Result : Q15UY5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0434 protein Patl_1782 |
| NCBI Accession ID | CP000388.1 |
| Organism | Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) |
| Left | 2141841 |
| Right | 2142044 |
| Strand | + |
| Nucleotide Sequence | ATGGCGTTTGATAAAAAACTACTGGAAATCGTAGCCTGTCCTGTGTGCAAAGGTACGCTTATTTTAAACAAAGACAGCAATGGTAATGAACGCTTGGTATGTCGTTTCGATCGTTTAGCTTATCCAATCGAGCAAAATATCCCAGTGTTGCTTGAAACAGAAGCACTGGTGCTATCAAGCGAAGAACTAGAAAAAATTAAATAG |
| Sequence | MAFDKKLLEIVACPVCKGTLILNKDSNGNERLVCRFDRLAYPIEQNIPVLLETEALVLSSEELEKIK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01066. Profile Description: Trm112p-like protein. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C-terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. |
| Pubmed ID | |
| Domain | CDD:412721 |
| Functional Category | Others |
| Uniprot ID | Q15UY5 |
| ORF Length (Amino Acid) | 67 |
++ More..
| Conservation Analysis |
No. of Species: 359
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2271715 | 2271921 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 2 | 2017909 | 2018103 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 3 | 4074791 | 4074985 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 4 | 2258102 | 2258296 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 5 | 1572681 | 1572860 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 6 | 2075780 | 2075974 | + | NZ_CP008849.1 | Alteromonas australica |
| 7 | 2533363 | 2533557 | - | NZ_CP014322.1 | Alteromonas addita |
| 8 | 1681814 | 1682008 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 9 | 2847796 | 2847972 | - | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 10 | 3122353 | 3122529 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 11 | 2428489 | 2428674 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 12 | 2704174 | 2704362 | + | NZ_CP014056.2 | Grimontia hollisae |
| 13 | 1226143 | 1226349 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 14 | 1649502 | 1649681 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 15 | 2596706 | 2596894 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 16 | 471127 | 471315 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 17 | 676934 | 677122 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 18 | 2703065 | 2703241 | - | NZ_CP041036.1 | Shewanella polaris |
| 19 | 1632573 | 1632758 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 20 | 3455819 | 3456001 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 21 | 1637724 | 1637903 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 22 | 2553777 | 2553956 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 23 | 2951870 | 2952043 | - | NZ_CP020472.1 | Shewanella japonica |
| 24 | 2854032 | 2854220 | - | NZ_CP028897.1 | Dongshaea marina |
| 25 | 2234353 | 2234532 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 26 | 1508644 | 1508829 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 27 | 367904 | 368092 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 28 | 1190165 | 1190338 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 29 | 2375563 | 2375736 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 30 | 1468408 | 1468593 | - | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 31 | 1965987 | 1966184 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 32 | 993398 | 993577 | + | NZ_CP030788.1 | Vibrio campbellii |
| 33 | 2038292 | 2038471 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 34 | 789562 | 789741 | - | NZ_CP019959.1 | Vibrio owensii |
| 35 | 1279244 | 1279423 | + | NZ_CP009467.1 | Vibrio harveyi |
| 36 | 1178760 | 1178939 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 37 | 2228005 | 2228184 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 38 | 2100241 | 2100411 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 39 | 1592495 | 1592674 | + | NZ_CP040990.1 | Vibrio furnissii |
| 40 | 1679162 | 1679359 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 41 | 1368702 | 1368887 | - | NZ_CP025120.1 | Kangiella profundi |
| 42 | 1860069 | 1860248 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 43 | 3659899 | 3660096 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 44 | 1019634 | 1019813 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 45 | 1448565 | 1448744 | + | NZ_CP046268.1 | Vibrio spartinae |
| 46 | 1491421 | 1491600 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 47 | 99774 | 99956 | - | NZ_LR134418.1 | Legionella adelaidensis |
| 48 | 97617 | 97808 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 49 | 2155015 | 2155188 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 50 | 1972023 | 1972217 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 51 | 38682 | 38861 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 52 | 374654 | 374842 | + | NZ_CP044060.1 | Aeromonas veronii |
| 53 | 627388 | 627576 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 54 | 585616 | 585804 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 55 | 1874859 | 1875047 | - | NZ_CP040449.1 | Aeromonas simiae |
| 56 | 1096643 | 1096831 | - | NZ_LS483250.1 | Moritella yayanosii |
| 57 | 802154 | 802339 | + | NZ_CP038254.1 | Legionella israelensis |
| 58 | 1877726 | 1877905 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 59 | 1722683 | 1722871 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 60 | 1708755 | 1708955 | + | NZ_AP022188.1 | Aeromonas media |
| 61 | 2547547 | 2547726 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 62 | 2210004 | 2210183 | - | NC_011753.2 | Vibrio atlanticus |
| 63 | 2174491 | 2174670 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 64 | 2630233 | 2630412 | - | NC_013456.1 | Vibrio antiquarius |
