Result : Q11PN0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S21 |
| NCBI Accession ID | CP000383.1 |
| Organism | Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465) |
| Left | 3878485 |
| Right | 3878682 |
| Strand | + |
| Nucleotide Sequence | ATGATCGTAATCAACATCAAAGAAAACGAGCCAATAGATAAAGCGTTAAAGCGTTTCAAAAAGAAATTTGAAAAAACAGGTGTTTTAAAGGCACTTCGTGCTCGTTCTTACTACGAGAAAAAATCAGTACGTTTAAGAAAAGAAGTAATTCGTGCTTCTTACCGTCTTAAATTACAGGAAGCTGCTTCAAACGACTAA |
| Sequence | MIVINIKENEPIDKALKRFKKKFEKTGVLKALRARSYYEKKSVRLRKEVIRASYRLKLQEAASND |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed |
| Pubmed ID | 17400776 |
| Domain | CDD:412427 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q11PN0 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 136
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3878485 | 3878682 | + | NC_008255.1 | Cytophaga hutchinsonii ATCC 33406 |
| 2 | 3677065 | 3677259 | + | NC_015703.1 | Runella slithyformis DSM 19594 |
| 3 | 2844382 | 2844573 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 4 | 4222592 | 4222786 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 5 | 1857235 | 1857432 | + | NZ_CP032382.1 | Chryseolinea soli |
| 6 | 4366034 | 4366231 | + | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 7 | 3473754 | 3473948 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 8 | 3412643 | 3412837 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 9 | 884966 | 885160 | + | NZ_CP040106.1 | Echinicola rosea |
| 10 | 944194 | 944388 | + | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 11 | 2929430 | 2929627 | + | NZ_CP020105.1 | Spirosoma rigui |
| 12 | 863004 | 863198 | - | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 13 | 894892 | 895089 | + | NZ_CP053435.1 | Spirosoma taeanense |
| 14 | 21252 | 21449 | + | NZ_CP014263.1 | Spirosoma montaniterrae |
| 15 | 8263047 | 8263244 | - | NZ_CP050063.1 | Spirosoma aureum |
| 16 | 4993688 | 4993885 | - | NZ_CP010429.1 | Spirosoma radiotolerans |
| 17 | 8183138 | 8183335 | - | NZ_CP025096.1 | Spirosoma pollinicola |
| 18 | 6730294 | 6730491 | - | NZ_CP020104.1 | Spirosoma aerolatum |
| 19 | 198479 | 198673 | - | NZ_CP010777.1 | Rufibacter radiotolerans |
| 20 | 2436354 | 2436548 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 21 | 2680376 | 2680570 | + | NZ_CP030041.1 | Echinicola strongylocentroti |
| 22 | 2790243 | 2790437 | - | NZ_CP012643.1 | Rufibacter tibetensis |
| 23 | 4426113 | 4426307 | - | NZ_CP021235.1 | Pontibacter actiniarum |
| 24 | 3566286 | 3566480 | - | NZ_CP047897.1 | Nibribacter ruber |
| 25 | 6684485 | 6684679 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 26 | 3211530 | 3211724 | - | NZ_CP047984.1 | Pontibacter russatus |
| 27 | 1905471 | 1905665 | - | NZ_CP009621.1 | Pontibacter korlensis |
| 28 | 991158 | 991352 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 29 | 2871962 | 2872156 | + | NZ_CP048106.1 | Pontibacter pudoricolor |
| 30 | 458875 | 459069 | - | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 31 | 2448248 | 2448442 | - | NZ_CP014766.1 | Pontibacter akesuensis |
| 32 | 2675620 | 2675811 | - | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 33 | 4776015 | 4776209 | + | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 34 | 5218025 | 5218219 | + | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 35 | 841739 | 841933 | + | NZ_CP060723.1 | Pedobacter roseus |
| 36 | 3667266 | 3667460 | + | NZ_CP034562.1 | Flammeovirga pectinis |
| 37 | 3066702 | 3066893 | - | NZ_CP049246.1 | Sphingobacterium lactis |
| 38 | 512187 | 512378 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 39 | 2707004 | 2707195 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 40 | 558186 | 558380 | + | NC_018010.1 | Belliella baltica DSM 15883 |
| 41 | 2697529 | 2697720 | - | NZ_CP030848.1 | Sphingobacterium hotanense |
