Result : A6VPR2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein RnfH |
| NCBI Accession ID | CP000746.1 |
| Organism | Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / 130Z) |
| Left | 1769939 |
| Right | 1770241 |
| Strand | - |
| Nucleotide Sequence | ATGGAACAAATAAATATCGAAATCGCTTACGCCTATCCGCATAATCACTATTTGAAATCCTTTACATTAGATGCGGGAACAACCGTGCAGTCCGCCATTTTGCAATCAGGTATTTTAGCCCAATATACGGATATCGATTTACGTAAAAATAAGATCGGTATTTTTGCCCGACCGGTAAAATTAACGGATGTATTGAAAAATGGTGATCGTATCGAAATTTACCGTCCGTTATTGGCGGATCCGAAAGAAATCCGCCGTAAACGCGCCGCTCAGCAGGCAGCCCGGCAAAAGGGAAAAATATAA |
| Sequence | MEQINIEIAYAYPHNHYLKSFTLDAGTTVQSAILQSGILAQYTDIDLRKNKIGIFARPVKLTDVLKNGDRIEIYRPLLADPKEIRRKRAAQQAARQKGKI |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl28922. Profile Description: Beta-grasp ubiquitin-like fold. This domain is the binding/interacting region of several protein kinases, such as the Schizosaccharomyces pombe Byr2. Byr2 is a Ser/Thr-specific protein kinase acting as mediator of signals for sexual differentiation in S. pombe by initiating a MAPK module, which is a highly conserved element in eukaryotes. Byr2 is activated by interacting with Ras, which then translocates the molecule to the plasma membrane. Ras proteins are key elements in intracellular signaling and are involved in a variety of vital processes such as DNA transcription, growth control, and differentiation. They function like molecular switches cycling between GTP-bound 'on' and GDP-bound 'off' states. |
| Pubmed ID | 21118570 |
| Domain | CDD:421700 |
| Functional Category | Antitoxin_type_2 |
| Uniprot ID | A6VPR2 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 218
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 125417 | 125749 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 2 | 520183 | 520515 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 3 | 702295 | 702603 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 4 | 768184 | 768498 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 5 | 626437 | 626745 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 6 | 77645 | 77953 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 7 | 2236021 | 2236314 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 8 | 925812 | 926105 | - | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 9 | 293535 | 293801 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 10 | 1254152 | 1254451 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 11 | 1165185 | 1165490 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 12 | 1576949 | 1577248 | + | NZ_CP028926.1 | Pasteurella multocida |
| 13 | 1377468 | 1377746 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 14 | 296427 | 296723 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 15 | 272804 | 273100 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 16 | 1208643 | 1208942 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 17 | 716759 | 717055 | + | NZ_CP016604.1 | Otariodibacter oris |
| 18 | 1183617 | 1183886 | - | NZ_CP061280.1 | Mannheimia bovis |
| 19 | 761740 | 762009 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 20 | 1164674 | 1164940 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 21 | 868036 | 868320 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 22 | 702666 | 702935 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 23 | 1228450 | 1228740 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 24 | 1322770 | 1323063 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 25 | 723356 | 723619 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 26 | 1269758 | 1270000 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 27 | 645376 | 645630 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 28 | 1140094 | 1140336 | - | NZ_CP046531.1 | Mannheimia ovis |
| 29 | 1574585 | 1574878 | + | NZ_CP048796.1 | Providencia vermicola |
| 30 | 877885 | 878178 | + | NZ_CP025799.1 | Dickeya zeae |
| 31 | 3500668 | 3500964 | - | NZ_CP029736.1 | Providencia rettgeri |
| 32 | 3660186 | 3660452 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 33 | 1294481 | 1294741 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 34 | 5062905 | 5063171 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 35 | 2710632 | 2710898 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 36 | 1450737 | 1451030 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 37 | 882318 | 882611 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 38 | 2299469 | 2299765 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 39 | 2339497 | 2339790 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 40 | 4004651 | 4004944 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 41 | 1293787 | 1294080 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 42 | 1204688 | 1204978 | + | NZ_CP054254.1 | Klebsiella variicola |