| 65 | 2083525 | 2083704 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 66 | 118274 | 118462 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 67 | 3021047 | 3021220 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 68 | 2599172 | 2599342 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 69 | 72676 | 72873 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 70 | 689039 | 689218 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 71 | 1534941 | 1535123 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 72 | 2221556 | 2221753 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 73 | 1180327 | 1180506 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 74 | 1939055 | 1939234 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 75 | 2915677 | 2915865 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 76 | 1510523 | 1510702 | - | NZ_LR699119.1 | Aquicella siphonis |
| 77 | 1811438 | 1811635 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 78 | 1757963 | 1758160 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 79 | 1620986 | 1621183 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 80 | 2252494 | 2252670 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 81 | 1737140 | 1737334 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 82 | 1875668 | 1875847 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 83 | 2608316 | 2608486 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 84 | 3413044 | 3413226 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 85 | 2056010 | 2056189 | + | NC_016901.1 | Shewanella baltica OS678 |
| 86 | 987868 | 988044 | + | NZ_LR699114.1 | Aquicella lusitana |
| 87 | 1807265 | 1807462 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 88 | 1824283 | 1824465 | + | NZ_LR134494.1 | Serratia quinivorans |
| 89 | 3145006 | 3145188 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 90 | 1021517 | 1021696 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 91 | 2325231 | 2325410 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 92 | 1532169 | 1532348 | - | NZ_CP035688.1 | Vibrio metoecus |
| 93 | 2885653 | 2885832 | + | NZ_CP026364.1 | Proteus hauseri |
| 94 | 792440 | 792619 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 95 | 1829950 | 1830132 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 96 | 2306836 | 2307015 | - | NZ_AP014635.1 | Vibrio tritonius |
| 97 | 550594 | 550773 | - | NZ_CP037953.1 | Permianibacter aggregans |
| 98 | 3922743 | 3922940 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 99 | 807890 | 808087 | - | NC_011313.1 | Aliivibrio salmonicida LFI1238 |
| 100 | 1831544 | 1831723 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 101 | 1896498 | 1896695 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 102 | 1718686 | 1718883 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 103 | 1991259 | 1991456 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 104 | 4540766 | 4540948 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 105 | 1857606 | 1857788 | + | NZ_LT906479.1 | Serratia ficaria |
| 106 | 44686 | 44868 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 107 | 1296249 | 1296431 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 108 | 1065862 | 1066047 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 109 | 1806160 | 1806339 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 110 | 1708439 | 1708621 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 111 | 1125411 | 1125590 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 112 | 1684658 | 1684837 | - | NZ_AP019657.1 | Vibrio ponticus |
| 113 | 4249093 | 4249275 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 114 | 3001868 | 3002047 | - | NZ_LS483422.1 | Providencia heimbachae |
| 115 | 1865040 | 1865219 | + | NZ_CP046378.1 | Shewanella algae |
| 116 | 3482261 | 3482443 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 117 | 3239536 | 3239706 | + | NZ_CP065640.1 | Serratia rubidaea |
| 118 | 3118350 | 3118529 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 119 | 3396084 | 3396269 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 120 | 2341259 | 2341426 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 121 | 1659361 | 1659543 | + | NZ_CP026377.1 | Mixta gaviniae |
| 122 | 1035575 | 1035742 | + | NZ_LN614830.1 | Tatlockia micdadei |
| 123 | 2787413 | 2787592 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 124 | 943300 | 943467 | + | NZ_LN681225.1 | Legionella hackeliae |
| 125 | 1258467 | 1258646 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 126 | 1933146 | 1933340 | - | NZ_AP014936.1 | Sulfurifustis variabilis |
| 127 | 2694492 | 2694674 | - | NZ_CP038853.1 | Pantoea vagans |
| 128 | 2928416 | 2928598 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 129 | 1795558 | 1795737 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 130 | 1767376 | 1767558 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 131 | 818496 | 818678 | + | NZ_CP028271.1 | Mixta intestinalis |
| 132 | 1777734 | 1777910 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 133 | 4853707 | 4853898 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 134 | 39665 | 39847 | - | NZ_CP019706.1 | Pantoea alhagi |
| 135 | 3232088 | 3232270 | - | NZ_CP071320.1 | Serratia ureilytica |
| 136 | 1581584 | 1581766 | + | NZ_CP061511.1 | Mixta calida |
| 137 | 1273697 | 1273861 | - | NZ_LR134374.1 | Legionella spiritensis |
| 138 | 538088 | 538267 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 139 | 426586 | 426756 | + | NZ_CP067057.1 | Rahnella aceris |
| 140 | 1818515 | 1818697 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 141 | 1377071 | 1377253 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 142 | 2747127 | 2747309 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 143 | 3166234 | 3166422 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 144 | 1359553 | 1359735 | + | NZ_AP014879.1 | Sulfuricaulis limicola |
