Result : Q11R87
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (Asp/Glu-ADT subunit C) (EC 6.3.5.-) |
| NCBI Accession ID | CP000383.1 |
| Organism | Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465) |
| Left | 3224857 |
| Right | 3225144 |
| Strand | + |
| Nucleotide Sequence | ATGAGTTTAGATACTAAAACAATTGGAAAGATTGCGCACCTGGCGCGTCTTGAGTTTGATGATAAATCACTGGAAGCATTTTCAACAGACTTCAATAAAATTTTATCCTGGATCGATAAATTAAATGAAGTGAATACTGATAATGTAGAGCCCTTGATTCACATGAGTCATGAATTGAATGTGCTGCGTGAAGACATCGACAAAGTAACCATCAGCCACGAAGAGGCATTAAAAAATGCGCCTAAAAAAGATTCAGATTATTTCAGAGTTCCTAAATTCCTCTCATAG |
| Sequence | MSLDTKTIGKIAHLARLEFDDKSLEAFSTDFNKILSWIDKLNEVNTDNVEPLIHMSHELNVLREDIDKVTISHEEALKNAPKKDSDYFRVPKFLS |
| Source of smORF | Swiss-Prot |
| Function | Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_00122}. |
| Pubmed ID | 17400776 |
| Domain | CDD:412411 |
| Functional Category | Others |
| Uniprot ID | Q11R87 |
| ORF Length (Amino Acid) | 95 |
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| Conservation Analysis |
No. of Species: 41
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3224857 | 3225144 | + | NC_008255.1 | Cytophaga hutchinsonii ATCC 33406 |
| 2 | 1706588 | 1706875 | - | NZ_CP047984.1 | Pontibacter russatus |
| 3 | 4030947 | 4031234 | + | NZ_CP048106.1 | Pontibacter pudoricolor |
| 4 | 38493 | 38780 | + | NZ_CP021235.1 | Pontibacter actiniarum |
| 5 | 2867202 | 2867489 | + | NZ_CP014766.1 | Pontibacter akesuensis |
| 6 | 2296630 | 2296917 | + | NZ_CP009621.1 | Pontibacter korlensis |
| 7 | 4902987 | 4903274 | + | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 8 | 3188100 | 3188387 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 9 | 2796226 | 2796513 | + | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 10 | 47937 | 48224 | - | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 11 | 764560 | 764847 | + | NZ_CP012643.1 | Rufibacter tibetensis |
| 12 | 1117942 | 1118229 | - | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 13 | 3585292 | 3585579 | + | NZ_CP007145.1 | Hymenobacter swuensis DY53 |
| 14 | 1698128 | 1698415 | + | NZ_CP047897.1 | Nibribacter ruber |
| 15 | 2597283 | 2597570 | - | NC_018010.1 | Belliella baltica DSM 15883 |
| 16 | 2989708 | 2989995 | + | NZ_CP010777.1 | Rufibacter radiotolerans |
| 17 | 3282979 | 3283266 | - | NZ_CP040896.1 | Hymenobacter jejuensis |
| 18 | 1614400 | 1614687 | + | NZ_CP044285.1 | Hymenobacter baengnokdamensis |
| 19 | 1090623 | 1090910 | + | NZ_CP032382.1 | Chryseolinea soli |
| 20 | 1180037 | 1180324 | - | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 21 | 1408615 | 1408902 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 22 | 4091614 | 4091901 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 23 | 1020826 | 1021113 | - | NZ_CP037922.1 | Hymenobacter radiodurans |
| 24 | 2634589 | 2634876 | - | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 25 | 2502443 | 2502730 | - | NZ_CP040106.1 | Echinicola rosea |
| 26 | 5914471 | 5914758 | - | NZ_CP048222.1 | Rhodocytophaga rosea |
| 27 | 2455261 | 2455548 | + | NZ_CP029145.1 | Hymenobacter nivis |
| 28 | 4315633 | 4315920 | - | NZ_CP030041.1 | Echinicola strongylocentroti |
| 29 | 4494936 | 4495226 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 30 | 4215144 | 4215437 | + | NZ_CP034120.1 | Glaciecola amylolytica |
| 31 | 1152602 | 1152895 | - | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 32 | 5074276 | 5074563 | + | NZ_CP034562.1 | Flammeovirga pectinis |
| 33 | 1808754 | 1809041 | + | NZ_CP054139.1 | Mucilaginibacter mali |
| 34 | 1272408 | 1272698 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 35 | 1970593 | 1970904 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 36 | 395151 | 395441 | + | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 37 | 1662181 | 1662423 | - | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 38 | 2059702 | 2060007 | + | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 39 | 3747154 | 3747465 | - | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 40 | 723171 | 723461 | + | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 41 | 2519478 | 2519765 | + | NZ_CP013909.1 | Hymenobacter sedentarius |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP047984.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01553.23 | 0.98 | 40 | 20.0 | same-strand | Acyltransferase |
| 2 | PF01923.20 | 0.71 | 29 | 3793 | same-strand | Cobalamin adenosyltransferase |
| 3 | PF00005.29 | 0.83 | 34 | 3008.5 | same-strand | ABC transporter |
| 4 | PF02463.21 | 0.8 | 33 | 2962 | same-strand | RecF/RecN/SMC N terminal domain |
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