| 43 | 512950 | 513210 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 44 | 3877003 | 3877263 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 45 | 1710045 | 1710329 | - | NZ_CP009787.1 | Yersinia rohdei |
| 46 | 948776 | 949069 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 47 | 4096782 | 4097072 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 48 | 2825581 | 2825847 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 49 | 478780 | 479052 | - | NZ_CP026047.1 | Raoultella planticola |
| 50 | 1775872 | 1776138 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 51 | 1214926 | 1215180 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 52 | 1871848 | 1872141 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 53 | 3566134 | 3566385 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 54 | 3591343 | 3591606 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 55 | 3677862 | 3678122 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 56 | 1165589 | 1165855 | + | NZ_CP041247.1 | Raoultella electrica |
| 57 | 1445529 | 1445795 | - | NZ_CP033744.1 | Citrobacter freundii |
| 58 | 3754633 | 3754893 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 59 | 4833408 | 4833668 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 60 | 3037397 | 3037690 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 61 | 1081590 | 1081856 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 62 | 3529718 | 3529969 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 63 | 1295066 | 1295335 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 64 | 3669829 | 3670080 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 65 | 1179627 | 1179890 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 66 | 2909162 | 2909428 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 67 | 1170336 | 1170590 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 68 | 1106118 | 1106378 | + | NZ_LR134531.1 | Pragia fontium |
| 69 | 3037606 | 3037899 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 70 | 3274176 | 3274466 | - | NZ_LR134340.1 | Escherichia marmotae |
| 71 | 3542619 | 3542903 | - | NZ_CP046293.1 | Yersinia intermedia |
| 72 | 854392 | 854658 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 73 | 3671468 | 3671734 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 74 | 660349 | 660615 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 75 | 1697181 | 1697435 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 76 | 734585 | 734851 | - | NZ_CP053416.1 | Salmonella bongori |
| 77 | 4830074 | 4830334 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 78 | 3397729 | 3397995 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 79 | 428000 | 428293 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 80 | 3870738 | 3871007 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 81 | 2287942 | 2288229 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 82 | 947451 | 947744 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 83 | 1583270 | 1583563 | + | NZ_LS483422.1 | Providencia heimbachae |
| 84 | 2752547 | 2752813 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 85 | 3326273 | 3326539 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 86 | 2754008 | 2754274 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 87 | 1361461 | 1361715 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 88 | 4297455 | 4297724 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 89 | 3773110 | 3773403 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 90 | 4339957 | 4340226 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 91 | 2723093 | 2723359 | - | NZ_AP014857.1 | Escherichia albertii |
| 92 | 4021273 | 4021539 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 93 | 3569807 | 3570067 | - | NC_015968.1 | Enterobacter soli |
| 94 | 1116769 | 1117011 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 95 | 1209302 | 1209592 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 96 | 1023607 | 1023873 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 97 | 3521827 | 3522120 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 98 | 1447985 | 1448239 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 99 | 654767 | 655027 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 100 | 841991 | 842233 | + | NZ_LT615367.1 | Dickeya aquatica |
| 101 | 345724 | 346017 | - | NZ_CP026364.1 | Proteus hauseri |
| 102 | 1154983 | 1155267 | + | NZ_CP043727.1 | Yersinia canariae |
| 103 | 3558799 | 3559062 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 104 | 365658 | 365912 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 105 | 3474150 | 3474416 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 106 | 863787 | 864077 | + | NZ_LR134201.1 | Cedecea lapagei |