| 145 | 978083 | 978274 | + | NZ_CP072793.1 | Thiothrix unzii |
| 146 | 1807889 | 1808068 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 147 | 1767961 | 1768140 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 148 | 1727153 | 1727350 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 149 | 1912353 | 1912550 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 150 | 1124503 | 1124685 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 151 | 2179059 | 2179238 | + | NZ_CP029736.1 | Providencia rettgeri |
| 152 | 735658 | 735837 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 153 | 2976835 | 2977017 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 154 | 2446257 | 2446445 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 155 | 1546603 | 1546785 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 156 | 2123652 | 2123819 | - | NZ_LT906451.1 | Legionella lansingensis |
| 157 | 2940473 | 2940664 | - | NC_015572.1 | Methylomonas methanica MC09 |
| 158 | 1475467 | 1475661 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 159 | 2335920 | 2336111 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 160 | 3407824 | 3408015 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 161 | 2037903 | 2038100 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 162 | 1681166 | 1681348 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 163 | 2272103 | 2272291 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 164 | 1644571 | 1644753 | + | NZ_LR134340.1 | Escherichia marmotae |
| 165 | 3680715 | 3680897 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 166 | 4478888 | 4479070 | + | NZ_CP033744.1 | Citrobacter freundii |
| 167 | 3229988 | 3230170 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 168 | 3861626 | 3861808 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 169 | 2153718 | 2153882 | - | NZ_CP013742.1 | Legionella pneumophila |
| 170 | 3371735 | 3371917 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 171 | 3123122 | 3123301 | - | NZ_CP048796.1 | Providencia vermicola |
| 172 | 2640630 | 2640800 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 173 | 2322528 | 2322698 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 174 | 2694344 | 2694526 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 175 | 3700332 | 3700520 | + | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 176 | 1847857 | 1848039 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 177 | 993375 | 993557 | + | NZ_AP014857.1 | Escherichia albertii |
| 178 | 3273699 | 3273881 | - | NZ_CP023525.1 | Cedecea neteri |
| 179 | 1470936 | 1471118 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 180 | 954470 | 954640 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 181 | 970673 | 970855 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 182 | 1385305 | 1385487 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 183 | 1100316 | 1100498 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 184 | 4375561 | 4375731 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 185 | 3010738 | 3010920 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 186 | 2338954 | 2339130 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 187 | 1546011 | 1546193 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 188 | 1678819 | 1678995 | + | NZ_CP050150.1 | Hafnia alvei |
| 189 | 843416 | 843595 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 190 | 2597383 | 2597565 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 191 | 4024974 | 4025156 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 192 | 1161432 | 1161629 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 193 | 912679 | 912864 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 194 | 4295143 | 4295316 | + | NZ_CP036200.1 | Shewanella maritima |
| 195 | 2570145 | 2570315 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 196 | 2860944 | 2861123 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 197 | 2406974 | 2407156 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 198 | 2840408 | 2840590 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 199 | 3412036 | 3412218 | + | NZ_CP007230.1 | Yersinia similis |
| 200 | 2884508 | 2884690 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 201 | 320135 | 320314 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 202 | 531108 | 531293 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 203 | 3843485 | 3843667 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 204 | 3190185 | 3190367 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 205 | 4301649 | 4301831 | + | NZ_CP049115.1 | Pantoea stewartii |
| 206 | 2831379 | 2831561 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 207 | 458231 | 458410 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 208 | 2488387 | 2488569 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 209 | 1120422 | 1120604 | - | NZ_CP009787.1 | Yersinia rohdei |
| 210 | 1013549 | 1013731 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 211 | 4028641 | 4028823 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 212 | 1824870 | 1825052 | + | NZ_CP043727.1 | Yersinia canariae |
| 213 | 1798554 | 1798736 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 214 | 1301574 | 1301756 | + | NZ_CP032487.1 | Yersinia hibernica |
