ProsmORF-pred
Result : Q164D1
Protein Information
Information Type Description
Protein name 50S ribosomal protein L32
NCBI Accession ID CP000362.1
Organism Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
Left 3028104
Right 3028310
Strand +
Nucleotide Sequence ATGGCTGTTCAACAGAACAAAGTCTCCAAATCGCGCCGCAACAACCGTCGCGCGCACGATTCGCTGGTCGCAGCAAACCCGAATGAATGCACCAACTGTGGCGAGCTGAAACGCCCCCACCATATCTGTGCCGCCTGCGGACACTATGACGATAAAGAAGTCGTGGCGCTGACAGAAGAGATTGATCTGGAAGACGACGCAGCCTAA
Sequence MAVQQNKVSKSRRNNRRAHDSLVAANPNECTNCGELKRPHHICAACGHYDDKEVVALTEEIDLEDDAA
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pubmed ID 17098896
Domain CDD:415589
Functional Category Ribosomal_protein
Uniprot ID Q164D1
ORF Length (Amino Acid) 68
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 201
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1051224 1051430 + NZ_CP027407.1 Roseobacter denitrificans
2 2441445 2441651 + NC_015730.1 Roseobacter litoralis Och 149
3 1509007 1509213 - NZ_CP048788.1 Roseobacter ponti
4 2188389 2188595 + NZ_CP054599.1 Sulfitobacter pseudonitzschiae
5 770862 771068 + NZ_CP051181.1 Thalassobius gelatinovorus
6 1840558 1840764 + NZ_CP015230.1 Epibacterium mobile F1926
7 2641872 2642078 + NC_003911.12 Ruegeria pomeroyi DSS-3
8 779739 779945 + NZ_CP049037.1 Pseudohalocynthiibacter aestuariivivens
9 1122257 1122463 - NZ_CP041159.1 Leisingera aquaemixtae
10 2093993 2094199 + NC_023135.1 Leisingera methylohalidivorans DSM 14336
11 2626138 2626344 + NZ_CP024899.1 Rhodobaca barguzinensis
12 1163949 1164155 + NZ_CP045201.1 Pseudopuniceibacterium antarcticum
13 1942996 1943202 + NZ_CP010855.1 Marinovum algicola DG 898
14 707125 707331 - NZ_CP060436.1 Pseudooceanicola algae
15 1133243 1133449 - NZ_CP016364.1 Phaeobacter porticola
16 3566397 3566603 - NZ_CP015093.1 Salipiger abyssi
17 250317 250523 - NZ_CP039965.1 Pseudorhodobacter turbinis
18 1800247 1800453 + NZ_CP003984.1 Planktomarina temperata RCA23
19 1158060 1158266 - NZ_CP010650.1 Phaeobacter inhibens
20 2275404 2275610 + NZ_CP021047.1 Phaeobacter gallaeciensis
21 1107130 1107336 + NZ_CP061498.1 Roseicitreum antarcticum
22 3176559 3176768 + NZ_CP015421.1 Rhodovulum sulfidophilum
23 1313964 1314170 + NZ_CP042261.1 Qingshengfaniella alkalisoli
24 2770334 2770540 + NZ_CP038439.1 Paracoccus liaowanqingii
25 1314913 1315119 - NZ_CP012908.1 Ketogulonicigenium vulgare
26 1908713 1908913 - NZ_CP033219.1 Parasedimentitalea marina
27 1150431 1150637 + NZ_CP019937.1 Ketogulonicigenium robustum
28 3853657 3853863 + NZ_CP040818.1 Paraoceanicella profunda
29 261459 261665 - NZ_CP020470.1 Rhodobacter blasticus
30 1988215 1988421 + NZ_CP034348.1 Roseovarius faecimaris
31 553396 553602 - NZ_CP022196.1 Celeribacter ethanolicus
32 4160704 4160910 - NZ_CP034328.1 Tabrizicola piscis
