842.1 | Clostridium botulinum |
| 40 | 1007591 | 1007863 | + | NZ_CP027228.1 | Mogibacterium diversum |
| 41 | 3125387 | 3125653 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 42 | 875801 | 876067 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 43 | 1085717 | 1085983 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 44 | 2791442 | 2791708 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 45 | 1382678 | 1382941 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 46 | 2956820 | 2957086 | + | NZ_CP014176.1 | Clostridium argentinense |
| 47 | 2491396 | 2491662 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 48 | 1293178 | 1293444 | - | NZ_CP040924.1 | Clostridium thermarum |
| 49 | 2858396 | 2858659 | + | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 50 | 664146 | 664409 | - | NZ_CP029256.1 | Christensenella minuta |
| 51 | 1552283 | 1552558 | + | NC_013939.1 | Deferribacter desulfuricans SSM1 |
| 52 | 1749763 | 1750029 | + | NC_015520.1 | Mahella australiensis 50-1 BON |
| 53 | 1974129 | 1974395 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 54 | 1815113 | 1815364 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 55 | 966673 | 966936 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 56 | 3827086 | 3827352 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 57 | 2147980 | 2148246 | + | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 58 | 1720294 | 1720554 | - | NZ_CP018044.1 | Bifidobacterium choerinum |
| 59 | 2463673 | 2463936 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 60 | 531603 | 531857 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_009922.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03772.18 | 0.8 | 48 | 1137.0 | opposite-strand | Competence protein |
| 2 | PF06144.15 | 0.87 | 52 | 75.5 | opposite-strand | DNA polymerase III, delta subunit |
| 3 | PF07454.13 | 0.65 | 39 | 1339 | opposite-strand | Stage II sporulation protein P (SpoIIP) |
| 4 | PF04055.23 | 0.62 | 37 | 4848 | opposite-strand | Radical SAM superfamily |
| 5 | PF06969.18 | 0.6 | 36 | 4867.0 | opposite-strand | HemN C-terminal domain |
| 6 | PF00009.29 | 0.9 | 54 | 3013 | opposite-strand | Elongation factor Tu GTP binding domain |
| 7 | PF06421.14 | 0.87 | 52 | 2960.0 | opposite-strand | GTP-binding protein LepA C-terminus |
| 8 | PF00679.26 | 0.9 | 54 | 2960.0 | opposite-strand | Elongation factor G C-terminus |
| 9 | PF03144.27 | 0.88 | 53 | 3015.0 | opposite-strand | Elongation factor Tu domain 2 |
| 10 | PF01926.25 | 0.85 | 51 | 3015.0 | opposite-strand | 50S ribosome-binding GTPase |
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