| 215 | 2252294 | 2252473 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 216 | 1608416 | 1608613 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 217 | 3983925 | 3984107 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 218 | 2748658 | 2748840 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 219 | 1466352 | 1466534 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 220 | 3878645 | 3878830 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 221 | 2161679 | 2161861 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 222 | 137772 | 137948 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 223 | 1699874 | 1700053 | - | NZ_CP033078.1 | Vibrio zhugei |
| 224 | 1694977 | 1695159 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 225 | 3483281 | 3483460 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 226 | 1772281 | 1772454 | + | NZ_CP037951.1 | Parashewanella tropica |
| 227 | 2363882 | 2364079 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 228 | 2834930 | 2835124 | + | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 229 | 1823497 | 1823694 | + | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 230 | 1725862 | 1726071 | - | NZ_LR134167.1 | Avibacterium volantium |
| 231 | 3077500 | 3077676 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 232 | 1084715 | 1084897 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 233 | 2162843 | 2163031 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 234 | 1284741 | 1284920 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 235 | 2814200 | 2814382 | - | NZ_CP046293.1 | Yersinia intermedia |
| 236 | 3914496 | 3914687 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 237 | 3632708 | 3632890 | - | NZ_CP054254.1 | Klebsiella variicola |
| 238 | 1132450 | 1132629 | + | NC_008709.1 | Psychromonas ingrahamii 37 |
| 239 | 2234318 | 2234500 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 240 | 895815 | 895997 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 241 | 670261 | 670473 | + | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 242 | 1576965 | 1577144 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 243 | 1933018 | 1933200 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 244 | 1459678 | 1459857 | + | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 245 | 1502575 | 1502772 | - | NZ_CP018804.1 | Histophilus somni |
| 246 | 2117610 | 2117789 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 247 | 4015354 | 4015536 | + | NZ_CP011254.1 | Serratia fonticola |
| 248 | 2159750 | 2159932 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 249 | 1837922 | 1838119 | + | NZ_CP041352.1 | Casimicrobium huifangae |
| 250 | 2348395 | 2348577 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 251 | 3015361 | 3015543 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 252 | 2092390 | 2092572 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 253 | 2063621 | 2063791 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 254 | 3689525 | 3689707 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 255 | 826828 | 827007 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 256 | 2921670 | 2921852 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 257 | 2874080 | 2874271 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 258 | 2981516 | 2981698 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 259 | 1483580 | 1483762 | + | NZ_LS483470.1 | Leminorella richardii |
| 260 | 2207076 | 2207258 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 261 | 1692350 | 1692535 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 262 | 3855203 | 3855385 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 263 | 3379203 | 3379385 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 264 | 3033273 | 3033452 | + | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 265 | 3649344 | 3649526 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 266 | 320145 | 320327 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 267 | 1120258 | 1120446 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 268 | 3479368 | 3479550 | - | NZ_CP041247.1 | Raoultella electrica |
| 269 | 2500678 | 2500866 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 270 | 3036704 | 3036886 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 271 | 1889273 | 1889455 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 272 | 3595455 | 3595637 | + | NZ_CP026047.1 | Raoultella planticola |
| 273 | 1707112 | 1707294 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 274 | 2466931 | 2467113 | - | NZ_LR134531.1 | Pragia fontium |
| 275 | 1792280 | 1792459 | - | NZ_LT615228.1 | Polynucleobacter necessarius |
| 276 | 2822827 | 2823027 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 277 | 278516 | 278695 | - | NZ_CP007501.1 | Polynucleobacter duraquae |
| 278 | 1632514 | 1632696 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 279 | 2593547 | 2593726 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 280 | 897853 | 898035 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 281 | 3767633 | 3767815 | - | NZ_CP050508.1 | Raoultella terrigena |
| 282 | 1190240 | 1190422 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 283 | 3415998 | 3416180 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 284 | 1984738 | 1984920 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 285 | 1991051 | 1991233 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 286 | 2114748 | 2114933 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 287 | 1359573 | 1359755 | + | NZ_CP065748.1 | Delftia lacustris |
| 288 | 3698744 | 3698923 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 289 | 1409374 | 1409556 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 290 | 1576900 | 1577085 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 291 | 1454212 | 1454394 | + | NZ_CP015581.1 | Tatumella citrea |