33 1785846 1786052 + NC_009952.1 Dinoroseobacter shibae DFL 12 = DSM 16493
34 1990848 1991054 + NZ_CP035510.1 Haematobacter massiliensis
35 2790836 2791042 + NZ_CP019437.1 Thioclava nitratireducens
36 1394513 1394719 - NZ_CP021404.1 Pacificitalea manganoxidans
37 2491429 2491635 + NZ_CP012661.1 Defluviimonas alba
38 2631019 2631225 + NZ_CP053562.1 Thioclava electrotropha
39 1453868 1454074 - NZ_CP065915.1 Pelagovum pacificum
40 265985 266191 + NZ_CP025430.1 Paracoccus zhejiangensis
41 2737309 2737515 + NC_020911.1 Octadecabacter antarcticus 307
42 2065919 2066125 + NZ_LN832559.1 Paracoccus aminovorans
43 2674036 2674242 + NZ_CP004393.1 Celeribacter indicus
44 1384765 1384971 - NZ_CP061202.1 Rhodobacter capsulatus
45 140183 140389 + NZ_CP024422.1 Paracoccus yeei
46 1723039 1723245 - NZ_CP034588.1 Silicimonas algicola
47 1360884 1361090 + NZ_CP045072.1 Paracoccus kondratievae
48 3192208 3192414 - NZ_CP014327.1 Halocynthiibacter arcticus
49 1078830 1079036 - NC_022041.1 Paracoccus aminophilus JCM 7686
50 1144064 1144270 - NZ_CP025583.1 Paracoccus jeotgali
51 1830728 1830934 - NZ_CP030918.1 Paracoccus suum
52 17985 18191 + NZ_CP020612.1 Paracoccus contaminans
53 1913129 1913338 + NZ_CP032125.1 Profundibacter amoris
54 2445671 2445877 - NZ_CP004372.1 Roseibacterium elongatum DSM 19469
55 2404913 2405119 + NC_020908.1 Octadecabacter arcticus 238
56 1832776 1832982 + NZ_CP012160.1 Octadecabacter temperatus
57 300222 300428 - NZ_CP012023.1 Celeribacter marinus
58 1741032 1741214 + NZ_CP014525.1 Haematospirillum jordaniae
59 1551855 1552058 + NZ_CP044117.1 Roseomonas mucosa
60 2226730 2226912 + NZ_AP019700.1 Stella humosa
61 1243941 1244126 + NZ_CP029353.1 Azospirillum thermophilum
62 2123065 2123253 - NZ_CP054619.1 Azospirillum oryzae
63 2021358 2021546 + NZ_CP012401.1 Azospirillum thiophilum
64 1574868 1575050 - NZ_CP030126.1 Indioceanicola profundi
65 4796897 4797082 + NZ_CP030265.1 Skermanella pratensis
66 1204701 1204889 - NC_023065.1 Magnetospirillum gryphiswaldense MSR-1 v2
67 1560686 1560877 + NZ_CP022110.1 Nitrospirillum amazonense CBAmc
68 2503337 2503513 + NZ_CP020083.1 Blastomonas fulva
69 2557118 2557300 + NC_007626.1 Magnetospirillum magneticum AMB-1
70 1601762 1601941 - NZ_CP053015.1 Sphingomonas lacunae
71 1292070 1292249 + NZ_CP060052.1 Croceicoccus marinus
72 705122 705310 + NZ_CP029829.1 Azospirillum ramasamyi
73 1956259 1956444 + NC_017584.1 Rhodospirillum rubrum F11
74 442707 442886 - NZ_CP053921.1 Erythrobacter mangrovi
75 4376911 4377090 + NZ_CP010836.1 Sphingomonas hengshuiensis
76 1696425 1696637 - NZ_CP014689.1 Gluconobacter albidus
77 1977511 1977708 + NZ_CP051131.1 Parasphingopyxis algicola
78 981282 981461 - NZ_CP011452.2 Croceibacterium atlanticum
79 2910463 2910642 - NZ_CP035765.1 Sphingomonas paucimobilis