| 42 | 4816043 | 4816234 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 43 | 1898006 | 1898197 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 44 | 3683884 | 3684075 | - | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 45 | 4133802 | 4134002 | + | NZ_CP007145.1 | Hymenobacter swuensis DY53 |
| 46 | 2754793 | 2754987 | - | NZ_CP040896.1 | Hymenobacter jejuensis |
| 47 | 1937242 | 1937436 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 48 | 1354888 | 1355082 | + | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 49 | 1454962 | 1455156 | + | NZ_CP013909.1 | Hymenobacter sedentarius |
| 50 | 3103564 | 3103755 | - | NZ_CP054012.1 | Parabacteroides distasonis |
| 51 | 2910879 | 2911073 | - | NZ_CP029145.1 | Hymenobacter nivis |
| 52 | 2645522 | 2645710 | - | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 53 | 426934 | 427128 | - | NZ_CP044285.1 | Hymenobacter baengnokdamensis |
| 54 | 597069 | 597263 | - | NZ_CP037922.1 | Hymenobacter radiodurans |
| 55 | 1057796 | 1057987 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 56 | 1459736 | 1459927 | + | NZ_CP069450.1 | Butyricimonas virosa |
| 57 | 2361781 | 2361972 | - | NZ_LT906459.1 | Odoribacter splanchnicus |
| 58 | 548442 | 548636 | - | NZ_CP054494.1 | Flavobacterium columnare |
| 59 | 1771370 | 1771561 | - | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 60 | 1235946 | 1236140 | + | NZ_LS483447.1 | Porphyromonas crevioricanis |
| 61 | 1121818 | 1122009 | - | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 62 | 1124478 | 1124669 | - | NZ_LR699004.1 | Phocaeicola dorei |
| 63 | 595843 | 596037 | - | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 64 | 33202 | 33396 | + | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 65 | 1995174 | 1995368 | - | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 66 | 4709415 | 4709606 | - | NZ_LN877293.1 | Bacteroides fragilis |
| 67 | 3535244 | 3535402 | - | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 68 | 1515314 | 1515508 | + | NZ_CP022379.1 | Capnocytophaga sputigena |
| 69 | 2378218 | 2378412 | + | NZ_CP011071.1 | Muricauda lutaonensis |
| 70 | 4515618 | 4515809 | - | NZ_CP032869.1 | Mucilaginibacter celer |
| 71 | 141971 | 142162 | - | NZ_CP015402.2 | Muribaculum intestinale |
| 72 | 1355895 | 1356092 | - | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 73 | 3867691 | 3867882 | - | NZ_CP015401.2 | Bacteroides caecimuris |
| 74 | 699770 | 699961 | - | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 75 | 3430480 | 3430671 | - | NZ_CP012938.1 | Bacteroides ovatus |
| 76 | 1229946 | 1230137 | + | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 77 | 1063659 | 1063850 | + | NZ_CP041345.1 | Tenuifilum thalassicum |
| 78 | 2213750 | 2213941 | - | NZ_CP032819.1 | Butyricimonas faecalis |
| 79 | 1609027 | 1609218 | - | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 80 | 991220 | 991414 | + | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 81 | 1264167 | 1264361 | + | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 82 | 1473564 | 1473758 | + | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 83 | 177843 | 178037 | - | NZ_CP031188.1 | Flavobacterium arcticum |
| 84 | 3287539 | 3287733 | - | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 85 | 2481637 | 2481831 | + | NZ_CP028136.1 | Gramella fulva |
| 86 | 410223 | 410414 | + | NC_014370.1 | Prevotella melaninogenica ATCC 25845 |
| 87 | 388829 | 389020 | + | NZ_CP023863.1 | Prevotella jejuni |
| 88 | 2739377 | 2739571 | + | NZ_CP030104.1 | Flagellimonas maritima |
| 89 | 1248527 | 1248724 | - | NZ_CP017478.1 | Urechidicola croceus |
| 90 | 2586646 | 2586837 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 91 | 705067 | 705264 | + | NZ_CP020822.1 | Tenacibaculum maritimum |
| 92 | 4804237 | 4804431 | + | NZ_CP019288.1 | Kordia antarctica |
