Result : Q12GW3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | CP000316.1 |
| Organism | Polaromonas sp. (strain JS666 / ATCC BAA-500) |
| Left | 283578 |
| Right | 283787 |
| Strand | + |
| Nucleotide Sequence | ATGACCAAATCTACTGAACTGCGCCAAAAAGACGTTGCCGGCCTGAAAACCGAAGTCAAAGAGCTGCAAAAAGCCCACTTTGGCCTGCGTATGCAAAAAGCCACGCAGCAACTCACCAACACTTCCACGCTGCGTTCCACGCGTCGCAGCATCGCTCGCGCCAAGACCATCCTGGCCGAGACCATCGTCAAGCAAGGAGCCAAAAAATGA |
| Sequence | MTKSTELRQKDVAGLKTEVKELQKAHFGLRMQKATQQLTNTSTLRSTRRSIARAKTILAETIVKQGAKK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | 18723656 |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q12GW3 |
| ORF Length (Amino Acid) | 69 |
++ More..
| Conservation Analysis |
No. of Species: 301
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 172662 | 172865 | + | NZ_CP051461.1 | Polaromonas vacuolata |
| 2 | 219307 | 219510 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 3 | 2491591 | 2491788 | - | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 4 | 5208742 | 5208939 | + | NZ_CP065748.1 | Delftia lacustris |
| 5 | 5184640 | 5184837 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 6 | 176959 | 177156 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 7 | 3868892 | 3869089 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 8 | 415184 | 415390 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 9 | 1036565 | 1036762 | - | NZ_CP020121.1 | Comamonas kerstersii |
| 10 | 4231697 | 4231903 | - | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 11 | 2947537 | 2947734 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 12 | 3076115 | 3076312 | - | NZ_CP060790.1 | Acidovorax monticola |
| 13 | 396393 | 396590 | + | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 14 | 374874 | 375071 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 15 | 453108 | 453305 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 16 | 338646 | 338855 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 17 | 190975 | 191172 | - | NZ_CP043575.1 | Comamonas koreensis |
| 18 | 3854667 | 3854873 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 19 | 285976 | 286170 | + | NZ_CP021359.1 | Acidovorax carolinensis |
| 20 | 3144897 | 3145094 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 21 | 314569 | 314778 | + | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 22 | 410460 | 410630 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 23 | 4186226 | 4186420 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 24 | 600606 | 600812 | + | NZ_CP027792.1 | Pulveribacter suum |
| 25 | 1276474 | 1276668 | - | NZ_CP027669.1 | Simplicispira suum |
| 26 | 404961 | 405137 | + | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 27 | 1410369 | 1410563 | + | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 28 | 529249 | 529446 | - | NZ_CP027666.1 | Ottowia oryzae |
| 29 | 241570 | 241767 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 30 | 3644437 | 3644637 | - | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 31 | 651756 | 651953 | + | NZ_CP013729.1 | Roseateles depolymerans |
| 32 | 3355158 | 3355358 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 33 | 611246 | 611446 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 34 | 659088 | 659258 | + | NZ_CP040709.1 | Inhella inkyongensis |
| 35 | 2273022 | 2273225 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 36 | 4477025 | 4477222 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 37 | 221722 | 221928 | + | NZ_CP029210.1 | Aquabacterium olei |
| 38 | 2307330 | 2307542 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 39 | 1447737 | 1447931 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 40 | 1574194 | 1574388 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 41 | 3376088 | 3376282 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 42 | 1325722 | 1325892 | + | NZ_CP022423.1 | Vitreoscilla filiformis |
| 43 | 246325 | 246525 | + | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 44 | 3090222 | 3090413 | - | NZ_CP028901.1 | Algicoccus marinus |
| 45 | 1610165 | 1610356 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 46 | 3531856 | 3532050 | - | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 47 | 2995597 | 2995794 | + | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 48 | 3705968 | 3706165 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 49 | 1494443 | 1494640 | + | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 50 | 4070346 | 4070543 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 51 | 1809921 | 1810118 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 52 | 4509729 | 4509926 | - | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 53 | 2675003 | 2675200 | - | NC_021287.1 | Caballeronia insecticola |
| 54 | 3146747 | 3146944 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 55 | 3176423 | 3176620 | - | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 56 | 3293070 | 3293267 | - | NZ_CP026111.1 | Paraburkholderia terrae |