80 1329320 1329502 - NZ_CP037948.1 Qipengyuania sediminis
81 1555259 1555438 - NZ_CP011805.1 Pelagerythrobacter marensis
82 1836028 1836207 + NZ_CP016591.1 Tsuneonella dongtanensis
83 1950491 1950670 - NC_006526.2 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
84 895185 895364 - NZ_CP022889.1 Tsuneonella mangrovi
85 2516040 2516219 - NC_007794.1 Novosphingobium aromaticivorans DSM 12444
86 2052681 2052863 - NZ_CP016545.1 Paraurantiacibacter namhicola
87 699778 699957 - NZ_CP022745.1 Sphingobium xenophagum
88 2422914 2423093 + NZ_CP023705.1 Sphingomonas melonis
89 1419168 1419353 - NZ_CP026328.2 Acidithiobacillus caldus
90 2515516 2515695 - NZ_CP060035.1 Sphingobium fuliginis
91 1742962 1743165 - NZ_CP042808.1 Acetobacter oryzoeni
92 641168 641371 - NC_021991.1 Acetobacter pasteurianus 386B
93 1395646 1395849 - NZ_CP015164.1 Acetobacter ascendens
94 1965937 1966140 - NZ_CP022374.1 Acetobacter oryzifermentans
95 89918 90097 + NZ_CP042306.1 Sphingomonas panacisoli
96 2214549 2214731 - NZ_CP011310.1 Aurantiacibacter atlanticus
97 3717708 3717887 + NZ_AP017655.1 Sphingobium cloacae
98 2948786 2948965 - NZ_CP042345.1 Novosphingobium ginsenosidimutans
99 3218329 3218508 + NC_014006.1 Sphingobium japonicum UT26S
100 3849881 3850060 - NZ_CP009571.1 Sphingomonas taxi
101 1136158 1136340 - NC_017059.1 Pararhodospirillum photometricum DSM 122
102 2361632 2361835 + NZ_CP029176.1 Acidibrevibacterium fodinaquatile
103 75057 75236 - NZ_CP034179.1 Caenibius tardaugens NBRC 16725
104 82873 83049 - NZ_CP016033.1 Erythrobacter neustonensis
105 344230 344433 - NC_015186.1 Acidiphilium multivorum AIU301
106 2100356 2100535 + NZ_CP020538.1 Sphingobium herbicidovorans
107 2313017 2313196 - NZ_AP019389.1 Qipengyuania flava
108 2535175 2535354 - NZ_CP031357.1 Erythrobacter aureus
109 3915249 3915428 + NC_009511.1 Sphingomonas wittichii RW1
110 1276465 1276644 + NZ_CP015963.1 Altererythrobacter ishigakiensis
111 134965 135177 - NZ_CP068419.1 Gluconobacter sphaericus
112 134645 134857 - NZ_CP004373.1 Gluconobacter oxydans DSM 3504
113 2544446 2544625 - NZ_CP060717.1 Sphingomonas rhizophila
114 1593344 1593523 - NZ_CP012669.1 Altererythrobacter epoxidivorans
115 1177006 1177209 + NZ_AP014690.1 Asaia bogorensis NBRC 16594
116 1173982 1174164 + NZ_CP017057.1 Erythrobacter litoralis
117 2979542 2979745 + NZ_LN606600.1 Acetobacter senegalensis
118 1473583 1473762 - NC_008048.1 Sphingopyxis alaskensis RB2256
119 5366660 5366839 + NZ_CP006644.1 Sphingomonas sanxanigenens DSM 19645 = NX02
120 2459327 2459506 + NZ_CP024920.1 Qipengyuania seohaensis
121 1216211 1216414 - NZ_CP036404.1 Komagataeibacter saccharivorans
122 4578120 4578299 - NZ_CP061038.1 Sphingomonas alpina
123 588105 588284 + NZ_CP009291.1 Novosphingobium pentaromativorans US6-1
