Result : Q110N2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sec-independent protein translocase protein TatA |
| NCBI Accession ID | CP000393.1 |
| Organism | Trichodesmium erythraeum (strain IMS101) |
| Left | 4471893 |
| Right | 4472156 |
| Strand | + |
| Nucleotide Sequence | GTGAATATATTTGGTATAGGCCTCCCAGAAATGATTGTTATTTTGGTGGTAGCCCTTTTGATATTTGGTCCGAAAAAGTTACCTGAAATTGGTCGGAGCTTAGGACAAGCAATAAATAGTTTTAAGGCAGGAGCACGTGATTTTGAGAATGAATTTAAACGGGAAGCAAAACATTTAGAGGAAGGAGTTAAAGTTAGTACCTCGGCCTCAGAACCAGAAAAAGTGGTAGATGTTTCTTCTGCAACAAATACAAACAAGAATTAA |
| Sequence | MNIFGIGLPEMIVILVVALLIFGPKKLPEIGRSLGQAINSFKAGARDFENEFKREAKHLEEGVKVSTSASEPEKVVDVSSATNTNKN |
| Source of smORF | Swiss-Prot |
| Function | Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. {ECO:0000255|HAMAP-Rule:MF_00236}. |
| Pubmed ID | |
| Domain | CDD:294511 |
| Functional Category | Others |
| Uniprot ID | Q110N2 |
| ORF Length (Amino Acid) | 87 |
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| Conservation Analysis |
No. of Species: 20
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1118245 | 1118517 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 2 | 3939602 | 3939883 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 3 | 6081213 | 6081485 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 4 | 4699605 | 4699883 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 5 | 5406033 | 5406308 | + | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 6 | 2616653 | 2616913 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 7 | 5548098 | 5548370 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 8 | 506498 | 506770 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 9 | 3945776 | 3946060 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 10 | 1990672 | 1990944 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 11 | 4963623 | 4963871 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 12 | 4155584 | 4155832 | - | NC_019751.1 | Calothrix sp. PCC 6303 |
| 13 | 699729 | 699998 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 14 | 1171178 | 1171411 | + | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 15 | 1452569 | 1452802 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 16 | 3110314 | 3110622 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 17 | 6050250 | 6050501 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 18 | 2537354 | 2537638 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 19 | 1004503 | 1004736 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 20 | 1283564 | 1283782 | + | NZ_CP016312.1 | Thermus brockianus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP031941.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00737.22 | 0.8 | 16 | 142.0 | same-strand | Photosystem II 10 kDa phosphoprotein |
| 2 | PF02468.17 | 0.75 | 15 | 440 | opposite-strand | Photosystem II reaction centre N protein (psbN) |
| 3 | PF01195.21 | 0.6 | 12 | 35.5 | same-strand | Peptidyl-tRNA hydrolase |
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