| 57 | 2389416 | 2389613 | + | NZ_CP015958.1 | Paraburkholderia caribensis |
| 58 | 3688199 | 3688396 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 59 | 5207456 | 5207647 | - | NC_010170.1 | Bordetella petrii |
| 60 | 2799282 | 2799479 | - | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 61 | 6344132 | 6344323 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 62 | 4914107 | 4914298 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 63 | 2457344 | 2457535 | - | NZ_LR134302.1 | Achromobacter spanius |
| 64 | 35499 | 35690 | + | NZ_CP043146.1 | Bordetella holmesii |
| 65 | 128364 | 128555 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 66 | 3283999 | 3284190 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 67 | 4122145 | 4122336 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 68 | 5133382 | 5133573 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 69 | 4331495 | 4331689 | - | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 70 | 2956380 | 2956577 | - | NZ_CP049134.1 | Paraburkholderia tropica |
| 71 | 5489266 | 5489460 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 72 | 250661 | 250855 | + | NZ_CP011568.3 | Pandoraea thiooxydans |
| 73 | 1472323 | 1472529 | - | NZ_CP020046.1 | Thiomonas intermedia |
| 74 | 1584603 | 1584794 | - | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 75 | 4114853 | 4115047 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 76 | 3533083 | 3533277 | - | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 77 | 36250 | 36441 | + | NC_010645.1 | Bordetella avium 197N |
| 78 | 5371580 | 5371774 | - | NZ_LT906435.1 | Pandoraea sputorum |
| 79 | 4425406 | 4425597 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 80 | 1564576 | 1564767 | - | NZ_CP021395.1 | Bordetella hinzii |
| 81 | 5015147 | 5015341 | - | NC_023018.2 | Pandoraea pnomenusa |
| 82 | 4434340 | 4434531 | + | NZ_CP019038.1 | Massilia putida |
| 83 | 58492 | 58683 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 84 | 4853135 | 4853329 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 85 | 5250145 | 5250339 | - | NZ_CP010897.2 | Pandoraea vervacti |
| 86 | 360561 | 360755 | + | NZ_CP013481.2 | Pandoraea apista |
| 87 | 1153136 | 1153330 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 88 | 4266617 | 4266808 | + | NZ_CP046904.1 | Massilia flava |
| 89 | 513237 | 513428 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 90 | 179637 | 179831 | + | NZ_CP054624.1 | Cupriavidus gilardii |
| 91 | 929297 | 929494 | + | NZ_LR134378.1 | Lautropia mirabilis |
| 92 | 2885966 | 2886163 | - | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 93 | 5751208 | 5751399 | - | NZ_CP016172.1 | Bordetella flabilis |
| 94 | 3746377 | 3746571 | - | NZ_CP039287.1 | Cupriavidus necator H16 |
| 95 | 6039440 | 6039631 | - | NZ_CP028324.1 | Massilia armeniaca |
| 96 | 2430325 | 2430516 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 97 | 5799967 | 5800161 | - | NZ_CP013480.3 | Pandoraea norimbergensis |
| 98 | 963863 | 964057 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 99 | 1001639 | 1001833 | + | NZ_CP009727.1 | Burkholderia mallei |
| 100 | 2502581 | 2502775 | + | NZ_CP035900.1 | Burkholderia glumae |
| 101 | 3497022 | 3497216 | - | NC_007651.1 | Burkholderia thailandensis E264 |
| 102 | 2028071 | 2028265 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 103 | 2004555 | 2004749 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 104 | 305465 | 305659 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 105 | 5217577 | 5217771 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 106 | 5308628 | 5308819 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 107 | 950391 | 950582 | + | NZ_CP024608.1 | Massilia violaceinigra |
| 108 | 2912910 | 2913104 | - | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 109 | 164642 | 164833 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 110 | 762972 | 763163 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 111 | 5412894 | 5413085 | + | NZ_CP040017.1 | Massilia umbonata |
| 112 | 6464271 | 6464462 | - | NZ_CP036401.1 | Massilia albidiflava |
| 113 | 2989392 | 2989586 | - | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 114 | 422968 | 423162 | + | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 115 | 335798 | 335992 | + | NZ_CP013398.1 | Burkholderia seminalis |
| 116 | 320937 | 321131 | + | NZ_CP013401.1 | Burkholderia metallica |
| 117 | 1622762 | 1622956 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 118 | 333289 | 333483 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 119 | 329314 | 329508 | + | NZ_CP045235.1 | Burkholderia cepacia |
| 120 | 326664 | 326858 | + | NC_007510.1 | Burkholderia lata |
| 121 | 415690 | 415884 | + | NZ_CP013459.1 | Burkholderia stagnalis |