124 969534 969737 + NZ_CP014681.1 Kozakia baliensis
125 1542477 1542656 - NZ_CP018221.1 Tardibacter chloracetimidivorans
126 3375831 3376034 - NZ_CP043043.1 Gluconobacter thailandicus
127 1061168 1061371 - NC_016027.1 Komagataeibacter medellinensis NBRC 3288
128 875448 875651 - NZ_CP019875.1 Komagataeibacter nataicola
129 2298754 2298957 - NZ_CP050139.1 Komagataeibacter rhaeticus
130 1387710 1387889 + NZ_CP009122.1 Sphingopyxis fribergensis
131 3052309 3052488 - NZ_CP009429.1 Sphingopyxis macrogoltabida
132 1353164 1353367 + NZ_CP062147.1 Komagataeibacter hansenii
133 1951888 1952067 - NZ_CP045434.1 Sphingomonas ginsengisoli An et al. 2013
134 1812295 1812474 + NZ_CP049740.1 Jeotgalibaca arthritidis
135 2315011 2315190 + NZ_CP034465.1 Jeotgalibaca ciconiae
136 1154979 1155191 + NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4
137 938269 938448 + NZ_CP041659.1 Sphingomonas xanthus
138 570419 570598 + NZ_CP045562.1 Fructilactobacillus fructivorans
139 1140408 1140590 - NZ_CP014872.1 Fructilactobacillus lindneri
140 617435 617614 - NZ_CP060718.1 Sphingomonas lutea
141 4600859 4601038 - NZ_CP023449.1 Rhizorhabdus dicambivorans
142 837141 837320 + NZ_CP060780.1 Sphingomonas daechungensis
143 1504173 1504355 - NZ_CP018800.1 Mariprofundus ferrinatatus
144 1498170 1498349 + NZ_CP014168.1 Sphingomonas panacis
145 133703 133906 - NZ_CP032485.1 Neokomagataea tanensis
146 1548425 1548607 - NC_013740.1 Acidaminococcus fermentans DSM 20731
147 3997549 3997722 - NZ_CP018622.1 Virgibacillus dokdonensis
148 72063 72242 + NZ_CP060782.1 Sphingomonas sediminicola
149 1844657 1844869 + NZ_CP060244.1 Entomobacter blattae
150 1579599 1579781 + NZ_CP027783.1 Tetragenococcus osmophilus
151 2774579 2774764 + NZ_AP018795.1 Acidithiobacillus ferridurans
152 1661322 1661507 + NC_011761.1 Acidithiobacillus ferrooxidans ATCC 23270
153 984332 984517 + NZ_CP045571.1 Acidithiobacillus thiooxidans ATCC 19377
154 128608 128811 - NZ_CP038141.1 Swingsia samuiensis
155 1455052 1455237 + NC_015942.1 Acidithiobacillus ferrivorans SS3
156 1406103 1406282 + NZ_CP014163.1 Aerococcus urinaehominis
157 1052505 1052684 + NZ_CP017267.1 Vagococcus teuberi
158 1709678 1709851 + NZ_CP024848.1 Oceanobacillus zhaokaii
159 1694794 1694976 - NZ_CP012047.1 Tetragenococcus halophilus
160 3399830 3400015 + NZ_CP041636.1 Ferrovibrio terrae
161 1947656 1947835 - NZ_CP016843.1 Carnobacterium divergens
162 1731515 1731694 - NZ_AP022822.1 Enterococcus saigonensis
163 441333 441512 + NZ_CP019728.1 Jeotgalibaca dankookensis
164 2177879 2178052 - NZ_CP017962.1 Virgibacillus halodenitrificans
165 1494765 1494938 + NC_004193.1 Oceanobacillus iheyensis HTE831
166 851166 851348 + NZ_CP018799.1 Mariprofundus aestuarium
167 575049 575228 - NZ_CP037940.1 Weissella cryptocerci