| 93 | 1337609 | 1337800 | + | NC_014933.1 | Bacteroides helcogenes P 36-108 |
| 94 | 1329411 | 1329608 | + | NZ_LT899436.1 | Tenacibaculum jejuense |
| 95 | 2406680 | 2406871 | - | NZ_LT899436.1 | Tenacibaculum jejuense |
| 96 | 1555534 | 1555725 | - | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 97 | 3475624 | 3475821 | + | NZ_CP061813.1 | Polaribacter haliotis |
| 98 | 3301865 | 3302056 | - | NZ_CP069440.1 | Phocaeicola coprophilus |
| 99 | 505831 | 506028 | + | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 100 | 1407271 | 1407462 | - | NZ_CP027231.1 | Bacteroides zoogleoformans |
| 101 | 3229635 | 3229829 | + | NZ_CP022957.1 | Maribacter cobaltidurans |
| 102 | 1168562 | 1168753 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 103 | 2931439 | 2931630 | + | NZ_LT608328.1 | Petrimonas mucosa |
| 104 | 2917900 | 2918091 | + | NC_015164.1 | Phocaeicola salanitronis DSM 18170 |
| 105 | 1557314 | 1557508 | + | NZ_CP032050.1 | Euzebyella marina |
| 106 | 2130289 | 2130483 | + | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 107 | 2688960 | 2689154 | + | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 108 | 812776 | 812970 | - | NC_015844.1 | Zobellia galactanivorans |
| 109 | 2219030 | 2219221 | - | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 110 | 2055075 | 2055266 | + | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 111 | 43041 | 43235 | - | NC_014230.1 | Croceibacter atlanticus HTCC2559 |
| 112 | 1545352 | 1545543 | - | NZ_AP023049.1 | Alistipes indistinctus |
| 113 | 1173597 | 1173794 | - | NZ_CP017477.1 | Polaribacter vadi |
| 114 | 3677626 | 3677817 | + | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 115 | 1677654 | 1677848 | - | NZ_CP029187.1 | Flavobacterium pallidum |
| 116 | 2419884 | 2420081 | + | NZ_CP019419.1 | Polaribacter reichenbachii |
| 117 | 1559076 | 1559270 | - | NZ_CP028811.1 | Flavobacterium magnum |
| 118 | 2234956 | 2235147 | - | NZ_AP019736.1 | Alistipes dispar |
| 119 | 2610727 | 2610918 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 120 | 246002 | 246193 | + | NZ_LR027382.1 | Alistipes megaguti |
| 121 | 2180574 | 2180765 | + | NZ_AP019735.1 | Alistipes communis |
| 122 | 187140 | 187331 | - | NZ_CP013195.1 | Prevotella enoeca |
| 123 | 2874088 | 2874279 | + | NZ_LR134384.1 | Prevotella oris |
| 124 | 2730935 | 2731129 | - | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 125 | 1168330 | 1168521 | - | NZ_LR134506.1 | Porphyromonas cangingivalis |
| 126 | 51967 | 52161 | - | NZ_CP020918.1 | Flavobacterium faecale |
| 127 | 2062353 | 2062550 | - | NC_017094.1 | Leptospirillum ferrooxidans C2-3 |
| 128 | 2002720 | 2002914 | - | NZ_CP019342.1 | Nonlabens tegetincola |
| 129 | 109484 | 109678 | - | NZ_CP038810.1 | Flavobacterium sangjuense |
| 130 | 3237138 | 3237341 | - | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 131 | 3344134 | 3344310 | + | NZ_AP018042.1 | Labilibaculum antarcticum |
| 132 | 807078 | 807275 | + | NZ_AP017422.1 | Filimonas lacunae |
| 133 | 2041459 | 2041653 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 134 | 6107847 | 6108044 | - | NC_016609.1 | Niastella koreensis GR20-10 |
| 135 | 151013 | 151210 | - | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 136 | 4367752 | 4367949 | - | NZ_CP032157.1 | Paraflavitalea soli |
| 137 | 616897 | 617094 | - | NZ_CP032489.1 | Arachidicoccus soli |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014759.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00589.24 | 0.85 | 115 | 78 | same-strand | Phage integrase family |
| 2 | PF02899.19 | 0.84 | 114 | 77.0 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 3 | PF02482.21 | 0.74 | 101 | 989 | same-strand | Sigma 54 modulation protein / S30EA ribosomal protein |
| 4 | PF13495.8 | 0.82 | 111 | 77 | same-strand | Phage integrase, N-terminal SAM-like domain |
++ More..