| 292 | 1425384 | 1425566 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 293 | 856906 | 857088 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 294 | 1973415 | 1973603 | + | NZ_CP020931.1 | Marinobacter salarius |
| 295 | 3363272 | 3363442 | - | NZ_CP027669.1 | Simplicispira suum |
| 296 | 2310095 | 2310283 | + | NZ_CP027792.1 | Pulveribacter suum |
| 297 | 1807132 | 1807311 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 298 | 1705030 | 1705215 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 299 | 1386910 | 1387092 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 300 | 2105978 | 2106163 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 301 | 879532 | 879720 | + | NZ_CP017715.1 | Marinobacter salinus |
| 302 | 3672677 | 3672862 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 303 | 2815229 | 2815411 | - | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 304 | 2774905 | 2775087 | + | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 305 | 1941599 | 1941784 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 306 | 1186462 | 1186641 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 307 | 1885819 | 1886004 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 308 | 2464974 | 2465162 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 309 | 1438240 | 1438422 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 310 | 1794935 | 1795117 | + | NZ_CP028926.1 | Pasteurella multocida |
| 311 | 2075171 | 2075353 | + | NZ_AP019755.1 | Nitrosomonas stercoris |
| 312 | 5342303 | 5342494 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 313 | 2391364 | 2391543 | - | NZ_CP011451.1 | Nitrosomonas communis |
| 314 | 4721338 | 4721511 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 315 | 1951264 | 1951443 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 316 | 1156275 | 1156457 | + | NZ_CP060790.1 | Acidovorax monticola |
| 317 | 4592098 | 4592289 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 318 | 2236303 | 2236485 | - | NC_007947.1 | Methylobacillus flagellatus KT |
| 319 | 1758711 | 1758902 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 320 | 277324 | 277515 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 321 | 1918583 | 1918762 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 322 | 1006139 | 1006327 | + | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 323 | 2002603 | 2002788 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 324 | 1832408 | 1832593 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 325 | 1440141 | 1440326 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 326 | 651043 | 651228 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 327 | 1962693 | 1962866 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 328 | 2405932 | 2406108 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 329 | 3655739 | 3655924 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 330 | 2285688 | 2285861 | + | NZ_CP035503.1 | Rhodoferax sediminis |
| 331 | 2821246 | 2821425 | + | NZ_CP021106.3 | Nitrosospira lacus |
| 332 | 6051905 | 6052090 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 333 | 2082442 | 2082633 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 334 | 664736 | 664915 | + | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 335 | 2016320 | 2016508 | - | NZ_CP011971.1 | Steroidobacter denitrificans |
| 336 | 2279935 | 2280132 | - | NZ_CP061081.1 | Marinomonas arctica |
| 337 | 562365 | 562547 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 338 | 4672370 | 4672555 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 339 | 2049773 | 2049970 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 340 | 4135198 | 4135383 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 341 | 1368070 | 1368261 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 342 | 1438413 | 1438583 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 343 | 2867146 | 2867334 | + | NZ_CP016022.1 | Ralstonia insidiosa |
| 344 | 2778799 | 2778978 | + | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 345 | 2317925 | 2318110 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 346 | 4585412 | 4585612 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 347 | 728570 | 728749 | + | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 348 | 5299410 | 5299589 | - | NZ_LR134302.1 | Achromobacter spanius |
| 349 | 2003793 | 2003990 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 350 | 1581825 | 1582019 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 351 | 2321242 | 2321424 | - | NZ_CP009788.1 | Geobacter pickeringii |
| 352 | 973847 | 974026 | + | NZ_CP014671.1 | Immundisolibacter cernigliae |
| 353 | 6405 | 6575 | + | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 354 | 913389 | 913559 | + | NZ_CP060084.1 | Teredinibacter haidensis |
| 355 | 2402530 | 2402694 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 356 | 2095865 | 2096038 | + | NC_012108.1 | Desulfobacterium autotrophicum HRM2 |
| 357 | 1197000 | 1197167 | + | NZ_CP018800.1 | Mariprofundus ferrinatatus |
| 358 | 1211737 | 1211919 | + | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 359 | 373192 | 373359 | + | NZ_CP015367.1 | Methylobacterium phyllosphaerae |
| 360 | 1041878 | 1042045 | + | NZ_CP003811.1 | Methylobacterium oryzae CBMB20 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_016041.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02348.21 | 0.85 | 305 | -3.0 | same-strand | Cytidylyltransferase |
| 2 | PF02606.16 | 0.91 | 328 | 20 | same-strand | Tetraacyldisaccharide-1-P 4'-kinase |
| 3 | PF00664.25 | 0.7 | 251 | 1062.0 | same-strand | ABC transporter transmembrane region |
| 4 | PF00005.29 | 0.7 | 252 | 1082 | same-strand | ABC transporter |
| 5 | PF03772.18 | 0.71 | 255 | 2894.5 | same-strand | Competence protein |
++ More..