168 1473534 1473707 + NZ_CP041666.1 Radiobacillus deserti
169 286215 286391 + NZ_CP013862.1 Lentibacillus amyloliquefaciens
170 1599842 1600015 + NZ_CP029797.1 Paraliobacillus zengyii
171 790930 791106 + NZ_CP047141.1 Ligilactobacillus animalis
172 1526838 1527011 - NZ_LS483306.1 Enterococcus cecorum
173 1644357 1644530 - NC_018704.1 Amphibacillus xylanus NBRC 15112
174 768359 768547 + NZ_LR134523.1 Peptoniphilus ivorii
175 406708 406887 - NZ_CP053988.1 Abiotrophia defectiva
176 1184474 1184647 + NZ_CP008876.1 Terribacillus goriensis
177 621077 621259 + NZ_CP045563.1 Fructilactobacillus sanfranciscensis
178 1751670 1751852 + NC_002939.5 Geobacter sulfurreducens PCA
179 725284 725457 + NZ_CP045927.1 Staphylococcus agnetis
180 1788692 1788865 - NZ_CP008747.1 Staphylococcus hyicus
181 1775742 1775924 + NZ_CP009788.1 Geobacter pickeringii
182 1206868 1207050 - NZ_LT632322.1 Murdochiella vaginalis
183 3370820 3370993 - NZ_CP014616.1 Sporosarcina psychrophila
184 2355137 2355316 - NC_015172.1 Syntrophobotulus glycolicus DSM 8271
185 1130103 1130282 + NZ_CP046996.1 Dehalobacter restrictus
186 1372908 1373087 - NZ_LT906446.1 Megamonas hypermegale
187 402507 402686 + NZ_CP015519.1 Syntrophotalea acetylenivorans
188 47802 47978 + NZ_LR130778.1 Petrocella atlantisensis
189 1269641 1269823 + NZ_CP025286.1 Ethanoligenens harbinense YUAN-3
190 1565799 1565981 - NZ_LR588407.1 Brevundimonas vancanneytii
191 1043854 1044036 - NZ_LR134524.1 Peptoniphilus harei
192 717763 717942 - NZ_CP031376.1 Spiroplasma alleghenense
193 3221884 3222066 + NZ_CP022048.2 Brevundimonas vesicularis
194 1681429 1681605 + NC_007498.2 Syntrophotalea carbinolica DSM 2380
195 2777768 2777947 - NC_009633.1 Alkaliphilus metalliredigens QYMF
196 1901972 1902148 + NZ_CP036259.1 Sporomusa termitida
197 1557793 1557969 + NC_009922.1 Alkaliphilus oremlandii OhILAs
198 964064 964240 + NZ_CP036523.1 Peptacetobacter hiranonis
199 2393360 2393542 - NC_014833.1 Ruminococcus albus 7 = DSM 20455
200 32541 32723 + NZ_HF545617.1 Ruminococcus bicirculans
201 1514336 1514515 - NZ_LT906482.1 Eikenella corrodens
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP027407.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF02620.19 0.65 130 154.0 same-strand Large ribosomal RNA subunit accumulation protein YceD
2 PF02504.17 0.81 163 34 same-strand Fatty acid synthesis protein
3 PF08541.12 0.8 160 1132.0 same-strand 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
4 PF08545.12 0.8 160 1132.0 same-strand 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
5 PF00216.23 0.68 137 2228 same-strand Bacterial DNA-binding protein
6 PF13411.8 0.67 134 2547.0 same-strand MerR HTH family regulatory protein
7 PF00376.25 0.65 130 2545.5 same-strand MerR family regulatory protein
++ More..