| 122 | 349918 | 350112 | + | NZ_CP020737.1 | Paraburkholderia acidophila |
| 123 | 427712 | 427906 | + | NZ_CP013414.1 | Burkholderia ubonensis |
| 124 | 434608 | 434787 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 125 | 1022715 | 1022909 | + | NZ_CP041352.1 | Casimicrobium huifangae |
| 126 | 329701 | 329892 | + | NZ_CP013235.1 | Collimonas arenae |
| 127 | 442096 | 442287 | + | NZ_CP013236.1 | Collimonas pratensis |
| 128 | 716242 | 716433 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 129 | 4624657 | 4624848 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 130 | 724908 | 725099 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 131 | 137845 | 138039 | + | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 132 | 155196 | 155390 | + | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 133 | 177117 | 177311 | + | NZ_CP037993.1 | Herbaspirillum huttiense |
| 134 | 1858664 | 1858837 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 135 | 775252 | 775446 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 136 | 5886803 | 5886994 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 137 | 2784775 | 2784966 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 138 | 1574762 | 1574953 | - | NZ_CP047165.1 | Pelistega ratti |
| 139 | 3004364 | 3004555 | + | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 140 | 3412448 | 3412642 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 141 | 3085026 | 3085220 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 142 | 1579641 | 1579835 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 143 | 2084221 | 2084415 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 144 | 1753348 | 1753548 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 145 | 387886 | 388071 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 146 | 1391111 | 1391302 | - | NZ_CP034464.1 | Undibacterium parvum |
| 147 | 65363 | 65557 | + | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 148 | 487164 | 487358 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 149 | 686181 | 686375 | + | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 150 | 292914 | 293093 | + | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 151 | 3609109 | 3609300 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 152 | 60730 | 60924 | + | NZ_CP007501.1 | Polynucleobacter duraquae |
| 153 | 1149604 | 1149798 | + | NZ_LR134313.1 | Neisseria canis |
| 154 | 4568162 | 4568356 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 155 | 1518066 | 1518272 | - | NC_021291.1 | Spiribacter salinus M19-40 |
| 156 | 4221699 | 4221893 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 157 | 363608 | 363799 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 158 | 2212927 | 2213118 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 159 | 1575880 | 1576068 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 160 | 3959029 | 3959217 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 161 | 77537 | 77728 | - | NZ_LT907988.1 | Orrella dioscoreae |
| 162 | 136301 | 136492 | + | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 163 | 1929039 | 1929227 | - | NZ_CP045871.1 | Litoricola lipolytica |
| 164 | 4080497 | 4080685 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 165 | 4510721 | 4510909 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 166 | 2213140 | 2213328 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 167 | 431300 | 431488 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 168 | 1345698 | 1345871 | + | NZ_AP019755.1 | Nitrosomonas stercoris |
| 169 | 2458271 | 2458465 | - | NZ_CP014646.1 | Thauera humireducens |
| 170 | 3569827 | 3570015 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 171 | 936024 | 936224 | - | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 172 | 171801 | 171992 | + | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 173 | 1082824 | 1083015 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 174 | 3881901 | 3882071 | - | NZ_CP053069.1 | Usitatibacter rugosus |
| 175 | 2913277 | 2913462 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 176 | 1790538 | 1790714 | - | NZ_CP039887.1 | Neisseria subflava |
| 177 | 1956427 | 1956603 | + | NZ_CP039886.1 | Neisseria flavescens |
| 178 | 1388177 | 1388365 | + | NZ_CP021106.3 | Nitrosospira lacus |
| 179 | 127504 | 127698 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 180 | 1266743 | 1266919 | + | NZ_CP046027.1 | Neisseria brasiliensis |
| 181 | 2682197 | 2682373 | + | NZ_CP060414.1 | Neisseria musculi |
| 182 | 522386 | 522586 | + | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 183 | 1894459 | 1894659 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 184 | 1910420 | 1910596 | - | NZ_CP031253.1 | Neisseria lactamica |
| 185 | 1101089 | 1101265 | + | NZ_CP031699.1 | Neisseria animalis |