| 107 | 1123040 | 1123324 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 108 | 269682 | 269966 | - | NZ_CP011254.1 | Serratia fonticola |
| 109 | 93426 | 93719 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 110 | 1252512 | 1252769 | + | NZ_CP050508.1 | Raoultella terrigena |
| 111 | 3062377 | 3062661 | + | NZ_CP007230.1 | Yersinia similis |
| 112 | 2507702 | 2507989 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 113 | 3804941 | 3805225 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 114 | 3101693 | 3101986 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 115 | 738725 | 738982 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 116 | 2960970 | 2961254 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 117 | 273775 | 274059 | - | NZ_CP065640.1 | Serratia rubidaea |
| 118 | 121502 | 121768 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 119 | 863180 | 863464 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 120 | 905001 | 905267 | + | NZ_CP023525.1 | Cedecea neteri |
| 121 | 4152430 | 4152714 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 122 | 3489903 | 3490187 | - | NZ_CP032487.1 | Yersinia hibernica |
| 123 | 4103305 | 4103589 | - | NZ_LR134494.1 | Serratia quinivorans |
| 124 | 4080768 | 4081052 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 125 | 942430 | 942699 | + | NZ_CP046268.1 | Vibrio spartinae |
| 126 | 2379092 | 2379376 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 127 | 2636829 | 2637122 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 128 | 1054165 | 1054416 | + | NZ_CP050150.1 | Hafnia alvei |
| 129 | 2933272 | 2933577 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 130 | 1762166 | 1762435 | - | NZ_CP049115.1 | Pantoea stewartii |
| 131 | 3863109 | 3863372 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 132 | 3297715 | 3297978 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 133 | 810753 | 811040 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 134 | 4621975 | 4622253 | + | NZ_CP038469.1 | Citrobacter tructae |
| 135 | 3247217 | 3247483 | - | NZ_CP061511.1 | Mixta calida |
| 136 | 2049484 | 2049777 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 137 | 3191177 | 3191461 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 138 | 2690996 | 2691277 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 139 | 993099 | 993359 | + | NZ_CP038853.1 | Pantoea vagans |
| 140 | 2575970 | 2576239 | - | NZ_LS483470.1 | Leminorella richardii |
| 141 | 3112964 | 3113245 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 142 | 2040829 | 2041071 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 143 | 3184064 | 3184339 | - | NZ_CP015581.1 | Tatumella citrea |
| 144 | 2501849 | 2502133 | - | NZ_CP067057.1 | Rahnella aceris |
| 145 | 4702071 | 4702352 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 146 | 3309375 | 3309659 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 147 | 2610638 | 2610922 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 148 | 3680595 | 3680864 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 149 | 1072300 | 1072584 | + | NZ_CP071320.1 | Serratia ureilytica |
| 150 | 3995792 | 3996076 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 151 | 488561 | 488872 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 152 | 1214269 | 1214553 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 153 | 4024499 | 4024783 | - | NZ_LT906479.1 | Serratia ficaria |
| 154 | 1019197 | 1019457 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 155 | 3811406 | 3811660 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 156 | 4563971 | 4564255 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 157 | 855993 | 856274 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 158 | 3461881 | 3462147 | - | NZ_CP026377.1 | Mixta gaviniae |
| 159 | 2606058 | 2606324 | - | NZ_CP028271.1 | Mixta intestinalis |
| 160 | 748635 | 748916 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 161 | 2681680 | 2681946 | + | NZ_CP011451.1 | Nitrosomonas communis |
| 162 | 2179559 | 2179828 | - | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 163 | 2230124 | 2230402 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 164 | 443664 | 443942 | + | NZ_AP019657.1 | Vibrio ponticus |
| 165 | 5107364 | 5107630 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 166 | 2594740 | 2595027 | + | NZ_CP019706.1 | Pantoea alhagi |