| 186 | 1804516 | 1804698 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 187 | 379883 | 380077 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 188 | 1695278 | 1695454 | + | NZ_LS483369.1 | Neisseria cinerea |
| 189 | 936291 | 936467 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 190 | 1726724 | 1726900 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 191 | 1055128 | 1055304 | + | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 192 | 1175029 | 1175208 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 193 | 5845124 | 5845321 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 194 | 570651 | 570827 | + | NZ_CP059564.1 | Alysiella filiformis |
| 195 | 2377980 | 2378156 | - | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 196 | 380447 | 380641 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 197 | 330888 | 331082 | + | NZ_AP018933.1 | Zymobacter palmae |
| 198 | 3372357 | 3372560 | - | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 199 | 2404644 | 2404829 | + | NC_017856.1 | Methylophaga frappieri |
| 200 | 568662 | 568868 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 201 | 200815 | 201006 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 202 | 900057 | 900236 | + | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 203 | 2171427 | 2171621 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 204 | 2106696 | 2106890 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 205 | 1673111 | 1673287 | + | NZ_CP031252.1 | Neisseria elongata |
| 206 | 108042 | 108233 | + | NZ_CP015581.1 | Tatumella citrea |
| 207 | 108396 | 108605 | - | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 208 | 2620016 | 2620207 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 209 | 124994 | 125185 | - | NC_013456.1 | Vibrio antiquarius |
| 210 | 2996135 | 2996326 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 211 | 2702241 | 2702432 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 212 | 2118064 | 2118240 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 213 | 2126781 | 2126957 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
| 214 | 620670 | 620864 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 215 | 421894 | 422085 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 216 | 418005 | 418196 | + | NZ_CP014322.1 | Alteromonas addita |
| 217 | 3728538 | 3728729 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 218 | 1521457 | 1521666 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 219 | 3419826 | 3420017 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 220 | 1896208 | 1896402 | + | NZ_CP018839.1 | Thauera chlorobenzoica |
| 221 | 2907834 | 2908028 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 222 | 2466898 | 2467077 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 223 | 427260 | 427451 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 224 | 175062 | 175253 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 225 | 4742284 | 4742475 | - | NZ_CP020472.1 | Shewanella japonica |
| 226 | 252589 | 252780 | + | NC_016901.1 | Shewanella baltica OS678 |
| 227 | 5303612 | 5303803 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 228 | 1577209 | 1577400 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 229 | 1255832 | 1256020 | + | NZ_CP064781.1 | Azospira restricta |
| 230 | 241847 | 242038 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 231 | 1659886 | 1660074 | - | NC_022664.1 | Spiribacter curvatus |
| 232 | 1199848 | 1200042 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 233 | 414260 | 414436 | + | NZ_CP025120.1 | Kangiella profundi |
| 234 | 972016 | 972210 | - | NZ_CP014056.2 | Grimontia hollisae |
| 235 | 303270 | 303461 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 236 | 3028214 | 3028405 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 237 | 3678880 | 3679071 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 238 | 1895802 | 1895981 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 239 | 2265427 | 2265621 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 240 | 468311 | 468487 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 241 | 454278 | 454469 | + | NZ_CP008849.1 | Alteromonas australica |
| 242 | 3442561 | 3442752 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 243 | 3824708 | 3824902 | - | NZ_CP016210.1 | Azoarcus olearius |
| 244 | 2452409 | 2452603 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 245 | 610734 | 610925 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 246 | 306492 | 306683 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 247 | 1774564 | 1774755 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 248 | 172416 | 172607 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 249 | 183724 | 183915 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 250 | 51665 | 51868 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 251 | 3513824 | 3514015 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 252 | 598823 | 599029 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 253 | 3859165 | 3859356 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 254 | 832736 | 832927 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 255 | 19304 | 19495 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 256 | 4307903 | 4308079 | - | NZ_CP061081.1 | Marinomonas arctica |