| 167 | 1325234 | 1325518 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 168 | 813927 | 814205 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 169 | 3265249 | 3265515 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 170 | 2354737 | 2355018 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 171 | 2465019 | 2465291 | - | NZ_CP040449.1 | Aeromonas simiae |
| 172 | 2021554 | 2021847 | - | NZ_CP025120.1 | Kangiella profundi |
| 173 | 2236115 | 2236450 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 174 | 3040508 | 3040780 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 175 | 569510 | 569788 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 176 | 2806318 | 2806602 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 177 | 828473 | 828754 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 178 | 677332 | 677595 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 179 | 2983586 | 2983864 | - | NC_013456.1 | Vibrio antiquarius |
| 180 | 2586370 | 2586654 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 181 | 2785090 | 2785404 | + | NZ_CP064781.1 | Azospira restricta |
| 182 | 5052520 | 5052783 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 183 | 955730 | 955996 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 184 | 2546132 | 2546395 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 185 | 463819 | 464094 | + | NZ_CP035688.1 | Vibrio metoecus |
| 186 | 765522 | 765797 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 187 | 319406 | 319654 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 188 | 800548 | 800826 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 189 | 1588314 | 1588658 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 190 | 1032672 | 1032929 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 191 | 1275538 | 1275822 | + | NZ_CP040990.1 | Vibrio furnissii |
| 192 | 571541 | 571837 | + | NZ_CP012418.1 | Kangiella sediminilitoris |
| 193 | 1086425 | 1086691 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 194 | 1089401 | 1089646 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 195 | 3513624 | 3513878 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 196 | 2827633 | 2827893 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 197 | 2800872 | 2801156 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 198 | 1031635 | 1031910 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 199 | 2178954 | 2179199 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 200 | 2010663 | 2010938 | + | NZ_CP014056.2 | Grimontia hollisae |
| 201 | 1194703 | 1194972 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 202 | 3929200 | 3929487 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 203 | 2455680 | 2455958 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 204 | 3850723 | 3850986 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 205 | 2593003 | 2593269 | - | NZ_AP014635.1 | Vibrio tritonius |
| 206 | 1288675 | 1288938 | + | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 207 | 2587569 | 2587844 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 208 | 995132 | 995404 | - | NZ_CP039887.1 | Neisseria subflava |
| 209 | 3937332 | 3937637 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 210 | 2018727 | 2018993 | - | NZ_CP033078.1 | Vibrio zhugei |
| 211 | 942522 | 942851 | + | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 212 | 1017294 | 1017566 | - | NC_018012.1 | Thiocystis violascens DSM 198 |
| 213 | 2482152 | 2482394 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 214 | 2652463 | 2652714 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 215 | 1678705 | 1678962 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 216 | 2271488 | 2271751 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 217 | 1310625 | 1310930 | - | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 218 | 1231942 | 1232205 | - | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 219 | 2494376 | 2494645 | - | NZ_CP007445.1 | Gilliamella apicola |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP042941.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03364.22 | 0.95 | 208 | 14 | same-strand | Polyketide cyclase / dehydrase and lipid transport |
| 2 | PF10604.11 | 0.95 | 207 | 14 | same-strand | Polyketide cyclase / dehydrase and lipid transport |
| 3 | PF01025.21 | 0.76 | 166 | 3361 | same-strand | GrpE |
| 4 | PF20143.1 | 0.78 | 169 | 2356.0 | opposite-strand | ATP-NAD kinase C-terminal domain |
| 5 | PF01513.23 | 0.74 | 161 | 2356.0 | opposite-strand | ATP-NAD kinase N-terminal domain |
| 6 | PF02463.21 | 0.78 | 171 | 603 | opposite-strand | RecF/RecN/SMC N terminal domain |
| 7 | PF13476.8 | 0.76 | 165 | 604.0 | opposite-strand | AAA domain |
| 8 | PF04355.15 | 0.79 | 172 | 92 | opposite-strand | SmpA / OmlA family |
| 9 | PF01668.20 | 0.86 | 188 | 604 | opposite-strand | SmpB protein |
++ More..