| 257 | 326646 | 326843 | + | NZ_CP018799.1 | Mariprofundus aestuarium |
| 258 | 233623 | 233814 | + | NZ_CP061941.1 | Marinomonas algicola |
| 259 | 255866 | 256057 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 260 | 249478 | 249681 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 261 | 3112398 | 3112589 | - | NZ_AP014635.1 | Vibrio tritonius |
| 262 | 2660442 | 2660624 | - | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 263 | 347311 | 347502 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 264 | 2278126 | 2278317 | - | NZ_CP035688.1 | Vibrio metoecus |
| 265 | 2620372 | 2620563 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 266 | 3096292 | 3096483 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 267 | 2545787 | 2545978 | - | NZ_CP033078.1 | Vibrio zhugei |
| 268 | 121350 | 121541 | - | NZ_CP040990.1 | Vibrio furnissii |
| 269 | 1787332 | 1787523 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 270 | 2975575 | 2975766 | - | NC_011753.2 | Vibrio atlanticus |
| 271 | 312625 | 312816 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 272 | 2342171 | 2342353 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 273 | 6340753 | 6340929 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 274 | 1944290 | 1944487 | - | NZ_CP018800.1 | Mariprofundus ferrinatatus |
| 275 | 639197 | 639391 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 276 | 2013232 | 2013423 | - | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 277 | 87788 | 87979 | + | NZ_CP018804.1 | Histophilus somni |
| 278 | 130896 | 131087 | - | NZ_LR134167.1 | Avibacterium volantium |
| 279 | 3298982 | 3299176 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 280 | 366385 | 366576 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 281 | 3262122 | 3262325 | - | NZ_CP053073.1 | Usitatibacter palustris |
| 282 | 2716930 | 2717121 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 283 | 2853393 | 2853584 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 284 | 3184255 | 3184446 | + | NZ_AP019657.1 | Vibrio ponticus |
| 285 | 408956 | 409147 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 286 | 280258 | 280449 | + | NZ_CP030788.1 | Vibrio campbellii |
| 287 | 255227 | 255418 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 288 | 2822526 | 2822717 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 289 | 1543835 | 1544026 | - | NZ_CP019959.1 | Vibrio owensii |
| 290 | 487958 | 488149 | + | NZ_CP009467.1 | Vibrio harveyi |
| 291 | 1956313 | 1956504 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 292 | 225578 | 225778 | - | NZ_CP034437.1 | Paenibacillus albus |
| 293 | 6313346 | 6313546 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 294 | 4222306 | 4222506 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 295 | 2851611 | 2851802 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 296 | 2979843 | 2980037 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 297 | 383174 | 383350 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 298 | 2719273 | 2719464 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 299 | 6055487 | 6055663 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 300 | 6128453 | 6128650 | - | NZ_AP019400.1 | Cohnella abietis |
| 301 | 3631379 | 3631576 | - | NZ_CP033433.1 | Cohnella candidum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011257.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03947.20 | 1.0 | 300 | 1851.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 2 | PF00181.25 | 1.0 | 300 | 1851.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 3 | PF00203.23 | 0.99 | 297 | 1561 | same-strand | Ribosomal protein S19 |
| 4 | PF00237.21 | 1.0 | 300 | 1219.0 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00189.22 | 1.0 | 301 | 429 | same-strand | Ribosomal protein S3, C-terminal domain |
| 6 | PF07650.19 | 1.0 | 301 | 429 | same-strand | KH domain |
| 7 | PF00252.20 | 0.98 | 296 | 10.0 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00366.22 | 0.99 | 299 | 0 | same-strand | Ribosomal protein S17 |
| 9 | PF00673.23 | 0.78 | 235 | 1170 | same-strand | ribosomal L5P family C-terminus |
| 10 | PF00281.21 | 0.78 | 235 | 1170 | same-strand | Ribosomal protein L5 |
| 11 | PF17136.6 | 0.79 | 237 | 844 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 12 | PF00238.21 | 0.79 | 238 | 464.5 | same-strand | Ribosomal protein L14p/L23e |
| 13 | PF00253.23 | 0.73 | 221 | 1717 | same-strand | Ribosomal protein S14p/S29e |
++ More..